Rroxscaffold_5G00347280

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009458
Physical Location & Seq
Reverse (-)
18600190 .. 18604607
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347280.1

Sequence Viewer

Length: 1050 bp
ATGTTGGTGGCAAACAGTTTCGATCTTTGGAAGAAAGACGTGTTCTTTCCTGCAGCTGAGGAGGTGCAAGAATCAGCTGATATAATGGAATCCACATATAGGGCATGGGCTCGAGAGAGGAGAGAAAGTGTAGCACCGGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCGTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTACAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCGCCAAAAATGATCGTGTAGAACTTGGACCTTGTGTGAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGATGTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAACGAGTGTTAAAGATACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAATGGGAAAGAAATTCCAGGAACTAGGGATGATATCATTTATCATGCTGATAGAACAACTAATACAAGGAAAACTTGGGGCTCACCAAATTGTGAATTGAGGATTATCGTAGCTGATGAAGCTGAGCAGAGGACACAGGTAATGCCAAGCTTAGAGGATACACGCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCACGGTTGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCGATTACGCTTGCATTACGGTCGTTCTGTTCAAGACTCTGTTGGTGCATTCATGGAAGAATTGGAAAAAGTACTCAAAACTGTAAATTGGGTTGTATATCAAGGCAAGAACACAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

349

Amino Acids

39.72

Weight (kDa)

