RchiOBHm_Chr4g0402571

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009458
Physical Location & Seq
Reverse (-)
21159862 .. 21165054
5193 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37435

Sequence Viewer

Length: 1026 bp
ATGTTGGTGGCAAACAGTTTCGATCTTTGGAAGAAAGACGTGTTCTTTCCCGCAGCTGAGGAGGTGCAAGAATCAGCTGATATAATGGAATCCACGTATAGGGCATGGGCTCGAGAGAGGAGAGAAAGTGTAGCACCGGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCCTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTAGAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCGCCAAAAATGATCATGTAGAACTTGGACCTTCTGTGAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGAAGTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAAAGGGTGTTAAAGATACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAGCGGGAAAGAAATGCCAGGAACTAGGGATGATATCGTTTATCATGCTGATAGAACAACTAATACAAGGAAAACATGGGGCTCACCAAATTGTGAATTGAGGATTATCGTAGCTGATGAAGCTGAGCAGAGAACACAGGTAATGCCAAGCTTAGAGGATACACCCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCAGGGTTGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCCATTACGCTTGCATTACGGTCGTTCTGTTCAAGTCACCCTCGTTTTAATGCTCACTTTTTTCCTGCTTGTACCATTTGTGTTCTATTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

341

Amino Acids

38.79

Weight (kDa)

