Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

6478835 .. 6482172

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1077500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCCTCTTCAGCGGGGAATCAGGTGAGGGCGTCCCATATACTCATCAAGCATCAGGGTTCGAGAAGAAAGGCGTCATGGAAGGATCCTGAAGGTCAGATCATCAGGAACACCACCCAAGACTCTGCCGTCTCTCAACTCAAGGCCCTCCGTGATGAAATTCTTTCTGGAAAGGCCAAGTTTGACGATCTCGCCTCACGCTACTCTGATTGCAGTTCTGCCAAACGTGGTGGCGATCTCGGTCCCTTTGGCCGGAACCAGATGCAGAAACCTTTTGAAGAAGCAACATTTGCGCTCAAGGTTGGTGAGATGAGCGACATTGTGGATACGGATAGTGGAGTCCATATCATCATGAGAACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

122

Amino Acids

13.22

Weight (kDa)

9.2

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	4 - 117	5.2e-21	PPIC-type PPIASE domain
Rotamase	PF00639	13 - 119	8.6e-23	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	80, 93
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	2 cut(s)	32, 74
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	80, 93
AoxI	GGCC	3 cut(s)	144, 174, 250
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	145, 242
AsuHPI	GGTGA	2 cut(s)	37, 317
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	145, 242
BmiI	GGNNCC	3 cut(s)	87, 244, 257
BmsI	GCATC	2 cut(s)	61, 252
BpuEI	CTTGAG	2 cut(s)	125, 281
BsaHI	GRCGYC	2 cut(s)	32, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	146, 176, 252
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	19, 228
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	19, 228
BsnI	GGCC	3 cut(s)	146, 176, 252
Bsp143I	GATC	4 cut(s)	85, 99, 187, 235
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	146, 176, 252
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	87, 244, 257
BspPI	GGATC	2 cut(s)	80, 93
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	4 cut(s)	85, 99, 187, 235
BssNI	GRCGYC	2 cut(s)	32, 74
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	2 cut(s)	32, 74
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	88, 102, 190, 238
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	4 cut(s)	85, 99, 187, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	146, 176, 252
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	145, 242
CseI	GACGC	2 cut(s)	21, 63
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	2 cut(s)	78, 352
CviJI	RGCY	3 cut(s)	146, 176, 252
CviKI_1	RGCY	3 cut(s)	146, 176, 252
DpnI	GATC	4 cut(s)	87, 101, 189, 237
DpnII	GATC	4 cut(s)	85, 99, 187, 235
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	81, 355
FaiI	YATR	5 cut(s)	39, 41, 79, 345, 353
FaqI	GGGAC	2 cut(s)	19, 228
FatI	CATG	2 cut(s)	77, 351
FauI	CCCGC	1 cut(s)	7
GlaI	GCGC	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	146, 176, 252
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	2 cut(s)	21, 63
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	2 cut(s)	32, 74
Hin1II	CATG	2 cut(s)	81, 355
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	3 cut(s)	19, 122, 339
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	37, 317
Hpy188I	TCNGA	2 cut(s)	99, 208
Hpy188III	TCNNGA	5 cut(s)	63, 89, 106, 168, 352
HpyAV	CCTTC	2 cut(s)	76, 86
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	213, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	2 cut(s)	32, 74
Hsp92II	CATG	2 cut(s)	81, 355
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	4 cut(s)	85, 99, 187, 235
LpnPI	CCDG	8 cut(s)	8, 41, 91, 102, 153, 266, 272, 345
LweI	GCATC	2 cut(s)	61, 252
MaeII	ACGT	1 cut(s)	226
MalI	GATC	4 cut(s)	87, 101, 189, 237
MboI	GATC	4 cut(s)	85, 99, 187, 235
MboII	GAAGA	2 cut(s)	78, 290
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	2 cut(s)	116, 348
MnlI	CCTC	4 cut(s)	16, 21, 158, 205
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	4 cut(s)	85, 99, 187, 235
NlaIII	CATG	2 cut(s)	81, 355
NlaIV	GGNNCC	3 cut(s)	87, 244, 257
PagI	TCATGA	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	19
PleI	GAGTC	2 cut(s)	116, 347
PpsI	GAGTC	2 cut(s)	116, 347
PspN4I	GGNNCC	3 cut(s)	87, 244, 257
PspPI	GGNCC	2 cut(s)	145, 242
PsuI	RGATCY	1 cut(s)	85
Sau3AI	GATC	4 cut(s)	85, 99, 187, 235
Sau96I	GGNCC	2 cut(s)	145, 242
SchI	GAGTC	2 cut(s)	116, 348
SetI	ASST	5 cut(s)	27, 97, 229, 274, 303
SfaNI	GCATC	2 cut(s)	61, 252
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	140, 296
SmoI	CTYRAG	2 cut(s)	140, 296
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	14
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	2 cut(s)	140, 344
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.