AT2G18860

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009458
Physical Location & Seq
Forward (+)
8163942 .. 8166006
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18860.1

Sequence Viewer

Length: 891 bp
ATGATGGTAGTGAACAGCTTTGATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGAAGAGGTTCAAAAATCTACAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAAGAAAGATGAGATTTGTAAGGAACTTCAAGCAGCTTTAGGTACAGCTAAATGGCAGTTGGAGGAGTTTGAGAAGGCAGTGAGATTGAGTCATAAACGGTGTGGGGATAATGATTCTTCATCCACACGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTCATCGCGTAGAAACTTCTCTGCAAGAAGCTTATAGTGAAAATGGGAAAAAGCCTCTCCGTTGGGTTGATCTTAATGAAGAAGAGCGTGATGACTTAGCAATGTTTCTCTCTGGATCTTCTCGAACTTCACAGAGTTTTAGTGGTGAGAGCAGCATCAAGTCGAGAGAGTCTACTAATAGTTCTCTAGTTGAAAACGTTATGGAAGTTTCAGCTAAAGTAACATTCAAGAAAGCTAAAGTTTATGGTGATGGCTCTGAGTGTGTCATAGACATTGAAGAAAGAGTGACACCTGGCCAAGCAGAGAAATCAGTTGGGCTGAGAAGAATATGGAGTTCACCAAATTTCAATTCTTTGAGAATTATAGTTCCTGGTGGTGATAATGAAGAAGAAAAGGAGACATTGGTGGCACAAATAGAAGCGACGCCTAAAGTTAAAGGAACTAAGTCTGTATTGTGGATGCAGAGACTTCCTGATCATAATCAGCTCTTTGACAAGACCGGTTGCTTTCAAAATCCGATACGCTTACCGTTTAATCACCCGATCAAGTTTATTGTTTCCTTATTGCTAATGGTGTTTCTACTATTACCCTTCGTAGTGTATTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

296

Amino Acids

33.78

Weight (kDa)

