Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Reverse (-)

20815094 .. 20817777

Gene Structure 2684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCACTCTTACACTAATCTAATGACTGGACAACTATTCATGATTTCGAGTCGGCGTCTTCAGTCCTCCTCCAACCGATCTTCGTCTTCTCTTCTAATCTCCCCCAAAGTAAGATTCGAAGCTGCAAAGATAGAGCCATCCGACCGTAAAAGGAAGAAAGCAGCTTCTTCCCTGTCAGCAGATCATTCGGACAATAACAAAGACAAAAGGCAGAGAAGCACCAAGAGCAAAAAGACGAAAATGTCCTCATCGAATCAGGTCAGGGCATCCCACATACTGATCAAGCACCAAGGTTCCAGAAGAAAGGCCTCATGGAAGGACCCAGATGGTGTTGTTATCAGTAACACCACCCGAGATGCGGCTGTCACTCAACTCAAGTCACTTCGTGAGGACATTGTTTCTGGCAAGTTCACGTTTGACAATGTTGCTACTCGCGTCTCTGATTGCAGCTCTGCCAAGCGTGGTGGTGATCTGGGCCCTTTTGGCCGCGGCCAGATGCAGAAGCCTTTTGAAGAGGCAACATTTGCTCTCAAGGTTGGGGAGATAAGTGAAATTGTGGATACAGACAGTGGAGTTCATATCATCCTGAGGACCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

200

Amino Acids

21.94

Weight (kDa)

