Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009458

Physical Location & Seq

Genomic Coordinates Reverse (-)

6409324 .. 6413835

Gene Structure 4512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGGTGGCAAGCAGTTTTGATCTTTGGAAAAAAGATGTCTTCTTTCCTGCAGCTGAGGAGGTGCAAGAATCAGCTGATATAATGGAATCCACGTACAGGGCATGGGTTCGACAGAAGAGAGAAAGGTTAGCACCAGACAATTTGGATGAACTTTGTAGGGAGCTGCAAACCGCTTTAGGTACTGCCAAATGGCAGTTGGAAGAGTTCGAGAAAGCAGTCAGGTTGAGCTATGGACAACGCGGTGATGATCATACAACAGCTAGACATAAACAATTTATTGCTGCCATTGAAAACCAAATTTCTCATGTTGAAACAGCATTAAGGGAATCATTTAGTGTGGAAGGAAAGCAACCCCTTCGATGGGTACACCTGGATGAAGAAGAATGTGATGATTTTGCTGCATTTCTGTCTGGGACACCACAAAGTTTGCTATGTGCCAAAAATGAATATGTAGAACTTGGACCTTCTGTGAAAAGCTCCGAGGAAAATGACTTTAGAAGAAAAGACGTGGACCTTAAATCTAATGCTGCCTGCAGCAGAGACATTTCTGATGAAATAAAGGGGGTTAAAGATGTTATTACTATATCTAAGGATCTAAATTTTGTCATGGAAGTAAAGGGGAAAGAAATCGCAGAAATGAGGGATGATATAATTTATGATGCAGATAGAACAACTAATACAAGGAAGGCATGCAGTTCACCAAATTATGGTGATTTGAGGATCATAATAGCTGATGAAGTTGAACACAGAAAAAAACTAATTCCGGGGTGCGAGGACACACCTAAAGAAAAAGGATCCAAACTTGTCTTCTGGAAGCAAAGGTGTGCGCAATTGCATCAGGCAACAGCAGCAGTTAATTTGTTCAACCAGCTGTTTGGTCGGGTTGGTGCATCTCAGAAGCAATTACAAAGTCCACAGAAACAATGGCAAACACCACTACGCTTACATAATCGTTGTTCTGTTCAAGCTACTCTTGGTTTAATGCTCACTGTTTTCCTGCTTGTACCATTTGTATTTTATTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

344

Amino Acids

39.14

Weight (kDa)