5.87

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 13 - 98 1.6e-16 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 452
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 264
AclI AACGTT 1 cut(s) 477
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 704
AfaI GTAC 1 cut(s) 160
AgeI ACCGGT 1 cut(s) 779
AgsI TTSAA 8 cut(s) 68, 146, 272, 473, 508, 557, 628, 791
AjnI CCWGG 2 cut(s) 571, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
AluBI AGCT 8 cut(s) 18, 56, 152, 164, 311, 494, 515, 766
AluI AGCT 8 cut(s) 18, 56, 152, 164, 311, 494, 515, 766
Alw26I GTCTC 2 cut(s) 671, 739
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 3 cut(s) 53, 149, 432
ApoI RAATTY 1 cut(s) 622
AsiGI ACCGGT 1 cut(s) 779
Asp700I GAANNNNTTC 1 cut(s) 63
AsuHPI GGTGA 5 cut(s) 437, 539, 609, 668, 809
BalI TGGCCA 1 cut(s) 576
BbvI GCAGC 3 cut(s) 65, 161, 444
BccI CCATC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 573, 651
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 671, 739
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 2 cut(s) 51, 75
BisI GCNGC 3 cut(s) 54, 150, 433
BlsI GCNGC 3 cut(s) 55, 151, 434
Bme1390I CCNGG 2 cut(s) 573, 651
BmrFI CCNGG 2 cut(s) 573, 651
BmsI GCATC 2 cut(s) 444, 729
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 704
BsaWI WCCGGW 1 cut(s) 779
Bse118I RCCGGY 1 cut(s) 779
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 2 cut(s) 573, 651
BseGI GGATG 2 cut(s) 236, 744
BseJI GATNNNNATC 1 cut(s) 759
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 528, 590
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 65, 161, 444
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 576
BshTI ACCGGT 1 cut(s) 779
BsiSI CCGG 1 cut(s) 780
BsmAI GTCTC 2 cut(s) 671, 739
BsnI GGCC 1 cut(s) 576
Bsp143I GATC 5 cut(s) 22, 349, 395, 754, 822
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 2 cut(s) 529, 591
BspFNI CGCG 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 779
BssAI RCCGGY 1 cut(s) 779
BssMI GATC 5 cut(s) 22, 349, 395, 754, 822
BssNI GRCGYC 1 cut(s) 704
Bst2UI CCWGG 2 cut(s) 573, 651
Bst4CI ACNGT 3 cut(s) 216, 255, 810
Bst6I CTCTTC 2 cut(s) 54, 357
BstACI GRCGYC 1 cut(s) 704
BstDEI CTNAG 4 cut(s) 376, 537, 599, 723
BstF5I GGATG 2 cut(s) 236, 744
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 5 cut(s) 25, 352, 398, 757, 825
BstMAI GTCTC 2 cut(s) 671, 739
BstMBI GATC 5 cut(s) 22, 349, 395, 754, 822
BstNI CCWGG 2 cut(s) 573, 651
BstSCI CCNGG 2 cut(s) 571, 649
BstSFI CTRYAG 2 cut(s) 51, 75
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 65, 161, 444
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 236, 744
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 779
CseI GACGC 1 cut(s) 712
Csp6I GTAC 1 cut(s) 159
CspAI ACCGGT 1 cut(s) 779
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 4 cut(s) 376, 537, 599, 723
DpnI GATC 5 cut(s) 24, 351, 397, 756, 824
DpnII GATC 5 cut(s) 22, 349, 395, 754, 822
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 54, 357
EarI CTCTTC 2 cut(s) 54, 357
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 571, 649
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 3 cut(s) 54, 150, 433
FokI GGATG 2 cut(s) 223, 751
Fsp4HI GCNGC 3 cut(s) 54, 150, 433
FspBI CTAG 1 cut(s) 467
GluI GCNGC 3 cut(s) 54, 150, 433
HaeIII GGCC 1 cut(s) 576
HapII CCGG 1 cut(s) 780
HgaI GACGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 704
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 5 cut(s) 89, 205, 230, 280, 449
HpaII CCGG 1 cut(s) 780
HphI GGTGA 5 cut(s) 437, 539, 609, 668, 809
Hpy166II GTNNAC 3 cut(s) 13, 453, 617
Hpy188I TCNGA 2 cut(s) 538, 798
Hpy188III TCNNGA 6 cut(s) 393, 402, 444, 508, 752, 888
Hpy8I GTNNAC 3 cut(s) 13, 453, 617
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 2 cut(s) 184, 880
HpyCH4III ACNGT 3 cut(s) 216, 255, 810
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 53, 304, 742
HpyF3I CTNAG 4 cut(s) 376, 537, 599, 723
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 1 cut(s) 704
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 5 cut(s) 22, 349, 395, 754, 822
LguI GCTCTTC 1 cut(s) 357
LpnPI CCDG 8 cut(s) 290, 378, 558, 585, 636, 663, 765, 793
Lsp1109I GCAGC 3 cut(s) 65, 161, 444
LweI GCATC 2 cut(s) 444, 729
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 259, 499, 565
MalI GATC 5 cut(s) 24, 351, 397, 756, 824
MboI GATC 5 cut(s) 22, 349, 395, 754, 822
MflI RGATCY 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 3 cut(s) 622, 628, 639
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 3 cut(s) 98, 214, 458
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 55, 172, 345
Mox20I TGGCCA 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 576
MseI TTAA 3 cut(s) 354, 714, 813
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 780
MspR9I CCNGG 2 cut(s) 573, 651
MvaI CCWGG 2 cut(s) 573, 651
MvnI CGCG 1 cut(s) 288
NdeII GATC 5 cut(s) 22, 349, 395, 754, 822
NmuCI GTSAC 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 230, 280
PinAI ACCGGT 1 cut(s) 779
PkrI GCNGC 3 cut(s) 55, 151, 434
PleI GAGTC 3 cut(s) 97, 213, 457
PpsI GAGTC 3 cut(s) 97, 213, 457
Psp1406I AACGTT 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 571, 649
PspGI CCWGG 2 cut(s) 571, 649
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 354, 714, 813
SatI GCNGC 3 cut(s) 54, 150, 433
Sau3AI GATC 5 cut(s) 22, 349, 395, 754, 822
SchI GAGTC 3 cut(s) 98, 214, 458
ScrFI CCNGG 2 cut(s) 573, 651
SfaNI GCATC 2 cut(s) 444, 729
SfcI CTRYAG 2 cut(s) 51, 75
Sse9I AATT 3 cut(s) 622, 628, 639
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 571, 649
TaaI ACNGT 3 cut(s) 216, 255, 810
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 403, 443
TasI AATT 3 cut(s) 622, 628, 639
TfiI GAWTC 2 cut(s) 230, 280
Tru1I TTAA 3 cut(s) 354, 714, 813
Tru9I TTAA 3 cut(s) 354, 714, 813
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 3 cut(s) 53, 149, 432
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 4 cut(s) 225, 272, 372, 678
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 201
XapI RAATTY 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.