Rorug03G0207800

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
18475258 .. 18503362
28105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0207800.1

Sequence Viewer

Length: 1545 bp
ATGAAAAATATGACAGAATCTAGGTCCCCATTTCTTTTCTGGTTCTCTTTCTTCTGTTTGCTTCATTCGCTTCCTGTCTACTCTGCCAAATCCTCACATCGTAGATTCCCATCTTTACTGATATCCCCAGGAGAAAAGATATCACCTTCTGCTGGTCAAAACCAACTTTACAGAACCAAATACTTCACCCAAGTCCTTGACCATTTCAATTACTATCCCAAGAGCAATGAAACTTTCCAACAGAGGTATTTGATAAATGATACGTTCTGGGGAGGCGCCAAGAGCAATGCTCCAATCTTTGTTTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGGAGAACACTGGTTTTCTGTATGACACGGCTCCCCATTTTAAGGCCCTCATCATTTTCATTGAGCATAGGTTCTATGGAAAGTCTATACCTTTTGGGGGCAAGAAAGATGTGGCTTATAGCAATTCAACTACACTTGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCGTTAATTATTGATTTGAAGAATAATTTGACAGCAACTGACTCACCTGTAGTGGTCTTTGGAGGTTCTTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAGTATCCCCATGTTACAATTGGAGCTTTGGCATCATCTTCCCCAATCCTCAATTTTGAGAATATAACATCTCCTTATAGCTTCAACGATATAGTCACTAAAGACTTTAGGAGTGAGAGTGAAAGTTGTTACAAAGTGATCAAAGGCTCGTGGCAACAGATCGAAGACACTGCAAACCAACATGGAGGGCTTGAGCTACTCCGGAAATCGTTTAAAATATGCAAGAATTATATTAACGCAGATGATCTTGAAGGTTGGCTTAGAACCGCTTATATTTACACAGCAATGACAGATTATCCTACTCCCTCGAATTTCTTAAATCCCTTGCCAGCATATCCAGTGAAACAGATGTGCAAGGCGATAGATGATCCAACGACAGGAAATGATACATTTGCAAAATTATATGGTGCAGCTACTGTCTACTATAACTACAGTGGGACGGCTACGTGTTTCGATCTTAATGATAACTCAGATCCTCACGACCTCGGAGGATGGCAATGGCAGGCGTGTACAGAGATGATAATGCCAACAAGTGCTAACAACGAGGAGAGCATATTCCCACCTTCTGAGTGGCAATACAAAAATCGAGTCTCTTATTGCGAAGGGGCTTATGGCATTGAACCTAGGCCTCATTGGATCACCACCGAGTTTGGCGGTCATGATATCAAGAGGGTTTTAAGAAGATATGGGAGCAACATTATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAACAATATTTCCAAGAGCATAGTAGCAATTGTTGCTGAAAAAGGTGCTCACCATGTAGATTTGAGGTTCAAAACCAGTGAAGATCCAGAATGGCTTGAAGATGTGAGGAAGCAAGAGATCAAGATCATTGCAAAGTGGATCTCAGAATATTATCATGACCTTGCTCATGATCAACTATCTTAA

Protein Analysis

514

Amino Acids

58.4

Weight (kDa)