10.34

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	78 - 195	2.8e-19	PPIC-type PPIASE domain
Rotamase	PF00639	91 - 197	2.2e-23	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccII	CGCG	2 cut(s)	435, 489
AciI	CCGC	3 cut(s)	359, 487, 489
AcoI	YGGCCR	2 cut(s)	484, 490
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	1 cut(s)	512
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	3 cut(s)	122, 164, 450
AluI	AGCT	3 cut(s)	122, 164, 450
Alw26I	GTCTC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	4 cut(s)	306, 475, 484, 490
ApaI	GGGCCC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	122, 161, 447
AsiGI	ACCGGT	1 cut(s)	593
AspS9I	GGNCC	4 cut(s)	319, 475, 476, 591
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	2 cut(s)	319, 591
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	50, 78
BbvI	GCAGC	3 cut(s)	109, 173, 459
BccI	CCATC	2 cut(s)	145, 320
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	553
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	6 cut(s)	123, 162, 360, 448, 487, 490
BlsI	GCNGC	6 cut(s)	124, 163, 361, 449, 488, 491
Bme18I	GGWCC	2 cut(s)	319, 591
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	4 cut(s)	319, 475, 476, 591
BmiI	GGNNCC	3 cut(s)	295, 321, 477
BmsI	GCATC	3 cut(s)	275, 346, 486
BpiI	GAAGAC	2 cut(s)	50, 78
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	359, 515
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	289, 487
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	289, 487
BseGI	GGATG	3 cut(s)	137, 266, 582
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	58
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	109, 173, 459
Bsh1236I	CGCG	2 cut(s)	435, 489
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	308, 477, 486, 492
BshTI	ACCGGT	1 cut(s)	593
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	308, 477, 486, 492
BsoBI	CYCGRG	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	117
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	77, 181, 279, 469
BspACI	CCGC	3 cut(s)	359, 487, 489
BspANI	GGCC	4 cut(s)	308, 477, 486, 492
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	2 cut(s)	435, 489
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	295, 321, 477
BspT104I	TTCGAA	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	289, 487
BssMI	GATC	4 cut(s)	77, 181, 279, 469
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	146, 569
Bst6I	CTCTTC	2 cut(s)	96, 507
BstACI	GRCGYC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	587
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	3 cut(s)	137, 266, 582
BstFNI	CGCG	2 cut(s)	435, 489
BstKTI	GATC	4 cut(s)	80, 184, 282, 472
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	4 cut(s)	77, 181, 279, 469
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 483, 524
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	2 cut(s)	435, 489
BstV1I	GCAGC	3 cut(s)	109, 173, 459
BstV2I	GAAGAC	2 cut(s)	50, 78
Bsu36I	CCTNAGG	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	308, 477, 486, 492
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	137, 266, 582
BtsIMutI	CAGTG	1 cut(s)	574
CciI	TCATGA	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	4 cut(s)	319, 475, 476, 591
Cfr42I	CCGCGG	1 cut(s)	490
CseI	GACGC	2 cut(s)	44, 424
CspAI	ACCGGT	1 cut(s)	593
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	2 cut(s)	40, 312
DdeI	CTNAG	1 cut(s)	587
DpnI	GATC	4 cut(s)	79, 183, 281, 471
DpnII	GATC	4 cut(s)	77, 181, 279, 469
DraIII	CACNNNGTG	1 cut(s)	386
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	2 cut(s)	484, 490
Eam1104I	CTCTTC	2 cut(s)	96, 507
EarI	CTCTTC	2 cut(s)	96, 507
Eco130I	CCWWGG	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	319, 591
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	351
EcoO109I	RGGNCCY	2 cut(s)	319, 476
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	2 cut(s)	43, 315
FaiI	YATR	4 cut(s)	41, 275, 313, 579
FatI	CATG	2 cut(s)	39, 311
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	123, 162, 360, 448, 487, 490
FokI	GGATG	3 cut(s)	124, 253, 569
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	6 cut(s)	123, 162, 360, 448, 487, 490
GluI	GCNGC	6 cut(s)	123, 162, 360, 448, 487, 490
HaeIII	GGCC	4 cut(s)	308, 477, 486, 492
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	2 cut(s)	44, 424
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	43, 315
HinfI	GANTC	3 cut(s)	49, 114, 253
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	142, 190, 442
Hpy188III	TCNNGA	4 cut(s)	40, 297, 386, 586
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	146, 569
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	4, 125, 447, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 483, 524
HpyF3I	CTNAG	1 cut(s)	587
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	43, 315
Ksp22I	TGATCA	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	77, 181, 279, 469
LpnPI	CCDG	9 cut(s)	12, 185, 242, 247, 310, 336, 387, 458, 506
Lsp1109I	GCAGC	3 cut(s)	109, 173, 459
LweI	GCATC	3 cut(s)	275, 346, 486
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	341, 364, 378
MalI	GATC	4 cut(s)	79, 183, 281, 471
MboI	GATC	4 cut(s)	77, 181, 279, 469
MboII	GAAGA	8 cut(s)	50, 72, 78, 83, 159, 166, 312, 524
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	2 cut(s)	96, 165
MnlI	CCTC	7 cut(s)	76, 79, 256, 319, 382, 508, 582
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	1 cut(s)	594
MvnI	CGCG	2 cut(s)	435, 489
MwoI	GCNNNNNNNGC	3 cut(s)	225, 483, 524
NdeII	GATC	4 cut(s)	77, 181, 279, 469
NlaIII	CATG	2 cut(s)	43, 315
NlaIV	GGNNCC	3 cut(s)	295, 321, 477
NmuCI	GTSAC	2 cut(s)	364, 378
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	114, 253
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	6 cut(s)	124, 163, 361, 449, 488, 491
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	295, 321, 477
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	4 cut(s)	319, 475, 476, 591
PspPPI	RGGWCCY	1 cut(s)	319
SacII	CCGCGG	1 cut(s)	490
SatI	GCNGC	6 cut(s)	123, 162, 360, 448, 487, 490
Sau3AI	GATC	4 cut(s)	77, 181, 279, 469
Sau96I	GGNCC	4 cut(s)	319, 475, 476, 591
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	7 cut(s)	124, 166, 261, 295, 416, 452, 537
SfaNI	GCATC	3 cut(s)	275, 346, 486
SfiI	GGCCNNNNNGGCC	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	490
SfuI	TTCGAA	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	490
SinI	GGWCC	2 cut(s)	319, 591
SmlI	CTYRAG	2 cut(s)	374, 530
SmoI	CTYRAG	2 cut(s)	374, 530
Sse9I	AATT	1 cut(s)	552
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	3 cut(s)	359, 487, 489
StuI	AGGCCT	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	146, 569
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	3 cut(s)	47, 117, 251
TasI	AATT	1 cut(s)	552
TauI	GCSGC	3 cut(s)	362, 489, 492
TfiI	GAWTC	2 cut(s)	114, 253
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	2 cut(s)	364, 378
TseI	GCWGC	3 cut(s)	122, 161, 447
Tsp45I	GTSAC	2 cut(s)	364, 378
TspDTI	ATGAA	2 cut(s)	28, 566
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	319, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.