Rorug04G0036600

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009458
Physical Location & Seq
Forward (+)
5497615 .. 5499682
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0036600.1

Sequence Viewer

Length: 1479 bp
ATGTCCGCAAATCATAGAAGTGGTAGAGATCATACAGTTATCGATATTCTCGATGACAGCGAGAAAAGCACGAATTGCATCTTCAGAGTTCCTAACGTGCTCTGGAGACAAAATCCAAAAGCATATACACCTGATGTTGTTTCAATCGGACCTTTTCATCATTATCTAGAAAAGCGAGGGAAGAAGGAAGGTCAAGGAGGCAAGAAAGGCAATGGCGAAAAATATTTCCAACTTATGGAACGAGTGAAAACTCGCTATTTGAATGAAATTCTCGCTGGTATGCAGAATATAACTATGGAAGAGTTGACAGCCAAAGTTACTGAGCTCTCAGATCAAAAGAATGAAGGCGATTTTGAGCAACGCGCGCGCAATTTTTATGCAGAGCCACTTCATTTTTCCTCTGAAGAGTTCATCAAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTGACGATCCAAAACTCAGGGCCTTATATGACCCGGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTATCCACATTTTGTATGACCTTACCCATGATATATACCGTGATGAAGCTTCCCTCTCTATTCTCATCATGAAAGCGCTCAGCATACTACCATCACTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCCGAAACAATTGTCATTTTGCTGCTGATTATCTGCACATACTTGATCTGATAAGAAGTTCCATAGTAATTCCATTAAGGACCATAGAAGAGAGACCGCATAAAGCAGCTGGAAAAGAATCCATGTCCAACCCTGAAGAGCATGAAGTTGACTCTGGGAACAAACACAAGGGAAACAATGAAGTCGTTCATGAAGCTATCCTTGACCCAGATCTACACCAAATTCGTACCGCAAGCGAACTCTCAAAGGCAGACATTAAATTCAAAAGCGTCGAAAAGAAGAGCATAATGGACATCCAATTCAAAGAGGGTAGGTGGTACAGGAATGGGATTCTTGAGATTCCACCGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATTGAGCAATGCTACCATGGCTATTCAAACGAGATAACATCTTATGCTATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTCTGCAAGAAAAAAGTAATAGGTAACTTGATGAGTGATGAGGATGGCTGTAAGTTTTTCAGCAACCTTTACAAGGACATCCCGCACAACAAGTTCTACTATGTTGAGCTGTGCAAAAAAGTGAATGCTCGTTACAATATGAGATGGTATACATGGTTGGCTTTACTCAAGTTTGAAAAGTTTTCTAACCCCTGGAAGGTTTTGGCTTTCGTGGTAGCTATTATCGCTTTGACTCTCACCGCGTGGAGTCAGACAAACCTCATTCGGATTAACTGGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

492

Amino Acids

57.39

Weight (kDa)