5.75

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 13 - 105 2.7e-21 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 4 cut(s) 300, 601, 630, 827
AfaI GTAC 2 cut(s) 369, 1002
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 293, 314, 862, 962
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 634
AlwI GGATC 2 cut(s) 590, 603
Ama87I CYCGRG 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 53, 166, 401, 530
ApoI RAATTY 4 cut(s) 300, 601, 630, 827
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 3 cut(s) 464, 613, 795
AsuHPI GGTGA 2 cut(s) 257, 693
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 3 cut(s) 464, 613, 795
BamHI GGATCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 112, 701
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 65, 153, 388, 517
BccI CCATC 1 cut(s) 915
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 1 cut(s) 250
BfaI CTAG 3 cut(s) 264, 374, 642
BfmI CTRYAG 2 cut(s) 51, 157
BfoI RGCGCY 1 cut(s) 441
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 4 cut(s) 54, 167, 402, 531
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 4 cut(s) 55, 168, 403, 532
BmcAI AGTACT 1 cut(s) 1002
Bme1390I CCNGG 1 cut(s) 636
Bme18I GGWCC 3 cut(s) 464, 613, 795
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 464, 613, 795
BmiI GGNNCC 2 cut(s) 597, 796
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 2 cut(s) 338, 896
Bpu10I CCTNAGC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 805, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 636
BseGI GGATG 3 cut(s) 154, 419, 652
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 48, 474, 732
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 4 cut(s) 65, 153, 388, 517
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 977
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 112, 701
Bsp143I GATC 4 cut(s) 22, 250, 448, 595
Bsp1720I GCTNAGC 1 cut(s) 741
BspCNI CTCAG 3 cut(s) 49, 475, 733
BspLI GGNNCC 2 cut(s) 597, 796
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 2 cut(s) 590, 603
BssMI GATC 4 cut(s) 22, 250, 448, 595
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 4 cut(s) 17, 880, 950, 1012
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 535, 941
BstDEI CTNAG 5 cut(s) 57, 397, 483, 741, 769
BstF5I GGATG 3 cut(s) 154, 419, 652
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 4 cut(s) 25, 253, 451, 598
BstMBI GATC 4 cut(s) 22, 250, 448, 595
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 3 cut(s) 326, 737, 845
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 634
BstSFI CTRYAG 2 cut(s) 51, 157
BstV1I GCAGC 4 cut(s) 65, 153, 388, 517
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 934
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 3 cut(s) 154, 419, 652
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 343
Cac8I GCNNGC 2 cut(s) 535, 941
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 3 cut(s) 464, 613, 795
Csp6I GTAC 2 cut(s) 368, 1001
CviAII CATG 5 cut(s) 105, 308, 610, 662, 982
CviQI GTAC 2 cut(s) 368, 1001
DdeI CTNAG 5 cut(s) 57, 397, 483, 741, 769
DpnI GATC 4 cut(s) 24, 252, 450, 597
DpnII GATC 4 cut(s) 22, 250, 448, 595
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 112, 701
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 3 cut(s) 464, 613, 795
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 634
EcoRV GATATC 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 112, 701
FaeI CATG 5 cut(s) 108, 311, 613, 665, 985
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 676, 708
FaqI GGGAC 1 cut(s) 430
FatI CATG 5 cut(s) 104, 307, 609, 661, 981
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 54, 167, 402, 531
FokI GGATG 3 cut(s) 161, 406, 659
FriOI GRGCYC 2 cut(s) 112, 701
Fsp4HI GCNGC 4 cut(s) 54, 167, 402, 531
FspBI CTAG 3 cut(s) 264, 374, 642
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 54, 167, 402, 531
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 441
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 440
Hin1II CATG 5 cut(s) 108, 311, 613, 665, 985
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 766
HinfI GANTC 3 cut(s) 71, 89, 965
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 257, 693
Hpy166II GTNNAC 2 cut(s) 514, 911
Hpy188I TCNGA 3 cut(s) 484, 553, 600
Hpy188III TCNNGA 2 cut(s) 113, 962
Hpy8I GTNNAC 2 cut(s) 514, 911
HpyAV CCTTC 2 cut(s) 208, 338
HpyCH4III ACNGT 4 cut(s) 17, 880, 950, 1012
HpyCH4IV ACGT 2 cut(s) 39, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 737, 845
HpyF3I CTNAG 5 cut(s) 57, 397, 483, 741, 769
HpySE526I ACGT 2 cut(s) 39, 241
Hsp92II CATG 5 cut(s) 108, 311, 613, 665, 985
HspAI GCGC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 4 cut(s) 22, 250, 448, 595
LmnI GCTCC 2 cut(s) 163, 845
Lsp1109I GCAGC 4 cut(s) 65, 153, 388, 517
LweI GCATC 2 cut(s) 338, 896
MaeI CTAG 3 cut(s) 264, 374, 642
MaeII ACGT 2 cut(s) 39, 241
MalI GATC 4 cut(s) 24, 252, 450, 597
MboI GATC 4 cut(s) 22, 250, 448, 595
MboII GAAGA 7 cut(s) 43, 152, 215, 392, 395, 513, 998
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 112, 701
MlyI GAGTC 1 cut(s) 959
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 52, 55, 111, 478, 711, 741, 766
MseI TTAA 6 cut(s) 323, 519, 570, 585, 591, 852
MspA1I CMGCKG 3 cut(s) 56, 77, 868
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 977
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 3 cut(s) 326, 737, 845
NdeII GATC 4 cut(s) 22, 250, 448, 595
NlaIII CATG 5 cut(s) 108, 311, 613, 665, 985
NlaIV GGNNCC 2 cut(s) 597, 796
PaeR7I CTCGAG 1 cut(s) 111
PctI GAATGC 1 cut(s) 977
PfeI GAWTC 2 cut(s) 71, 89
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 4 cut(s) 55, 168, 403, 532
PleI GAGTC 1 cut(s) 959
PpsI GAGTC 1 cut(s) 959
PshBI ATTAAT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 597, 796
PspPI GGNCC 3 cut(s) 464, 613, 795
PsrI GAACNNNNNNTAC 2 cut(s) 664, 696
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 3 cut(s) 56, 77, 868
RsaI GTAC 2 cut(s) 369, 1002
RsaNI GTAC 2 cut(s) 368, 1001
SaqAI TTAA 6 cut(s) 323, 519, 570, 585, 591, 852
SatI GCNGC 4 cut(s) 54, 167, 402, 531
Sau3AI GATC 4 cut(s) 22, 250, 448, 595
Sau96I GGNCC 3 cut(s) 464, 613, 795
ScaI AGTACT 1 cut(s) 1002
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 2 cut(s) 112, 701
SfaNI GCATC 2 cut(s) 338, 896
SfcI CTRYAG 2 cut(s) 51, 157
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 3 cut(s) 464, 613, 795
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SspI AATATT 1 cut(s) 589
SspMI CTAG 3 cut(s) 264, 374, 642
StyD4I CCNGG 1 cut(s) 634
TaaI ACNGT 4 cut(s) 17, 880, 950, 1012
TaiI ACGT 2 cut(s) 42, 244
TaqI TCGA 3 cut(s) 21, 112, 931
TatI WGTACW 1 cut(s) 1000
TfiI GAWTC 2 cut(s) 71, 89
Tru1I TTAA 6 cut(s) 323, 519, 570, 585, 591, 852
Tru9I TTAA 6 cut(s) 323, 519, 570, 585, 591, 852
TscAI CASTG 2 cut(s) 190, 343
TseI GCWGC 4 cut(s) 53, 166, 401, 530
TspDTI ATGAA 6 cut(s) 165, 393, 570, 750, 821, 970
TspRI CASTG 2 cut(s) 190, 343
VpaK11BI GGWCC 3 cut(s) 464, 613, 795
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 4 cut(s) 300, 601, 630, 827
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 918
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 3 cut(s) 264, 374, 642
ZrmI AGTACT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.