Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484139.1

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1495

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

agtcggcgtcttcagtcctcgttgaatcgatcttcgtcttctcttctaatctcccccaaagtaagattcgaagctgcaaagatagagccatccgaccgtaaaaggaagaaagcagcttcttccctctcagcagatcattcggacaataacaaagacaaaaggcagagaagcaccaagagcaaaaagacgaaaatgtcctcatcgaatcaggtcagggcatcccacatactgatcaagcaccaaggttccagaagaaaggcctcatggaaggatccagatggtgttgttatcagtaacaccacccgagatgcggctgtcactcaacttaagtcacttcgtgaggacattgtttctggcaagttcacgtttgacaatgttgctactcgcttctctgattgcagctctgccaagcgcggtggtgatcttggtcagctccttacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

147

Amino Acids

16.26

Weight (kDa)

10.87

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	193
AccII	CGCG	1 cut(s)	414
AciI	CCGC	2 cut(s)	311, 414
AclWI	GGATC	2 cut(s)	266, 279
AcyI	GRCGYC	1 cut(s)	7
AdeI	CACNNNGTG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	4 cut(s)	74, 116, 402, 433
AluI	AGCT	4 cut(s)	74, 116, 402, 433
AlwI	GGATC	2 cut(s)	266, 279
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	74, 113, 399
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	2, 30
BbvI	GCAGC	3 cut(s)	61, 125, 411
BccI	CCATC	2 cut(s)	97, 272
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	4 cut(s)	75, 114, 312, 400
BlsI	GCNGC	4 cut(s)	76, 115, 313, 401
BmeT110I	CYCGRG	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	247, 273
BmsI	GCATC	2 cut(s)	227, 298
BpiI	GAAGAC	2 cut(s)	2, 30
Bpu14I	TTCGAA	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	89, 218
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	61, 125, 411
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	69
Bsp143I	GATC	5 cut(s)	29, 133, 231, 271, 421
BspACI	CCGC	2 cut(s)	311, 414
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	140
BspDI	ATCGAT	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	247, 273
BspPI	GGATC	2 cut(s)	266, 279
BspT104I	TTCGAA	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	5 cut(s)	29, 133, 231, 271, 421
BssNI	GRCGYC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	7
BstAFI	CTTAAG	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	89, 218
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	5 cut(s)	32, 136, 234, 274, 424
BstMBI	GATC	5 cut(s)	29, 133, 231, 271, 421
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	61, 125, 411
BstV2I	GAAGAC	2 cut(s)	2, 30
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	89, 218
CfoI	GCGC	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	7 cut(s)	74, 88, 116, 260, 314, 402, 433
CviKI_1	RGCY	7 cut(s)	74, 88, 116, 260, 314, 402, 433
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	5 cut(s)	31, 135, 233, 273, 423
DpnII	GATC	5 cut(s)	29, 133, 231, 271, 421
DraIII	CACNNNGTG	1 cut(s)	338
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	267
FaiI	YATR	2 cut(s)	227, 265
FatI	CATG	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	75, 114, 312, 400
FokI	GGATG	2 cut(s)	76, 205
Fsp4HI	GCNGC	4 cut(s)	75, 114, 312, 400
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	4 cut(s)	75, 114, 312, 400
HaeIII	GGCC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	25, 66, 205
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	3 cut(s)	94, 142, 394
Hpy188III	TCNNGA	3 cut(s)	249, 275, 338
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	77, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	29, 133, 231, 271, 421
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	5 cut(s)	194, 199, 262, 288, 339
Lsp1109I	GCAGC	3 cut(s)	61, 125, 411
LweI	GCATC	2 cut(s)	227, 298
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	3 cut(s)	293, 316, 330
MalI	GATC	5 cut(s)	31, 135, 233, 273, 423
MboI	GATC	5 cut(s)	29, 133, 231, 271, 421
MboII	GAAGA	6 cut(s)	24, 30, 35, 111, 118, 264
MflI	RGATCY	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	28, 134, 208, 271, 334
MseI	TTAA	2 cut(s)	327, 442
MspCI	CTTAAG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	5 cut(s)	29, 133, 231, 271, 421
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	247, 273
NmuCI	GTSAC	2 cut(s)	316, 330
NspV	TTCGAA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	25, 66, 205
PkrI	GCNGC	4 cut(s)	76, 115, 313, 401
PspN4I	GGNNCC	2 cut(s)	247, 273
PsuI	RGATCY	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	327, 442
SatI	GCNGC	4 cut(s)	75, 114, 312, 400
Sau3AI	GATC	5 cut(s)	29, 133, 231, 271, 421
SetI	ASST	7 cut(s)	76, 118, 213, 247, 368, 404, 435
SfaNI	GCATC	2 cut(s)	227, 298
SfuI	TTCGAA	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	311, 414
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	3 cut(s)	28, 69, 203
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	3 cut(s)	25, 66, 205
Tru1I	TTAA	2 cut(s)	327, 442
Tru9I	TTAA	2 cut(s)	327, 442
TseFI	GTSAC	2 cut(s)	316, 330
TseI	GCWGC	3 cut(s)	74, 113, 399
Tsp45I	GTSAC	2 cut(s)	316, 330
Vha464I	CTTAAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.