FvH4_4g08300

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009458
Physical Location & Seq
Reverse (-)
8186481 .. 8190734
4254 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08300.t1

Sequence Viewer

Length: 1026 bp
ATGTTGGTGGCCAACAGTTTCGATCTTTGGAAGAAAGATGTGTTCTTTCCTGCAGCTGAGGAGGTGCAAGAATCAGCTGACATAATGGAATCCACATATAGGGCATGGACCCGAAAGAGGAGAGAAAGTGTAGCGCCAGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATTGCCAATGCGGTGATGATCATACAACAGCTAGACATAAACAATTTATTTCTGCCATTGAAAATCAGATATCCCATGTTGAAACAGCATTAAGGGCATCGTTTAGTGCAGAAGGAAAGAAACAACTACGCTGGGTACAACTAGATGAAGAAGAATGTGATGATTTAGCTGCATTTCTCTCGGGAACATCCCATTGTCTTCCAAGTGCTGAAGATGAATATGTAGAACTTGGACCTTCTGTGAAAACCTTTGAGGAAAAGCCTATGAGAAGAAACGATCTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATTAAGGGCGTTACAGATACGATCATTACTATTAAGGATCCAAATTTTATGATGGACCTAAACGGGAAAGAAATGCCAGGAACAAGGGATGAAATAATTTATCATGCTGATAGAACAACTAATACAAGGAAAACACGGAGCTCACCAAATTGTGAATTGAGGATTATCATACCTGATGAAGCTGAGCAGAGAACACAGCTAATGCCAAGCTTTCAGGACACACCCAAAGAAAAAGGATCCAAACTTGTCTTTTGGAGAAGATGTGGAGAATTGCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCAGGGTTGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCCATTACGCTTGCAATATGGTCGTTCTGTTCAAGTCACCCTCGCTTTAATGCTCACTTTTTTCCTGCTTGTACCATTTATGTTCTCTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

342

Amino Acids

38.96

Weight (kDa)