5.78

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18860 AT2G18860 AT2G18860 AT4G30240
fragaria_vesca	FvH4_4g08300 FvH4_4g08300 FvH4_4g08300 FvH4_4g08300
malus_domestica	MD13G1255100.v1.1 MD16G1258200.v1.1
prunus_persica	Prupe.1G086200_v2.0.a1
pyrus_communis	pycom13g22400
rosa_chinensis	RchiOBHm_Chr4g0402571
rosa_laevigata	RLG00000009067
rosa_multiflora	Rmu_ssc0000330.1_g000061
rosa_roxburghii	Rroxscaffold_5G00347280
rosa_rugosa	Rorug04G0036600 Rorug04G0036600
rosa_samantha	Rh4AG114200 Rh4BG106400 Rh4DG106200
rosa_wichuraiana	Rw4G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	831
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccII	CGCG	1 cut(s)	243
AciI	CCGC	2 cut(s)	174, 243
AclWI	GGATC	4 cut(s)	603, 731, 792, 805
AcsI	RAATTY	2 cut(s)	300, 601
AfaI	GTAC	4 cut(s)	98, 184, 369, 1008
AfiI	CCNNNNNNNGG	4 cut(s)	99, 363, 364, 710
AgsI	TTSAA	6 cut(s)	293, 314, 746, 868, 968, 1026
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	4 cut(s)	603, 731, 792, 805
ApeKI	GCWGC	7 cut(s)	53, 166, 284, 401, 530, 537, 851
ApoI	RAATTY	2 cut(s)	300, 601
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	2 cut(s)	464, 514
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	3 cut(s)	257, 693, 725
AvaII	GGWCC	2 cut(s)	464, 514
BamHI	GGATCC	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	34, 802
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	7 cut(s)	65, 153, 271, 388, 517, 549, 863
BccI	CCATC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	51, 535
BisI	GCNGC	7 cut(s)	54, 167, 285, 402, 531, 538, 852
BlsI	GCNGC	7 cut(s)	55, 168, 286, 403, 532, 539, 853
Bme1390I	CCNGG	2 cut(s)	374, 768
Bme18I	GGWCC	2 cut(s)	464, 514
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	464, 514
BmiI	GGNNCC	1 cut(s)	799
BmrFI	CCNGG	2 cut(s)	374, 768
BmsI	GCATC	3 cut(s)	652, 847, 902
BpiI	GAAGAC	2 cut(s)	34, 802
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	483, 767
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 363, 364, 710
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	483, 767
BseGI	GGATG	3 cut(s)	154, 382, 652
BseLI	CCNNNNNNNGG	4 cut(s)	99, 363, 364, 710
BseMII	CTCAG	2 cut(s)	48, 911
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	7 cut(s)	65, 153, 271, 388, 517, 549, 863
Bsh1236I	CGCG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	4 cut(s)	99, 363, 364, 710
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	22, 250, 595, 723, 797
BspACI	CCGC	2 cut(s)	174, 243
BspCNI	CTCAG	2 cut(s)	49, 910
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	799
BspMAI	CTGCAG	2 cut(s)	55, 539
BspPI	GGATC	4 cut(s)	603, 731, 792, 805
BssECI	CCNNGG	2 cut(s)	483, 767
BssMI	GATC	5 cut(s)	22, 250, 595, 723, 797
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	994
Bst6I	CTCTTC	2 cut(s)	113, 198
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	13, 535, 694
BstDEI	CTNAG	3 cut(s)	57, 591, 897
BstF5I	GGATG	3 cut(s)	154, 382, 652
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	5 cut(s)	25, 253, 598, 726, 800
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	5 cut(s)	22, 250, 595, 723, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	851
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	696
BstSCI	CCNGG	2 cut(s)	372, 766
BstSFI	CTRYAG	2 cut(s)	51, 535
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	7 cut(s)	65, 153, 271, 388, 517, 549, 863
BstV2I	GAAGAC	2 cut(s)	34, 802
BstX2I	RGATCY	2 cut(s)	595, 797
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	2 cut(s)	595, 797
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	154, 382, 652
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	3 cut(s)	13, 535, 694
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	464, 514
Csp6I	GTAC	4 cut(s)	97, 183, 368, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	4 cut(s)	105, 308, 610, 693
CviQI	GTAC	4 cut(s)	97, 183, 368, 1007
DdeI	CTNAG	3 cut(s)	57, 591, 897
DpnI	GATC	5 cut(s)	24, 252, 597, 725, 799
