Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009458

Physical Location & Seq

Genomic Coordinates Forward (+)

19747235 .. 19750358

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGGTCGCAAGCAGTTTTGATCTTTGGAAAAAGGACGTCTTCTTTCCTGCAGCTGAGGAGGTCCAAGAATCAGCTGACATAATGGAATCTACGTACAGGGTATGGGTTCGACAGAGGAGTGAAAGGCTAGCACCAAAACATTTGGATGAACTCTGTAGGGAGCTGCAAACTGCTTTAGGTACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGATTGAGCTATGGACAACATGGTGATGATCATACAGCAGCTAGACATGGACAATTTATTACTGCTATTGAAAACCAAATTTCCCAAGTTGAAACAGCACTAAGGGAATCGTTTAGTGTGGAAGGAAAGCAACCCCTTCGATGGGTACAGCTGGATGAAGAAGAACATGATGATTTTGCTGCATTTCTCTCTGGGACATCCCAAAGTATGCAAACTGCCAAAAATGAATGTCTAGAACTAGGACCTTGTAGGAGCAGCTCTGGGGAAAGTGACATTAGAAGAAAAGAGATGAACCTTAAATCTAGTGCTGCATGCAATGGAGACATCTCTGATGAAATAAAGGGTGTTAAAGATGTTATTACTCTTTCCAAGGATCCAAATTTCGTCATGGAATCGAAAGGAAAAGAAATTGCAGGAATGAGGGATGATATATTTTATGATACAGAAAAAACAACTAATACAAGGAAGGCATGCAGCTCACCAAATTATGGTGAGCTGAGGATTGTAATAGCGGATGAAGTTGAACAGAGAAGAAATCTAATTCCGGGATATGAGGACACACCCAAAGAAAAACGATCTAAACTTGTCTTCTGGAGGCAAAAGTGTGGGCAATTGCATCTGGGAACTGGAGCAGTTAATTTGTTCAACCAGATGTTTGGTCGGGTTGGTGCATCTCAGAAGCAATTGCAAAGTCCACGGAAGCAATGGCAGACACCACTACGCTTGAACAATCGTTGTTCAGTTCAAGCTACCCTTGGTTTGATGCTCACTGTTTTTTTGCTTGTACCGTTTGTATTTTATTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

344

Amino Acids

38.99

Weight (kDa)