5.7

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 13 - 105 2.6e-21 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 621
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 3 cut(s) 300, 601, 827
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 5 cut(s) 293, 314, 862, 962, 1020
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 634
AlwI GGATC 2 cut(s) 590, 603
Ama87I CYCGRG 1 cut(s) 111
ApeKI GCWGC 4 cut(s) 53, 166, 401, 530
ApoI RAATTY 3 cut(s) 300, 601, 827
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 4 cut(s) 464, 613, 795, 929
AsuHPI GGTGA 3 cut(s) 257, 693, 958
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 4 cut(s) 464, 613, 795, 929
BamHI GGATCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 112, 701
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 65, 153, 388, 517
BccI CCATC 1 cut(s) 915
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 1 cut(s) 636
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 2 cut(s) 250, 448
BfaI CTAG 3 cut(s) 264, 374, 642
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 441
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 4 cut(s) 54, 167, 402, 531
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 4 cut(s) 55, 168, 403, 532
Bme1390I CCNGG 1 cut(s) 636
Bme18I GGWCC 4 cut(s) 464, 613, 795, 929
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 464, 613, 795, 929
BmiI GGNNCC 2 cut(s) 597, 796
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 2 cut(s) 338, 896
Bpu10I CCTNAGC 2 cut(s) 57, 617
Bpu1102I GCTNAGC 1 cut(s) 741
BsaAI YACGTR 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 805, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 636
BseGI GGATG 4 cut(s) 154, 329, 419, 652
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 48, 474, 732
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 4 cut(s) 65, 153, 388, 517
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 952
BsiEI CGRYCG 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 112, 701
Bsp143I GATC 4 cut(s) 22, 250, 448, 595
Bsp1720I GCTNAGC 1 cut(s) 741
BspACI CCGC 2 cut(s) 51, 621
BspCNI CTCAG 3 cut(s) 49, 475, 733
BspLI GGNNCC 2 cut(s) 597, 796
BspPI GGATC 2 cut(s) 590, 603
BssMI GATC 4 cut(s) 22, 250, 448, 595
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 2 cut(s) 17, 950
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 535, 941
BstDEI CTNAG 6 cut(s) 57, 397, 483, 617, 741, 769
BstF5I GGATG 4 cut(s) 154, 329, 419, 652
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 4 cut(s) 25, 253, 451, 598
BstMBI GATC 4 cut(s) 22, 250, 448, 595
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 3 cut(s) 326, 737, 845
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 634
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 65, 153, 388, 517
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 934
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 4 cut(s) 154, 329, 419, 652
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 343
Cac8I GCNNGC 2 cut(s) 535, 941
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 4 cut(s) 464, 613, 795, 929
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 6 cut(s) 105, 308, 452, 610, 662, 693
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 6 cut(s) 57, 397, 483, 617, 741, 769
DpnI GATC 4 cut(s) 24, 252, 450, 597
DpnII GATC 4 cut(s) 22, 250, 448, 595
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 112, 701
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 4 cut(s) 464, 613, 795, 929
Eco57I CTGAAG 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 634
EcoRV GATATC 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 112, 701
FaeI CATG 6 cut(s) 108, 311, 455, 613, 665, 696
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 430
FatI CATG 6 cut(s) 104, 307, 451, 609, 661, 692
FauI CCCGC 2 cut(s) 58, 614
FbaI TGATCA 2 cut(s) 250, 448
Fnu4HI GCNGC 4 cut(s) 54, 167, 402, 531
FokI GGATG 4 cut(s) 161, 316, 406, 659
FriOI GRGCYC 2 cut(s) 112, 701
Fsp4HI GCNGC 4 cut(s) 54, 167, 402, 531
FspBI CTAG 3 cut(s) 264, 374, 642
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 54, 167, 402, 531
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 441
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 440
Hin1II CATG 6 cut(s) 108, 311, 455, 613, 665, 696
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 766
HinfI GANTC 2 cut(s) 71, 89
HpaII CCGG 1 cut(s) 137
HphI GGTGA 3 cut(s) 257, 693, 958
Hpy166II GTNNAC 2 cut(s) 514, 911
Hpy188I TCNGA 3 cut(s) 484, 553, 600
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 514, 911
HpyAV CCTTC 4 cut(s) 208, 338, 343, 477
HpyCH4III ACNGT 2 cut(s) 17, 950
HpyCH4IV ACGT 3 cut(s) 39, 95, 241
HpyCH4V TGCA 8 cut(s) 67, 169, 329, 341, 404, 537, 887, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 737, 845
HpyF3I CTNAG 6 cut(s) 57, 397, 483, 617, 741, 769
HpySE526I ACGT 3 cut(s) 39, 95, 241
Hsp92II CATG 6 cut(s) 108, 311, 455, 613, 665, 696
HspAI GCGC 1 cut(s) 438
Ksp22I TGATCA 2 cut(s) 250, 448
Kzo9I GATC 4 cut(s) 22, 250, 448, 595
LmnI GCTCC 2 cut(s) 163, 845
Lsp1109I GCAGC 4 cut(s) 65, 153, 388, 517
LweI GCATC 2 cut(s) 338, 896
MaeI CTAG 3 cut(s) 264, 374, 642
MaeII ACGT 3 cut(s) 39, 95, 241
MaeIII GTNAC 1 cut(s) 964
MalI GATC 4 cut(s) 24, 252, 450, 597
MboI GATC 4 cut(s) 22, 250, 448, 595
MboII GAAGA 6 cut(s) 43, 152, 215, 392, 395, 513
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 112, 701
MluCI AATT 8 cut(s) 275, 300, 538, 601, 706, 713, 827, 853
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 52, 55, 111, 478, 711, 766, 980
MseI TTAA 7 cut(s) 323, 519, 570, 585, 591, 852, 977
MspA1I CMGCKG 3 cut(s) 56, 77, 868
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 3 cut(s) 326, 737, 845
NdeII GATC 4 cut(s) 22, 250, 448, 595
NlaIII CATG 6 cut(s) 108, 311, 455, 613, 665, 696
NlaIV GGNNCC 2 cut(s) 597, 796
NmuCI GTSAC 1 cut(s) 964
PaeR7I CTCGAG 1 cut(s) 111
PfeI GAWTC 2 cut(s) 71, 89
PkrI GCNGC 4 cut(s) 55, 168, 403, 532
Ppu21I YACGTR 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 597, 796
PspPI GGNCC 4 cut(s) 464, 613, 795, 929
PsrI GAACNNNNNNTAC 2 cut(s) 664, 696
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 3 cut(s) 56, 77, 868
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
SaqAI TTAA 7 cut(s) 323, 519, 570, 585, 591, 852, 977
SatI GCNGC 4 cut(s) 54, 167, 402, 531
Sau3AI GATC 4 cut(s) 22, 250, 448, 595
Sau96I GGNCC 4 cut(s) 464, 613, 795, 929
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 2 cut(s) 112, 701
SfaNI GCATC 2 cut(s) 338, 896
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 111
SinI GGWCC 4 cut(s) 464, 613, 795, 929
SlaI CTCGAG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 8 cut(s) 275, 300, 538, 601, 706, 713, 827, 853
SsiI CCGC 2 cut(s) 51, 621
SspI AATATT 1 cut(s) 589
SspMI CTAG 3 cut(s) 264, 374, 642
StyD4I CCNGG 1 cut(s) 634
TaaI ACNGT 2 cut(s) 17, 950
TaiI ACGT 3 cut(s) 42, 98, 244
TaqI TCGA 2 cut(s) 21, 112
TasI AATT 8 cut(s) 275, 300, 538, 601, 706, 713, 827, 853
TfiI GAWTC 2 cut(s) 71, 89
Tru1I TTAA 7 cut(s) 323, 519, 570, 585, 591, 852, 977
Tru9I TTAA 7 cut(s) 323, 519, 570, 585, 591, 852, 977
TscAI CASTG 2 cut(s) 190, 343
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 4 cut(s) 53, 166, 401, 530
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 5 cut(s) 165, 393, 570, 750, 821
TspRI CASTG 2 cut(s) 190, 343
VpaK11BI GGWCC 4 cut(s) 464, 613, 795, 929
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 3 cut(s) 300, 601, 827
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 918
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 3 cut(s) 264, 374, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.