7.29

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 27 - 477 2.2e-100 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 1343
AccII CGCG 4 cut(s) 363, 365, 367, 1436
AciI CCGC 7 cut(s) 6, 706, 803, 936, 1052, 1277, 1434
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 3 cut(s) 267, 927, 965
AcuI CTGAAG 4 cut(s) 67, 423, 692, 861
AdeI CACNNNGTG 1 cut(s) 1437
AfaI GTAC 2 cut(s) 934, 1025
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 3 cut(s) 235, 1267, 1390
AgsI TTSAA 9 cut(s) 144, 262, 449, 505, 970, 1009, 1128, 1176, 1370
AjnI CCWGG 1 cut(s) 1385
AluBI AGCT 6 cut(s) 325, 623, 815, 902, 1303, 1412
AluI AGCT 6 cut(s) 325, 623, 815, 902, 1303, 1412
Alw21I GWGCWC 2 cut(s) 102, 327
Alw26I GTCTC 2 cut(s) 100, 793
AlwI GGATC 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 2 cut(s) 728, 812
ApoI RAATTY 3 cut(s) 267, 927, 965
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 4 cut(s) 365, 367, 369, 652
AspS9I GGNCC 3 cut(s) 149, 483, 786
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 1423
AvaII GGWCC 2 cut(s) 149, 786
BanII GRGCYC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 102, 327
BbvI GCAGC 2 cut(s) 715, 824
BccI CCATC 3 cut(s) 673, 1232, 1332
BciT130I CCWGG 1 cut(s) 1387
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 2 cut(s) 100, 793
BfaI CTAG 2 cut(s) 167, 551
BfoI RGCGCY 1 cut(s) 653
BglII AGATCT 1 cut(s) 916
BisI GCNGC 2 cut(s) 729, 813
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 2 cut(s) 730, 814
Bme1390I CCNGG 2 cut(s) 497, 1387
Bme18I GGWCC 2 cut(s) 149, 786
BmgT120I GGNCC 3 cut(s) 149, 483, 786
BmiI GGNNCC 1 cut(s) 1091
BmrFI CCNGG 2 cut(s) 497, 1387
BmsI GCATC 2 cut(s) 87, 709
BpmI CTGGAG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 1061, 1346
BpuMI CCSGG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 3 cut(s) 566, 1117, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 1267, 1390
Bse1I ACTGG 1 cut(s) 1472
Bse3DI GCAATG 3 cut(s) 217, 1095, 1115
BseBI CCWGG 1 cut(s) 1387
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 566, 1117, 1385
BseGI GGATG 3 cut(s) 999, 1243, 1272
BseLI CCNNNNNNNGG 3 cut(s) 235, 1267, 1390
BseMI GCAATG 3 cut(s) 217, 1095, 1115
BseMII CTCAG 4 cut(s) 312, 342, 493, 667
BseNI ACTGG 1 cut(s) 1472
BsePI GCGCGC 2 cut(s) 363, 365
BseXI GCAGC 2 cut(s) 715, 824
BsgI GTGCAG 1 cut(s) 725
Bsh1236I CGCG 4 cut(s) 363, 365, 367, 1436
BshFI GGCC 1 cut(s) 485
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 102, 327
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 235, 1267, 1390
BsmAI GTCTC 2 cut(s) 100, 793
BsmI GAATGC 1 cut(s) 1324
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 793
Bsp1286I GDGCHC 2 cut(s) 102, 327
Bsp143I GATC 5 cut(s) 28, 331, 469, 751, 916
Bsp1720I GCTNAGC 1 cut(s) 653
Bsp19I CCATGG 1 cut(s) 1117
BspACI CCGC 7 cut(s) 6, 706, 803, 936, 1052, 1277, 1434
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 4 cut(s) 313, 341, 492, 666
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 4 cut(s) 363, 365, 367, 1436
BspHI TCATGA 2 cut(s) 642, 895
BspLI GGNNCC 1 cut(s) 1091
BspPI GGATC 1 cut(s) 464
BspQI GCTCTTC 2 cut(s) 837, 980
BspTNI GGTCTC 1 cut(s) 793
BsrDI GCAATG 3 cut(s) 217, 1095, 1115
BsrI ACTGG 1 cut(s) 1472
BssECI CCNNGG 3 cut(s) 566, 1117, 1385
BssHII GCGCGC 2 cut(s) 363, 365
BssMI GATC 5 cut(s) 28, 331, 469, 751, 916
BssNAI GTATAC 1 cut(s) 1344
BssT1I CCWWGG 2 cut(s) 566, 1117
Bst1107I GTATAC 1 cut(s) 1344
Bst2UI CCWGG 1 cut(s) 1387
Bst4CI ACNGT 5 cut(s) 37, 434, 453, 515, 614
Bst6I CTCTTC 6 cut(s) 294, 399, 789, 837, 980, 1177
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 365, 367, 940
BstDEI CTNAG 4 cut(s) 321, 328, 479, 653
BstDSI CCRYGG 1 cut(s) 1117
BstENI CCTNNNNNAGG 1 cut(s) 1265
BstF5I GGATG 3 cut(s) 999, 1243, 1272
