Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008673.1

Orthogroup ID

OG0009213

Physical Location & Seq

Genomic Coordinates Forward (+)

13307 .. 17973

Gene Structure 4667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008673.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgggccttatcataacaatgggcctcgcacgatccgttaccttccacaccacatcccgccgtataagccccaaacgtagcttgggtctacgggtatcgcatgagcttcaccagtttaatcgtggtcggtgttgggataatgattctatattatatgagtgccatcttcgtaacgtaagattaaagggagcagaaaataccaagttttgttttcttggggaaggaagattcgaagctgcaaagatagagccatccgaccgtaaaaggaagaaagcagcttcttccctctcagcagatcattcggacaataacaaagacaaaaggcagagaagcaccaagagcaaaaagacgaaaatgtcctcatcgaatcaggtcagggcatcccacatactgatcaagcaccaaggttccagaagaaaggcctcatggaaggatccagatggtgttgttatcagtaacaccacccgagatgcggctgtcactcaacttaagtcacttcgtgaggacattgtttctggcaagttcacgtttgacaatgttgctactcgcttctctgattgcagctctgccaagcgcggtggtgatcttggcccttttggccgcggccagatgcagaagcctttcgaagaggcaacattctctctcaaggttggggagataagtgaaattgtggatacagacagtggagttcatatcatcctgaggaccggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009909 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032879 GO:0032880 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04622 map04622

Pfam Domains

Protein Families

Rotamase

Protein Analysis

237

Amino Acids

26.49

Weight (kDa)