6.17

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 64 - 491 3.5e-87 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AccI GTMKAC 2 cut(s) 78, 1035
AccIII TCCGGA 1 cut(s) 816
AciI CCGC 3 cut(s) 338, 882, 1269
AclWI GGATC 5 cut(s) 977, 1082, 1259, 1439, 1508
AcsI RAATTY 1 cut(s) 925
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 1126
AfiI CCNNNNNNNGG 5 cut(s) 152, 379, 434, 992, 1346
AflII CTTAAG 1 cut(s) 1330
AflIII ACRYGT 1 cut(s) 1061
AgsI TTSAA 9 cut(s) 208, 465, 532, 616, 700, 866, 1235, 1432, 1460
AjnI CCWGG 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 1355, 1387
AluBI AGCT 5 cut(s) 486, 641, 696, 811, 1028
AluI AGCT 5 cut(s) 486, 641, 696, 811, 1028
Alw21I GWGCWC 1 cut(s) 1411
Alw26I GTCTC 2 cut(s) 1210, 1329
AlwI GGATC 5 cut(s) 977, 1082, 1259, 1439, 1508
AlwNI CAGNNNCTG 2 cut(s) 551, 1031
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 381, 1241
ApeKI GCWGC 2 cut(s) 599, 1025
ApoI RAATTY 1 cut(s) 925
ArsI GACNNNNNNTTYG 2 cut(s) 1188, 1220
AspA2I CCTAGG 1 cut(s) 1238
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 24, 382
AsuHPI GGTGA 5 cut(s) 135, 178, 549, 1246, 1403
AvaII GGWCC 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 1238
BanI GGYRCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 1411
BbvI GCAGC 2 cut(s) 611, 1037
BccI CCATC 2 cut(s) 118, 1101
BceAI ACGGC 2 cut(s) 381, 1071
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 630
BclI TGATCA 2 cut(s) 753, 1531
BcoDI GTCTC 2 cut(s) 1210, 1329
BfaI CTAG 2 cut(s) 21, 1239
BfmI CTRYAG 2 cut(s) 561, 1045
BfoI RGCGCY 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 1330
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 2 cut(s) 600, 1026
BlnI CCTAGG 1 cut(s) 1238
BlsI GCNGC 2 cut(s) 601, 1027
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 24, 382
BmiI GGNNCC 3 cut(s) 26, 277, 369
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 786
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpuEI CTTGAG 1 cut(s) 827
BsaAI YACGTR 1 cut(s) 1062
BsaBI GATNNNNATC 2 cut(s) 109, 1484
BsaHI GRCGYC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 1329
BsaJI CCNNGG 5 cut(s) 127, 498, 1099, 1238, 1340
BsaWI WCCGGW 1 cut(s) 816
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 379, 434, 992, 1346
Bse1I ACTGG 4 cut(s) 313, 352, 953, 1437
Bse3DI GCAATG 5 cut(s) 232, 292, 906, 1118, 1488
Bse8I GATNNNNATC 2 cut(s) 109, 1484
BseAI TCCGGA 1 cut(s) 816
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 5 cut(s) 127, 498, 1099, 1238, 1340
BseGI GGATG 1 cut(s) 1112
BseJI GATNNNNATC 2 cut(s) 109, 1484
BseLI CCNNNNNNNGG 5 cut(s) 152, 379, 434, 992, 1346
BseMI GCAATG 5 cut(s) 232, 292, 906, 1118, 1488
BseMII CTCAG 3 cut(s) 1098, 1173, 1518
BseNI ACTGG 4 cut(s) 313, 352, 953, 1437
BseRI GAGGAG 1 cut(s) 1175
BseXI GCAGC 2 cut(s) 611, 1037
BsgI GTGCAG 1 cut(s) 1044
BshFI GGCC 2 cut(s) 383, 1243
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 1411
BsiSI CCGG 1 cut(s) 817
BslFI GGGAC 2 cut(s) 10, 1066
BslI CCNNNNNNNGG 5 cut(s) 152, 379, 434, 992, 1346
BsmAI GTCTC 2 cut(s) 1210, 1329
BsmFI GGGAC 2 cut(s) 10, 1066
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 2 cut(s) 383, 1243
Bso31I GGTCTC 1 cut(s) 1329
Bsp1286I GDGCHC 1 cut(s) 1411
Bsp13I TCCGGA 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 1124