DpnII	GATC	5 cut(s)	22, 250, 595, 723, 797
Eam1104I	CTCTTC	2 cut(s)	113, 198
EarI	CTCTTC	2 cut(s)	113, 198
Eco47I	GGWCC	2 cut(s)	464, 514
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	108, 311, 613, 696
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	104, 307, 609, 692
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	7 cut(s)	54, 167, 285, 402, 531, 538, 852
FokI	GGATG	3 cut(s)	161, 389, 659
Fsp4HI	GCNGC	7 cut(s)	54, 167, 285, 402, 531, 538, 852
FspBI	CTAG	1 cut(s)	264
FspI	TGCGCA	1 cut(s)	831
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	7 cut(s)	54, 167, 285, 402, 531, 538, 852
HapII	CCGG	1 cut(s)	767
HhaI	GCGC	1 cut(s)	832
Hin1II	CATG	4 cut(s)	108, 311, 613, 696
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HinfI	GANTC	3 cut(s)	71, 89, 329
HpaII	CCGG	1 cut(s)	767
HphI	GGTGA	3 cut(s)	257, 693, 725
Hpy166II	GTNNAC	4 cut(s)	370, 514, 701, 917
Hpy188I	TCNGA	3 cut(s)	484, 553, 900
Hpy188III	TCNNGA	2 cut(s)	211, 814
Hpy8I	GTNNAC	4 cut(s)	370, 514, 701, 917
HpyAV	CCTTC	4 cut(s)	338, 368, 477, 682
HpyCH4III	ACNGT	1 cut(s)	994
HpyCH4IV	ACGT	2 cut(s)	95, 510
HpyCH4V	TGCA	9 cut(s)	53, 67, 169, 404, 537, 665, 696, 838, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	851
HpyF3I	CTNAG	3 cut(s)	57, 591, 897
HpySE526I	ACGT	2 cut(s)	95, 510
Hsp92II	CATG	4 cut(s)	108, 311, 613, 696
HspAI	GCGC	1 cut(s)	830
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	22, 250, 595, 723, 797
LmnI	GCTCC	2 cut(s)	163, 485
Lsp1109I	GCAGC	7 cut(s)	65, 153, 271, 388, 517, 549, 863
LweI	GCATC	3 cut(s)	652, 847, 902
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	95, 510
MalI	GATC	5 cut(s)	24, 252, 597, 725, 799
MboI	GATC	5 cut(s)	22, 250, 595, 723, 797
MboII	GAAGA	7 cut(s)	34, 130, 215, 392, 395, 513, 802
MfeI	CAATTG	1 cut(s)	833
MflI	RGATCY	2 cut(s)	595, 797
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	52, 55, 478, 636, 714, 769
MseI	TTAA	5 cut(s)	323, 519, 570, 858, 983
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	3 cut(s)	56, 77, 874
MspI	CCGG	1 cut(s)	767
MspR9I	CCNGG	2 cut(s)	374, 768
MunI	CAATTG	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	851
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	5 cut(s)	22, 250, 595, 723, 797
NlaIII	CATG	4 cut(s)	108, 311, 613, 696
NlaIV	GGNNCC	1 cut(s)	799
NsbI	TGCGCA	1 cut(s)	831
NspI	RCATGY	1 cut(s)	696
PaeI	GCATGC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	71, 89, 329
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	7 cut(s)	55, 168, 286, 403, 532, 539, 853
Ppu21I	YACGTR	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	799
PspPI	GGNCC	2 cut(s)	464, 514
PsrI	GAACNNNNNNTAC	2 cut(s)	664, 696
PstI	CTGCAG	2 cut(s)	55, 539
PsuI	RGATCY	2 cut(s)	595, 797
PvuII	CAGCTG	3 cut(s)	56, 77, 874
RsaI	GTAC	4 cut(s)	98, 184, 369, 1008
RsaNI	GTAC	4 cut(s)	97, 183, 368, 1007
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	323, 519, 570, 858, 983
SatI	GCNGC	7 cut(s)	54, 167, 285, 402, 531, 538, 852
Sau3AI	GATC	5 cut(s)	22, 250, 595, 723, 797
Sau96I	GGNCC	2 cut(s)	464, 514
ScrFI	CCNGG	2 cut(s)	374, 768
SfaNI	GCATC	3 cut(s)	652, 847, 902
SfcI	CTRYAG	2 cut(s)	51, 535
SinI	GGWCC	2 cut(s)	464, 514
SmiMI	CAYNNNNRTG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	696
SsiI	CCGC	2 cut(s)	174, 243
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	372, 766
TaaI	ACNGT	1 cut(s)	994
TaiI	ACGT	2 cut(s)	98, 513
TaqI	TCGA	3 cut(s)	112, 210, 361
TfiI	GAWTC	3 cut(s)	71, 89, 329
Tru1I	TTAA	5 cut(s)	323, 519, 570, 858, 983
Tru9I	TTAA	5 cut(s)	323, 519, 570, 858, 983
TscAI	CASTG	1 cut(s)	997
TseI	GCWGC	7 cut(s)	53, 166, 284, 401, 530, 537, 851
TspDTI	ATGAA	5 cut(s)	165, 393, 462, 570, 753
TspRI	CASTG	1 cut(s)	997
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	464, 514
XapI	RAATTY	2 cut(s)	300, 601
XceI	RCATGY	1 cut(s)	696
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 924
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.