5.98

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18860 AT2G18860 AT2G18860 AT4G30240
fragaria_vesca	FvH4_4g08300 FvH4_4g08300 FvH4_4g08300 FvH4_4g08300
malus_domestica	MD13G1255100.v1.1 MD16G1258200.v1.1
prunus_persica	Prupe.1G086200_v2.0.a1
pyrus_communis	pycom13g22400
rosa_chinensis	RchiOBHm_Chr4g0402571
rosa_laevigata	RLG00000009067
rosa_multiflora	Rmu_ssc0000330.1_g000061
rosa_roxburghii	Rroxscaffold_5G00347280
rosa_rugosa	Rorug04G0036600 Rorug04G0036600
rosa_samantha	Rh4AG114200 Rh4BG106400 Rh4DG106200
rosa_wichuraiana	Rw4G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	710
AciI	CCGC	1 cut(s)	734
AclWI	GGATC	2 cut(s)	590, 603
AcsI	RAATTY	2 cut(s)	300, 601
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	4 cut(s)	98, 184, 369, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	363, 364, 710
AgsI	TTSAA	7 cut(s)	293, 314, 746, 868, 949, 968, 1026
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	2 cut(s)	590, 603
ApeKI	GCWGC	7 cut(s)	53, 166, 260, 401, 477, 530, 696
ApoI	RAATTY	2 cut(s)	300, 601
AspS9I	GGNCC	2 cut(s)	64, 464
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	3 cut(s)	257, 693, 725
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	64, 464
BamHI	GGATCC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	34, 802
BbvCI	CCTCAGC	2 cut(s)	57, 719
BbvI	GCAGC	7 cut(s)	65, 153, 272, 388, 489, 517, 708
BccI	CCATC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	5 cut(s)	131, 264, 455, 461, 525
BfmI	CTRYAG	2 cut(s)	51, 157
BisI	GCNGC	7 cut(s)	54, 167, 261, 402, 478, 531, 697
BlsI	GCNGC	7 cut(s)	55, 168, 262, 403, 479, 532, 698
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	64, 464
BmgT120I	GGNCC	2 cut(s)	64, 464
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	3 cut(s)	847, 902, 975
BmtI	GCTAGC	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	34, 802
BpmI	CTGGAG	2 cut(s)	835, 870
Bpu10I	CCTNAGC	2 cut(s)	57, 719
BpuMI	CCSGG	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	591, 917, 976
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 364, 710
Bse1I	ACTGG	1 cut(s)	853
Bse3DI	GCAATG	2 cut(s)	544, 932
BseDI	CCNNGG	3 cut(s)	591, 917, 976
BseGI	GGATG	5 cut(s)	154, 382, 419, 652, 742
BseLI	CCNNNNNNNGG	3 cut(s)	363, 364, 710
BseMI	GCAATG	2 cut(s)	544, 932
BseMII	CTCAG	3 cut(s)	48, 710, 911
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	2 cut(s)	74, 133
BseXI	GCAGC	7 cut(s)	65, 153, 272, 388, 489, 517, 708
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	363, 364, 710
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	22, 250, 595, 797
BspACI	CCGC	1 cut(s)	734
BspCNI	CTCAG	3 cut(s)	49, 711, 910
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	590, 603
BsrDI	GCAATG	2 cut(s)	544, 932
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	591, 917, 976
BssMI	GATC	4 cut(s)	22, 250, 595, 797
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	591, 976
Bst4CI	ACNGT	2 cut(s)	994, 1011
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	13, 132, 535, 694
BstDEI	CTNAG	4 cut(s)	57, 323, 719, 897
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	5 cut(s)	154, 382, 419, 652, 742
BstKTI	GATC	4 cut(s)	25, 253, 598, 800
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	4 cut(s)	22, 250, 595, 797
BstNSI	RCATGY	2 cut(s)	537, 696
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	2 cut(s)	51, 157
BstSNI	TACGTA	1 cut(s)	96
BstV1I	GCAGC	7 cut(s)	65, 153, 272, 388, 489, 517, 708
BstV2I	GAAGAC	2 cut(s)	34, 802
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	5 cut(s)	154, 382, 419, 652, 742
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	4 cut(s)	13, 132, 535, 694
Cfr13I	GGNCC	2 cut(s)	64, 464
Csp6I	GTAC	4 cut(s)	97, 183, 368, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	927, 962
CviAII	CATG	6 cut(s)	242, 269, 389, 534, 610, 693
CviQI	GTAC	4 cut(s)	97, 183, 368, 1007
DdeI	CTNAG	4 cut(s)	57, 323, 719, 897
DpnI	GATC	4 cut(s)	24, 252, 597, 799
DpnII	GATC	4 cut(s)	22, 250, 595, 797
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco105I	TACGTA	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	591, 976
Eco47I	GGWCC	2 cut(s)	64, 464
EcoO109I	RGGNCCY	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	591, 976
