AT4G30240

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009458
Physical Location & Seq
Reverse (-)
14807889 .. 14810075
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30240.1

Sequence Viewer

Length: 903 bp
ATGATGGTAGCGAATAGTTTCGATCTATGGCAAAAGGATGTTTTTTTCTCTGCAGCTGAGGAGGTTCAAGAATCTGCTGATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAGAGAAGAGAGACGGTCGAGTATCCGTAGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTTGAGCACTGCTAAATGGCAGTTGGAAGAGTTTGAGAGGGCAGTGAGCTTAAGCCATGGAAATTGTCGAGATGACACTACCTTAACTAGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTTATCAAGTGGAATCTACTCTGCTAGAGTCGTTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGATGATCTCGCCATGTTTCTATCTGGATCTTCTCAGACGTCAGAGAGTTTAAACAGTGATAGCATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGAATCCACGTGGGATCAATGGCAGAAGAGAGGGTAGATGTTATGGCGACAGTCCTGATTGTGTGATAGACATTGACGACATAGGAAGTCCGGAAAGTGCAGATAAAAAAGGCGGTACAAGAAGAACATGGAGTTCACCAAATGTACCAAATATCAGTGCGTTGAGGATTAATGTCCCTGTTAATGCAAAAGAAGAAGAGAGGGAGAAGTTCCTATCACATATTGAAGACACTCCTAAAGAGAAAGGAGCTAAACCTATGTTTTGGCTGCAGAGATGTCGTGATTATAACCAGCTCTTTGACAGAGTCAAGGTTTATCAAAGACGATTTCGCGTTCCATTGAGCCGCCCTATTAAGCTCATTCTTTCCTTAACGCTAATCTTGATTCTTCTATTATTCATCTTGAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

300

Amino Acids

34.42

Weight (kDa)