10.15

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18040
fragaria_vesca	FvH4_6g24550
malus_domestica	MD04G1047200.v1.1 MD08G1077500.v1.1
prunus_persica	Prupe.1G202600_v2.0.a1 Prupe.1G202600_v2.0.a1
pyrus_communis	pycom04g04110 pycom13g26680
rosa_chinensis	RchiOBHm_Chr3g0483651
rosa_laevigata	RLG00000023261
rosa_multiflora	Rmu_co8484139.1_g000001 Rmu_sc0008673.1_g000005
rosa_roxburghii	Rroxscaffold_6G00398150
rosa_rugosa	Rorug03G0207800 Rorug03G0207900 Rorug03G0208000
rosa_samantha	Rh3AG256200 Rh3BG292900 Rh3CG290700 Rh3DG286500
rosa_wichuraiana	Rw0G012020 Rw3G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	2 cut(s)	576, 603
AciI	CCGC	5 cut(s)	58, 473, 576, 601, 603
AclWI	GGATC	3 cut(s)	27, 428, 441
AcoI	YGGCCR	2 cut(s)	598, 604
AdeI	CACNNNGTG	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflII	CTTAAG	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	707
AluBI	AGCT	5 cut(s)	81, 106, 236, 278, 564
AluI	AGCT	5 cut(s)	81, 106, 236, 278, 564
AlwI	GGATC	3 cut(s)	27, 428, 441
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	6 cut(s)	4, 22, 420, 589, 598, 604
ApeKI	GCWGC	3 cut(s)	236, 275, 561
AsiGI	ACCGGT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	4 cut(s)	4, 22, 590, 705
AsuHPI	GGTGA	2 cut(s)	101, 593
AsuII	TTCGAA	2 cut(s)	231, 624
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	705
AxyI	CCTNAGG	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	3 cut(s)	223, 287, 573
BccI	CCATC	3 cut(s)	171, 259, 434
BceAI	ACGGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	667
BglI	GCCNNNNNGGC	1 cut(s)	597
BisI	GCNGC	6 cut(s)	237, 276, 474, 562, 601, 604
BlsI	GCNGC	6 cut(s)	238, 277, 475, 563, 602, 605
Bme18I	GGWCC	1 cut(s)	705
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	4 cut(s)	4, 22, 590, 705
BmiI	GGNNCC	2 cut(s)	409, 435
BmsI	GCATC	3 cut(s)	389, 460, 600
Bpu14I	TTCGAA	2 cut(s)	231, 624
BpuEI	CTTGAG	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	403, 601
BsaWI	WCCGGW	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	701
BseDI	CCNNGG	2 cut(s)	403, 601
BseGI	GGATG	4 cut(s)	53, 251, 380, 696
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	303, 692
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	223, 287, 573
Bsh1236I	CGCG	2 cut(s)	576, 603
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	6 cut(s)	6, 24, 422, 591, 600, 606
BshTI	ACCGGT	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	472
BsnI	GGCC	6 cut(s)	6, 24, 422, 591, 600, 606
BsoBI	CYCGRG	1 cut(s)	465
Bsp119I	TTCGAA	2 cut(s)	231, 624
Bsp143I	GATC	5 cut(s)	32, 295, 393, 433, 583
BspACI	CCGC	5 cut(s)	58, 473, 576, 601, 603
BspANI	GGCC	6 cut(s)	6, 24, 422, 591, 600, 606
BspCNI	CTCAG	2 cut(s)	302, 693
BspFNI	CGCG	2 cut(s)	576, 603
BspLI	GGNNCC	2 cut(s)	409, 435
BspPI	GGATC	3 cut(s)	27, 428, 441
BspT104I	TTCGAA	2 cut(s)	231, 624
BspTI	CTTAAG	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	403, 601
BssMI	GATC	5 cut(s)	32, 295, 393, 433, 583
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	260, 683
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	2 cut(s)	231, 624
BstDEI	CTNAG	2 cut(s)	289, 701
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	4 cut(s)	53, 251, 380, 696
BstFNI	CGCG	2 cut(s)	576, 603
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	5 cut(s)	35, 298, 396, 436, 586
BstMBI	GATC	5 cut(s)	32, 295, 393, 433, 583
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 339, 597
BstUI	CGCG	2 cut(s)	576, 603
BstV1I	GCAGC	3 cut(s)	223, 287, 573
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	701
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	6 cut(s)	6, 24, 422, 591, 600, 606
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	4 cut(s)	53, 251, 380, 696
BtsIMutI	CAGTG	1 cut(s)	688
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	4, 22, 590, 705
Cfr42I	CCGCGG	1 cut(s)	604
CspAI	ACCGGT	1 cut(s)	707
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	2 cut(s)	101, 426
DdeI	CTNAG	2 cut(s)	289, 701
DpnI	GATC	5 cut(s)	34, 297, 395, 435, 585
DpnII	GATC	5 cut(s)	32, 295, 393, 433, 583
DraIII	CACNNNGTG	1 cut(s)	500
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	598, 604
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	2 cut(s)	104, 429
FaiI	YATR	9 cut(s)	14, 65, 102, 149, 154, 156, 389, 427, 693
FatI	CATG	2 cut(s)	100, 425
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	237, 276, 474, 562, 601, 604
FokI	GGATG	4 cut(s)	40, 238, 367, 683
Fsp4HI	GCNGC	6 cut(s)	237, 276, 474, 562, 601, 604
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	6 cut(s)	237, 276, 474, 562, 601, 604
HaeIII	GGCC	6 cut(s)	6, 24, 422, 591, 600, 606
HapII	CCGG	1 cut(s)	708
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	2 cut(s)	104, 429
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HinfI	GANTC	3 cut(s)	143, 228, 367
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	2 cut(s)	101, 593
Hpy166II	GTNNAC	2 cut(s)	89, 525
Hpy188I	TCNGA	3 cut(s)	256, 304, 556
Hpy188III	TCNNGA	4 cut(s)	411, 437, 500, 700
Hpy8I	GTNNAC	2 cut(s)	89, 525
HpyAV	CCTTC	3 cut(s)	52, 215, 424
HpyCH4III	ACNGT	2 cut(s)	260, 683
HpyCH4IV	ACGT	3 cut(s)	76, 174, 527
HpyCH4V	TGCA	3 cut(s)	239, 561, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 339, 597
HpyF3I	CTNAG	2 cut(s)	289, 701
HpySE526I	ACGT	3 cut(s)	76, 174, 527
Hsp92II	CATG	2 cut(s)	104, 429
HspAI	GCGC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	32, 295, 393, 433, 583
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	125, 356, 361, 424, 450, 501, 620
Lsp1109I	GCAGC	3 cut(s)	223, 287, 573
LweI	GCATC	3 cut(s)	389, 460, 600
MaeII	ACGT	3 cut(s)	76, 174, 527
MaeIII	GTNAC	5 cut(s)	37, 170, 455, 478, 492
MalI	GATC	5 cut(s)	34, 297, 395, 435, 585
MboI	GATC	5 cut(s)	32, 295, 393, 433, 583
MboII	GAAGA	6 cut(s)	158, 237, 273, 280, 426, 638
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	1 cut(s)	666
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	7 cut(s)	35, 296, 370, 433, 496, 622, 696
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	3 cut(s)	117, 182, 489
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	603
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	708
MvnI	CGCG	2 cut(s)	576, 603
MwoI	GCNNNNNNNGC	3 cut(s)	66, 339, 597
NdeII	GATC	5 cut(s)	32, 295, 393, 433, 583
NlaIII	CATG	2 cut(s)	104, 429
NlaIV	GGNNCC	2 cut(s)	409, 435
NmuCI	GTSAC	2 cut(s)	478, 492
NspV	TTCGAA	2 cut(s)	231, 624
PceI	AGGCCT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	143, 228, 367
PinAI	ACCGGT	1 cut(s)	707
PkrI	GCNGC	6 cut(s)	238, 277, 475, 563, 602, 605
PspN4I	GGNNCC	2 cut(s)	409, 435
PspPI	GGNCC	4 cut(s)	4, 22, 590, 705
PsuI	RGATCY	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	117, 182, 489
SatI	GCNGC	6 cut(s)	237, 276, 474, 562, 601, 604
Sau3AI	GATC	5 cut(s)	32, 295, 393, 433, 583
Sau96I	GGNCC	4 cut(s)	4, 22, 590, 705
SfaNI	GCATC	3 cut(s)	389, 460, 600
SfiI	GGCCNNNNNGGCC	1 cut(s)	597
Sfr303I	CCGCGG	1 cut(s)	604
SfuI	TTCGAA	2 cut(s)	231, 624
SgrBI	CCGCGG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	488, 644
SmoI	CTYRAG	2 cut(s)	488, 644
Sse9I	AATT	1 cut(s)	666
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	5 cut(s)	58, 473, 576, 601, 603
StuI	AGGCCT	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	260, 683
TaiI	ACGT	3 cut(s)	79, 177, 530
TaqI	TCGA	3 cut(s)	231, 365, 624
TasI	AATT	1 cut(s)	666
TauI	GCSGC	3 cut(s)	476, 603, 606
TfiI	GAWTC	3 cut(s)	143, 228, 367
Tru1I	TTAA	3 cut(s)	117, 182, 489
Tru9I	TTAA	3 cut(s)	117, 182, 489
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	2 cut(s)	478, 492
TseI	GCWGC	3 cut(s)	236, 275, 561
Tsp45I	GTSAC	2 cut(s)	478, 492
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	705
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 119
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.