ErhI	CCWWGG	2 cut(s)	591, 976
FaeI	CATG	6 cut(s)	245, 272, 392, 537, 613, 696
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 960, 992
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	6 cut(s)	241, 268, 388, 533, 609, 692
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	7 cut(s)	54, 167, 261, 402, 478, 531, 697
FokI	GGATG	5 cut(s)	161, 389, 406, 659, 749
Fsp4HI	GCNGC	7 cut(s)	54, 167, 261, 402, 478, 531, 697
FspBI	CTAG	5 cut(s)	131, 264, 455, 461, 525
GluI	GCNGC	7 cut(s)	54, 167, 261, 402, 478, 531, 697
GsuI	CTGGAG	2 cut(s)	835, 870
HapII	CCGG	1 cut(s)	767
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	245, 272, 392, 537, 613, 696
HinfI	GANTC	4 cut(s)	71, 89, 329, 614
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	3 cut(s)	257, 693, 725
Hpy166II	GTNNAC	1 cut(s)	917
Hpy188I	TCNGA	3 cut(s)	224, 553, 900
Hpy188III	TCNNGA	2 cut(s)	455, 814
Hpy8I	GTNNAC	1 cut(s)	917
HpyAV	CCTTC	4 cut(s)	208, 338, 368, 682
HpyCH4III	ACNGT	2 cut(s)	994, 1011
HpyCH4IV	ACGT	2 cut(s)	39, 95
HpyF3I	CTNAG	4 cut(s)	57, 323, 719, 897
HpySE526I	ACGT	2 cut(s)	39, 95
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	6 cut(s)	245, 272, 392, 537, 613, 696
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	22, 250, 595, 797
LmnI	GCTCC	3 cut(s)	163, 474, 851
Lsp1109I	GCAGC	7 cut(s)	65, 153, 272, 388, 489, 517, 708
LweI	GCATC	3 cut(s)	847, 902, 975
MaeI	CTAG	5 cut(s)	131, 264, 455, 461, 525
MaeII	ACGT	2 cut(s)	39, 95
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	24, 252, 597, 799
MboI	GATC	4 cut(s)	22, 250, 595, 797
MboII	GAAGA	7 cut(s)	34, 215, 392, 395, 513, 765, 802
MfeI	CAATTG	2 cut(s)	833, 905
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	9 cut(s)	275, 300, 601, 630, 706, 762, 833, 859, 905
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	52, 55, 111, 636, 714, 769, 810
MseI	TTAA	4 cut(s)	519, 570, 858, 1030
MslI	CAYNNNNRTG	2 cut(s)	147, 246
MspA1I	CMGCKG	3 cut(s)	56, 77, 373
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	2 cut(s)	833, 905
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	4 cut(s)	22, 250, 595, 797
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	6 cut(s)	245, 272, 392, 537, 613, 696
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	2 cut(s)	537, 696
PaeI	GCATGC	2 cut(s)	537, 696
PfeI	GAWTC	4 cut(s)	71, 89, 329, 614
PflMI	CCANNNNNTGG	1 cut(s)	710
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	7 cut(s)	55, 168, 262, 403, 479, 532, 698
Ppu21I	YACGTR	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	64, 464
PspPPI	RGGWCCY	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	3 cut(s)	56, 77, 373
RsaI	GTAC	4 cut(s)	98, 184, 369, 1008
RsaNI	GTAC	4 cut(s)	97, 183, 368, 1007
RseI	CAYNNNNRTG	2 cut(s)	147, 246
SaqAI	TTAA	4 cut(s)	519, 570, 858, 1030
SatI	GCNGC	7 cut(s)	54, 167, 261, 402, 478, 531, 697
Sau3AI	GATC	4 cut(s)	22, 250, 595, 797
Sau96I	GGNCC	2 cut(s)	64, 464
ScrFI	CCNGG	1 cut(s)	768
SfaNI	GCATC	3 cut(s)	847, 902, 975
SfcI	CTRYAG	2 cut(s)	51, 157
SinI	GGWCC	2 cut(s)	64, 464
SmiMI	CAYNNNNRTG	2 cut(s)	147, 246
SnaBI	TACGTA	1 cut(s)	96
SphI	GCATGC	2 cut(s)	537, 696
Sse9I	AATT	9 cut(s)	275, 300, 601, 630, 706, 762, 833, 859, 905
SsiI	CCGC	1 cut(s)	734
SspMI	CTAG	5 cut(s)	131, 264, 455, 461, 525
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	591, 976
TaaI	ACNGT	2 cut(s)	994, 1011
TaiI	ACGT	2 cut(s)	42, 98
TaqI	TCGA	3 cut(s)	112, 361, 617
TasI	AATT	9 cut(s)	275, 300, 601, 630, 706, 762, 833, 859, 905
TfiI	GAWTC	4 cut(s)	71, 89, 329, 614
Tru1I	TTAA	4 cut(s)	519, 570, 858, 1030
Tru9I	TTAA	4 cut(s)	519, 570, 858, 1030
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	7 cut(s)	53, 166, 260, 401, 477, 530, 696
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	6 cut(s)	165, 393, 462, 527, 570, 753
TspGWI	ACGGA	1 cut(s)	934
TspRI	CASTG	1 cut(s)	997
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	64, 464
XapI	RAATTY	2 cut(s)	300, 601
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	2 cut(s)	537, 696
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 924
XspI	CTAG	5 cut(s)	131, 264, 455, 461, 525
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.