BspACI CCGC 3 cut(s) 338, 882, 1269
BspANI GGCC 2 cut(s) 383, 1243
BspCNI CTCAG 3 cut(s) 1097, 1174, 1517
BspEI TCCGGA 1 cut(s) 816
BspHI TCATGA 3 cut(s) 1273, 1516, 1528
BspLI GGNNCC 3 cut(s) 26, 277, 369
BspPI GGATC 5 cut(s) 977, 1082, 1259, 1439, 1508
BspT107I GGYRCC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 1330
BspTNI GGTCTC 1 cut(s) 1329
BsrDI GCAATG 5 cut(s) 232, 292, 906, 1118, 1488
BsrGI TGTACA 1 cut(s) 1124
BsrI ACTGG 4 cut(s) 313, 352, 953, 1437
BssECI CCNNGG 5 cut(s) 127, 498, 1099, 1238, 1340
BssNI GRCGYC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 763
BssT1I CCWWGG 3 cut(s) 498, 1238, 1340
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 1033, 1049
BstACI GRCGYC 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 1330
BstAPI GCANNNNNTGC 2 cut(s) 509, 1394
BstAUI TGTACA 1 cut(s) 1124
BstBAI YACGTR 1 cut(s) 1062
BstC8I GCNNGC 3 cut(s) 597, 945, 1119
BstDEI CTNAG 5 cut(s) 482, 875, 1084, 1182, 1504
BstF5I GGATG 1 cut(s) 1112
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstMAI GTCTC 2 cut(s) 1210, 1329
BstMWI GCNNNNNNNGC 4 cut(s) 67, 282, 509, 1394
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 2 cut(s) 561, 1045
BstV1I GCAGC 2 cut(s) 611, 1037
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 3 cut(s) 1087, 1444, 1500
BstYI RGATCY 3 cut(s) 1087, 1444, 1500
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 383, 1243
BtsCI GGATG 1 cut(s) 1112
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 6 cut(s) 306, 345, 783, 960, 1054, 1444
Cac8I GCNNGC 3 cut(s) 597, 945, 1119
CaiI CAGNNNCTG 2 cut(s) 551, 1031
CciI TCATGA 3 cut(s) 1273, 1516, 1528
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 24, 382
Csp6I GTAC 1 cut(s) 1125
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviAII CATG 7 cut(s) 603, 626, 797, 1274, 1415, 1517, 1529
CviQI GTAC 1 cut(s) 1125
DdeI CTNAG 5 cut(s) 482, 875, 1084, 1182, 1504
DinI GGCGCC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 829
Eco130I CCWWGG 3 cut(s) 498, 1238, 1340
Eco147I AGGCCT 1 cut(s) 1243
Eco31I GGTCTC 1 cut(s) 1329
Eco32I GATATC 4 cut(s) 123, 141, 479, 1279
Eco47I GGWCC 1 cut(s) 24
EcoO109I RGGNCCY 2 cut(s) 24, 382
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 4 cut(s) 123, 141, 479, 1279
EcoT14I CCWWGG 3 cut(s) 498, 1238, 1340
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 3 cut(s) 498, 1238, 1340
FaeI CATG 7 cut(s) 606, 629, 800, 1277, 1418, 1520, 1532
FalI AAGNNNNNCTT 4 cut(s) 858, 890, 1324, 1356
FaqI GGGAC 2 cut(s) 10, 1066
FatI CATG 7 cut(s) 602, 625, 796, 1273, 1414, 1516, 1528
FbaI TGATCA 2 cut(s) 753, 1531
FblI GTMKAC 2 cut(s) 78, 1035
Fnu4HI GCNGC 2 cut(s) 600, 1026
FokI GGATG 1 cut(s) 1119
Fsp4HI GCNGC 2 cut(s) 600, 1026
FspBI CTAG 2 cut(s) 21, 1239
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 600, 1026
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 2 cut(s) 383, 1243
HapII CCGG 1 cut(s) 817
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 7 cut(s) 606, 629, 800, 1277, 1418, 1520, 1532
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 4 cut(s) 17, 105, 554, 1203
HpaII CCGG 1 cut(s) 817
HphI GGTGA 5 cut(s) 135, 178, 549, 1246, 1403
Hpy166II GTNNAC 4 cut(s) 79, 304, 1036, 1125
Hpy188I TCNGA 4 cut(s) 1087, 1103, 1183, 1507
Hpy188III TCNNGA 9 cut(s) 817, 863, 1094, 1274, 1282, 1448, 1483, 1517, 1529