5.47

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 13 - 105 1.7e-20 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclWI GGATC 4 cut(s) 590, 603, 789, 802
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 369, 1002
AfiI CCNNNNNNNGG 2 cut(s) 99, 117
AgsI TTSAA 5 cut(s) 293, 314, 862, 962, 1020
AjnI CCWGG 1 cut(s) 634
Alw21I GWGCWC 1 cut(s) 701
AlwI GGATC 4 cut(s) 590, 603, 789, 802
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 53, 166, 401, 530
ApoI RAATTY 1 cut(s) 601
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 4 cut(s) 108, 464, 613, 929
AsuHPI GGTGA 3 cut(s) 257, 693, 958
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 4 cut(s) 108, 464, 613, 929
BalI TGGCCA 1 cut(s) 11
BamHI GGATCC 2 cut(s) 595, 794
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 701
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 65, 153, 388, 517
BccI CCATC 2 cut(s) 604, 915
BcgI CGANNNNNNTGC 4 cut(s) 393, 427, 932, 966
BciT130I CCWGG 1 cut(s) 636
BclI TGATCA 1 cut(s) 250
BfaI CTAG 2 cut(s) 264, 374
BfmI CTRYAG 2 cut(s) 51, 157
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 4 cut(s) 54, 167, 402, 531
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 4 cut(s) 55, 168, 403, 532
Bme1390I CCNGG 1 cut(s) 636
Bme18I GGWCC 4 cut(s) 108, 464, 613, 929
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 4 cut(s) 108, 464, 613, 929
BmiI GGNNCC 3 cut(s) 110, 597, 796
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 3 cut(s) 338, 841, 896
BpiI GAAGAC 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 741
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 805, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 117
BseBI CCWGG 1 cut(s) 636
BseGI GGATG 3 cut(s) 154, 419, 652
BseLI CCNNNNNNNGG 2 cut(s) 99, 117
BseMII CTCAG 2 cut(s) 48, 732
BseRI GAGGAG 2 cut(s) 74, 133
BseXI GCAGC 4 cut(s) 65, 153, 388, 517
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 99, 117
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 701
Bsp143I GATC 6 cut(s) 22, 250, 508, 579, 595, 794
Bsp1720I GCTNAGC 1 cut(s) 741
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 49, 733
BspLI GGNNCC 3 cut(s) 110, 597, 796
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 4 cut(s) 590, 603, 789, 802
BssMI GATC 6 cut(s) 22, 250, 508, 579, 595, 794
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 198, 1021
BstC8I GCNNGC 2 cut(s) 535, 941
BstDEI CTNAG 2 cut(s) 57, 741
BstF5I GGATG 3 cut(s) 154, 419, 652
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 6 cut(s) 25, 253, 511, 582, 598, 797
BstMBI GATC 6 cut(s) 22, 250, 508, 579, 595, 794
BstMWI GCNNNNNNNGC 2 cut(s) 326, 845
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 634
BstSFI CTRYAG 2 cut(s) 51, 157
BstV1I GCAGC 4 cut(s) 65, 153, 388, 517
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 2 cut(s) 595, 794
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 595, 794
BsuRI GGCC 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 934
BtsCI GGATG 3 cut(s) 154, 419, 652
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 535, 941
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 4 cut(s) 108, 464, 613, 929
Csp6I GTAC 2 cut(s) 368, 1001
CviAII CATG 3 cut(s) 105, 308, 662
CviQI GTAC 2 cut(s) 368, 1001
DdeI CTNAG 2 cut(s) 57, 741
DpnI GATC 6 cut(s) 24, 252, 510, 581, 597, 796
DpnII GATC 6 cut(s) 22, 250, 508, 579, 595, 794
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 198, 1021
EarI CTCTTC 2 cut(s) 198, 1021
Ecl136II GAGCTC 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 701
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 4 cut(s) 108, 464, 613, 929
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 634
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 701
FaeI CATG 3 cut(s) 108, 311, 665
FatI CATG 3 cut(s) 104, 307, 661
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 54, 167, 402, 531
FokI GGATG 3 cut(s) 161, 406, 659
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 4 cut(s) 54, 167, 402, 531
FspBI CTAG 2 cut(s) 264, 374
GlaI GCGC 1 cut(s) 135
GluI GCNGC 4 cut(s) 54, 167, 402, 531
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 11
HhaI GCGC 1 cut(s) 136
Hin1II CATG 3 cut(s) 108, 311, 665
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 766
HinfI GANTC 2 cut(s) 71, 89
HphI GGTGA 3 cut(s) 257, 693, 958
Hpy166II GTNNAC 1 cut(s) 911
Hpy188I TCNGA 2 cut(s) 300, 553
Hpy188III TCNNGA 3 cut(s) 414, 512, 773
Hpy8I GTNNAC 1 cut(s) 911
HpyAV CCTTC 3 cut(s) 208, 338, 477
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 9 cut(s) 53, 67, 169, 341, 404, 537, 832, 887, 943
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 845
HpyF3I CTNAG 2 cut(s) 57, 741
Hsp92II CATG 3 cut(s) 108, 311, 665
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 6 cut(s) 22, 250, 508, 579, 595, 794
LmnI GCTCC 3 cut(s) 163, 696, 845
Lsp1109I GCAGC 4 cut(s) 65, 153, 388, 517
LweI GCATC 3 cut(s) 338, 841, 896
MaeI CTAG 2 cut(s) 264, 374
MaeIII GTNAC 2 cut(s) 568, 964
MalI GATC 6 cut(s) 24, 252, 510, 581, 597, 796
MboI GATC 6 cut(s) 22, 250, 508, 579, 595, 794
MflI RGATCY 2 cut(s) 595, 794
MhlI GDGCHC 1 cut(s) 701
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 9 cut(s) 275, 538, 558, 601, 654, 706, 713, 827, 853
MluNI TGGCCA 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 52, 55, 111, 478, 711, 980
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 6 cut(s) 323, 519, 561, 591, 852, 977
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 3 cut(s) 56, 77, 868
MspR9I CCNGG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 326, 845
NdeII GATC 6 cut(s) 22, 250, 508, 579, 595, 794
NlaIII CATG 3 cut(s) 108, 311, 665
NlaIV GGNNCC 3 cut(s) 110, 597, 796
NmuCI GTSAC 1 cut(s) 964
PfeI GAWTC 2 cut(s) 71, 89
PkrI GCNGC 4 cut(s) 55, 168, 403, 532
Psp124BI GAGCTC 1 cut(s) 701
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 110, 597, 796
PspPI GGNCC 4 cut(s) 108, 464, 613, 929
PsrI GAACNNNNNNTAC 2 cut(s) 664, 696
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 2 cut(s) 595, 794
PvuII CAGCTG 3 cut(s) 56, 77, 868
RsaI GTAC 2 cut(s) 369, 1002
RsaNI GTAC 2 cut(s) 368, 1001
SacI GAGCTC 1 cut(s) 701
SaqAI TTAA 6 cut(s) 323, 519, 561, 591, 852, 977
SatI GCNGC 4 cut(s) 54, 167, 402, 531
Sau3AI GATC 6 cut(s) 22, 250, 508, 579, 595, 794
Sau96I GGNCC 4 cut(s) 108, 464, 613, 929
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 3 cut(s) 338, 841, 896
SfcI CTRYAG 2 cut(s) 51, 157
SinI GGWCC 4 cut(s) 108, 464, 613, 929
Sse9I AATT 9 cut(s) 275, 538, 558, 601, 654, 706, 713, 827, 853
SsiI CCGC 1 cut(s) 243
SspMI CTAG 2 cut(s) 264, 374
SstI GAGCTC 1 cut(s) 701
StyD4I CCNGG 1 cut(s) 634
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 21
TasI AATT 9 cut(s) 275, 538, 558, 601, 654, 706, 713, 827, 853
TfiI GAWTC 2 cut(s) 71, 89
Tru1I TTAA 6 cut(s) 323, 519, 561, 591, 852, 977
Tru9I TTAA 6 cut(s) 323, 519, 561, 591, 852, 977
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 4 cut(s) 53, 166, 401, 530
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 6 cut(s) 165, 393, 462, 570, 663, 750
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 4 cut(s) 108, 464, 613, 929
XapI RAATTY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 918
XspI CTAG 2 cut(s) 264, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.