5.4

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 13 - 105 8.1e-20 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AatII GACGTC 1 cut(s) 431
AccII CGCG 1 cut(s) 822
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 3 cut(s) 285, 603, 835
AclWI GGATC 3 cut(s) 378, 424, 512
AcvI CACGTG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 2 cut(s) 607, 636
AfiI CCNNNNNNNGG 1 cut(s) 264
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 68, 293, 716
AluBI AGCT 8 cut(s) 56, 154, 173, 225, 488, 740, 784, 847
AluI AGCT 8 cut(s) 56, 154, 173, 225, 488, 740, 784, 847
Alw21I GWGCWC 2 cut(s) 156, 185
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 3 cut(s) 378, 424, 512
Aor13HI TCCGGA 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 53, 173, 757
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 618
BanII GRGCYC 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 2 cut(s) 156, 185
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 65, 160, 744
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciVI GTATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 264, 326
BfmI CTRYAG 3 cut(s) 51, 483, 758
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 4 cut(s) 54, 174, 758, 835
BlsI GCNGC 4 cut(s) 55, 175, 759, 836
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 481
BsaAI YACGTR 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 48, 437, 480
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 65, 160, 744
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 822
Bsh1285I CGRYCG 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 156, 185
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 156, 185
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 5 cut(s) 22, 370, 394, 416, 504
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 3 cut(s) 285, 603, 835
BspCNI CTCAG 3 cut(s) 49, 436, 481
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 822
BspMAI CTGCAG 2 cut(s) 55, 762
BspPI GGATC 3 cut(s) 378, 424, 512
BspQI GCTCTTC 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 5 cut(s) 22, 370, 394, 416, 504
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 4 cut(s) 128, 276, 446, 542
Bst6I CTCTTC 5 cut(s) 113, 198, 378, 511, 681
BstACI GRCGYC 1 cut(s) 428
BstAFI CTTAAG 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 57, 423, 489
BstDSI CCRYGG 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 822
BstKTI GATC 5 cut(s) 25, 373, 397, 419, 507
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 5 cut(s) 22, 370, 394, 416, 504
BstMCI CGRYCG 1 cut(s) 130
BstSFI CTRYAG 3 cut(s) 51, 483, 758
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 3 cut(s) 65, 160, 744
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 2 cut(s) 370, 416
BstYI RGATCY 2 cut(s) 370, 416
BsuI GTATCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 2 cut(s) 183, 225
BtsIMutI CAGTG 4 cut(s) 183, 225, 451, 652
Csp6I GTAC 2 cut(s) 606, 635
CviAII CATG 3 cut(s) 233, 403, 618
CviQI GTAC 2 cut(s) 606, 635
DdeI CTNAG 3 cut(s) 57, 423, 489
DpnI GATC 5 cut(s) 24, 372, 396, 418, 506
DpnII GATC 5 cut(s) 22, 370, 394, 416, 504
DraI TTTAAA 2 cut(s) 112, 441
Eam1104I CTCTTC 5 cut(s) 113, 198, 378, 511, 681
EarI CTCTTC 5 cut(s) 113, 198, 378, 511, 681
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco72I CACGTG 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 236, 406, 621
FaqI GGGAC 1 cut(s) 650
FatI CATG 3 cut(s) 232, 402, 617
Fnu4HI GCNGC 4 cut(s) 54, 174, 758, 835
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 54, 174, 758, 835
FspBI CTAG 2 cut(s) 264, 326
GluI GCNGC 4 cut(s) 54, 174, 758, 835
HapII CCGG 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 3 cut(s) 236, 406, 621
HinfI GANTC 9 cut(s) 71, 89, 143, 314, 329, 467, 493, 795, 874
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 618
Hpy166II GTNNAC 1 cut(s) 626
Hpy188I TCNGA 3 cut(s) 148, 426, 433
Hpy188III TCNNGA 8 cut(s) 68, 245, 414, 545, 581, 770, 871, 892
Hpy8I GTNNAC 1 cut(s) 626
HpyCH4III ACNGT 4 cut(s) 128, 276, 446, 542
HpyCH4IV ACGT 2 cut(s) 428, 499
HpyCH4V TGCA 5 cut(s) 53, 159, 590, 677, 760
HpyF3I CTNAG 3 cut(s) 57, 423, 489
HpySE526I ACGT 2 cut(s) 428, 499
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 3 cut(s) 236, 406, 621
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 22, 370, 394, 416, 504
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 737
LpnPI CCDG 6 cut(s) 311, 399, 558, 594, 681, 794
Lsp1109I GCAGC 3 cut(s) 65, 160, 744
LweI GCATC 1 cut(s) 462
MaeI CTAG 2 cut(s) 264, 326
MaeII ACGT 2 cut(s) 428, 499
MaeIII GTNAC 1 cut(s) 280
MalI GATC 5 cut(s) 24, 372, 396, 418, 506
MboI GATC 5 cut(s) 22, 370, 394, 416, 504
MflI RGATCY 2 cut(s) 370, 416
MhlI GDGCHC 2 cut(s) 156, 185
MluCI AATT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 338, 804
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 7 cut(s) 52, 55, 207, 481, 514, 648, 684
MroI TCCGGA 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 1 cut(s) 581
MssI GTTTAAAC 1 cut(s) 441
MvnI CGCG 1 cut(s) 822
NcoI CCATGG 1 cut(s) 232
NdeII GATC 5 cut(s) 22, 370, 394, 416, 504
NlaIII CATG 3 cut(s) 236, 406, 621
PciSI GCTCTTC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 7 cut(s) 71, 89, 143, 314, 467, 493, 874
PflFI GACNNNGTC 1 cut(s) 794
PkrI GCNGC 4 cut(s) 55, 175, 759, 836
PleI GAGTC 2 cut(s) 337, 803
PmaCI CACGTG 1 cut(s) 500
PmeI GTTTAAAC 1 cut(s) 441
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 2 cut(s) 337, 803
Ppu21I YACGTR 1 cut(s) 500
PshBI ATTAAT 1 cut(s) 660
PsiI TTATAA 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 156
PspCI CACGTG 1 cut(s) 500
PstI CTGCAG 2 cut(s) 55, 762
PsuI RGATCY 2 cut(s) 370, 416
PsyI GACNNNGTC 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 607, 636
RsaNI GTAC 2 cut(s) 606, 635
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 4 cut(s) 54, 174, 758, 835
Sau3AI GATC 5 cut(s) 22, 370, 394, 416, 504
SchI GAGTC 2 cut(s) 338, 804
SduI GDGCHC 2 cut(s) 156, 185
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 3 cut(s) 51, 483, 758
SmlI CTYRAG 3 cut(s) 226, 460, 892
SmoI CTYRAG 3 cut(s) 226, 460, 892
Sse9I AATT 1 cut(s) 238
SsiI CCGC 3 cut(s) 285, 603, 835
SspMI CTAG 2 cut(s) 264, 326
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 4 cut(s) 128, 276, 446, 542
TaiI ACGT 2 cut(s) 431, 502
TaqI TCGA 3 cut(s) 21, 130, 244
TasI AATT 1 cut(s) 238
TauI GCSGC 1 cut(s) 837
TfiI GAWTC 7 cut(s) 71, 89, 143, 314, 467, 493, 874
TscAI CASTG 4 cut(s) 190, 225, 451, 652
TseI GCWGC 3 cut(s) 53, 173, 757
TspDTI ATGAA 1 cut(s) 877
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 4 cut(s) 190, 225, 451, 652
Tth111I GACNNNGTC 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 226
VspI ATTAAT 1 cut(s) 660
XagI CCTNNNNNAGG 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 2 cut(s) 264, 326
ZraI GACGTC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.