Hpy8I GTNNAC 4 cut(s) 79, 304, 1036, 1125
HpyAV CCTTC 5 cut(s) 156, 311, 860, 1188, 1211
HpyCH4III ACNGT 2 cut(s) 1033, 1049
HpyCH4IV ACGT 2 cut(s) 263, 1061
HpyCH4V TGCA 6 cut(s) 788, 837, 969, 1010, 1025, 1493
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 282, 509, 1394
HpyF3I CTNAG 5 cut(s) 482, 875, 1084, 1182, 1504
HpySE526I ACGT 2 cut(s) 263, 1061
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 7 cut(s) 606, 629, 800, 1277, 1418, 1520, 1532
HspAI GCGC 1 cut(s) 276
KasI GGCGCC 1 cut(s) 275
Kpn2I TCCGGA 1 cut(s) 816
Ksp22I TGATCA 2 cut(s) 753, 1531
LmnI GCTCC 5 cut(s) 295, 373, 491, 638, 1305
Lsp1109I GCAGC 2 cut(s) 611, 1037
LweI GCATC 1 cut(s) 656
MaeI CTAG 2 cut(s) 21, 1239
MaeII ACGT 2 cut(s) 263, 1061
MaeIII GTNAC 3 cut(s) 628, 709, 743
MboII GAAGA 8 cut(s) 43, 544, 645, 791, 1308, 1309, 1454, 1472
MfeI CAATTG 2 cut(s) 633, 1389
MflI RGATCY 3 cut(s) 1087, 1444, 1500
MhlI GDGCHC 1 cut(s) 1411
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 2 cut(s) 548, 1212
MmeI TCCRAC 2 cut(s) 262, 1010
MroI TCCGGA 1 cut(s) 816
MslI CAYNNNNRTG 1 cut(s) 899
MspCI CTTAAG 1 cut(s) 1330
MspI CCGG 1 cut(s) 817
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 2 cut(s) 633, 1389
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 67, 282, 509, 1394
NarI GGCGCC 1 cut(s) 276
NlaIII CATG 7 cut(s) 606, 629, 800, 1277, 1418, 1520, 1532
NlaIV GGNNCC 3 cut(s) 26, 277, 369
NmuCI GTSAC 1 cut(s) 709
PagI TCATGA 3 cut(s) 1273, 1516, 1528
PceI AGGCCT 1 cut(s) 1243
PctI GAATGC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 17, 105
PkrI GCNGC 2 cut(s) 601, 1027
PleI GAGTC 2 cut(s) 548, 1211
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 2 cut(s) 548, 1211
Ppu21I YACGTR 1 cut(s) 1062
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 26, 277, 369
PspPI GGNCC 2 cut(s) 24, 382
PspPPI RGGWCCY 1 cut(s) 24
PstNI CAGNNNCTG 2 cut(s) 551, 1031
PsuI RGATCY 3 cut(s) 1087, 1444, 1500
RsaI GTAC 1 cut(s) 1126
RsaNI GTAC 1 cut(s) 1125
RseI CAYNNNNRTG 1 cut(s) 899
SatI GCNGC 2 cut(s) 600, 1026
Sau96I GGNCC 2 cut(s) 24, 382
SchI GAGTC 2 cut(s) 548, 1212
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 1411
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 2 cut(s) 561, 1045
SfoI GGCGCC 1 cut(s) 277
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 2 cut(s) 806, 1330
SmoI CTYRAG 2 cut(s) 806, 1330
SseBI AGGCCT 1 cut(s) 1243
SsiI CCGC 3 cut(s) 338, 882, 1269
SspDI GGCGCC 1 cut(s) 275
SspI AATATT 2 cut(s) 1369, 1511
SspMI CTAG 2 cut(s) 21, 1239
StuI AGGCCT 1 cut(s) 1243
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 3 cut(s) 498, 1238, 1340
TaaI ACNGT 2 cut(s) 1033, 1049
TaiI ACGT 2 cut(s) 266, 1064
TaqI TCGA 4 cut(s) 777, 923, 1068, 1201
TatI WGTACW 1 cut(s) 1124
TfiI GAWTC 2 cut(s) 17, 105
TscAI CASTG 6 cut(s) 313, 352, 790, 960, 1054, 1444
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 2 cut(s) 599, 1025
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 5 cut(s) 17, 53, 243, 330, 385
TspRI CASTG 6 cut(s) 313, 352, 790, 960, 1054, 1444
Vha464I CTTAAG 1 cut(s) 1330
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 925
XcmI CCANNNNNNNNNTGG 4 cut(s) 36, 496, 632, 1182
XmaJI CCTAGG 1 cut(s) 1238
XmiI GTMKAC 2 cut(s) 78, 1035
XspI CTAG 2 cut(s) 21, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.