BstFNI CGCG 4 cut(s) 363, 365, 367, 1436
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 4 cut(s) 365, 367, 369, 652
BstKTI GATC 5 cut(s) 31, 334, 472, 754, 919
BstMAI GTCTC 2 cut(s) 100, 793
BstMBI GATC 5 cut(s) 28, 331, 469, 751, 916
BstMWI GCNNNNNNNGC 6 cut(s) 66, 75, 207, 364, 1119, 1418
BstNI CCWGG 1 cut(s) 1387
BstSCI CCNGG 2 cut(s) 495, 1385
BstUI CGCG 4 cut(s) 363, 365, 367, 1436
BstV1I GCAGC 2 cut(s) 715, 824
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
BstZ17I GTATAC 1 cut(s) 1344
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 485
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 1117
BtsCI GGATG 3 cut(s) 999, 1243, 1272
BtsIMutI CAGTG 1 cut(s) 668
Cac8I GCNNGC 3 cut(s) 365, 367, 940
CciI TCATGA 2 cut(s) 642, 895
CfoI GCGC 4 cut(s) 365, 367, 369, 652
Cfr13I GGNCC 3 cut(s) 149, 483, 786
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 964
Csp6I GTAC 2 cut(s) 933, 1024
CviAII CATG 9 cut(s) 508, 536, 602, 643, 829, 848, 896, 1118, 1347
CviQI GTAC 2 cut(s) 933, 1024
DdeI CTNAG 4 cut(s) 321, 328, 479, 653
DpnI GATC 5 cut(s) 30, 333, 471, 753, 918
DpnII GATC 5 cut(s) 28, 331, 469, 751, 916
DraIII CACNNNGTG 1 cut(s) 1437
Eam1104I CTCTTC 6 cut(s) 294, 399, 789, 837, 980, 1177
EarI CTCTTC 6 cut(s) 294, 399, 789, 837, 980, 1177
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 566, 1117
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 149, 786
Eco47III AGCGCT 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 4 cut(s) 67, 423, 692, 861
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 1265
EcoO109I RGGNCCY 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 1385
EcoT14I CCWWGG 2 cut(s) 566, 1117
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 566, 1117
FaeI CATG 9 cut(s) 511, 539, 605, 646, 832, 851, 899, 1121, 1350
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FatI CATG 9 cut(s) 507, 535, 601, 642, 828, 847, 895, 1117, 1346
FauI CCCGC 1 cut(s) 1284
FblI GTMKAC 1 cut(s) 1343
Fnu4HI GCNGC 2 cut(s) 729, 813
FokI GGATG 3 cut(s) 986, 1250, 1259
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 729, 813
FspBI CTAG 2 cut(s) 167, 551
GlaI GCGC 4 cut(s) 364, 366, 368, 651
GluI GCNGC 2 cut(s) 729, 813
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 1 cut(s) 485
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 964
HhaI GCGC 4 cut(s) 365, 367, 369, 652
Hin1II CATG 9 cut(s) 511, 539, 605, 646, 832, 851, 899, 1121, 1350
Hin6I GCGC 4 cut(s) 363, 365, 367, 650
HinP1I GCGC 4 cut(s) 363, 365, 367, 650
HincII GTYRAC 3 cut(s) 306, 430, 856
HindII GTYRAC 3 cut(s) 306, 430, 856
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 6 cut(s) 824, 857, 1036, 1045, 1426, 1441
HpaII CCGG 1 cut(s) 497
HphI GGTGA 1 cut(s) 1423
Hpy166II GTNNAC 4 cut(s) 306, 430, 856, 1344
Hpy188I TCNGA 9 cut(s) 86, 149, 331, 403, 459, 756, 1075, 1446, 1461
Hpy188III TCNNGA 8 cut(s) 50, 103, 167, 415, 643, 896, 1040, 1087
Hpy8I GTNNAC 4 cut(s) 306, 430, 856, 1344
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 4 cut(s) 178, 182, 338, 1384
HpyCH4III ACNGT 5 cut(s) 37, 434, 453, 515, 614
HpyCH4IV ACGT 2 cut(s) 96, 1059
HpyCH4V TGCA 7 cut(s) 78, 283, 380, 742, 1100, 1200, 1308
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 75, 207, 364, 1119, 1418
HpyF3I CTNAG 4 cut(s) 321, 328, 479, 653
HpySE526I ACGT 2 cut(s) 96, 1059
Hsp92II CATG 9 cut(s) 511, 539, 605, 646, 832, 851, 899, 1121, 1350
HspAI GCGC 4 cut(s) 363, 365, 367, 650
Kzo9I GATC 5 cut(s) 28, 331, 469, 751, 916
LguI GCTCTTC 2 cut(s) 837, 980
LmnI GCTCC 1 cut(s) 552
Lsp1109I GCAGC 2 cut(s) 715, 824
LweI GCATC 2 cut(s) 87, 709
MaeI CTAG 2 cut(s) 167, 551
MaeII ACGT 2 cut(s) 96, 1059
MaeIII GTNAC 4 cut(s) 316, 464, 1217, 1325
MalI GATC 5 cut(s) 30, 333, 471, 753, 918
MauBI CGCGCGCG 1 cut(s) 363
MboI GATC 5 cut(s) 28, 331, 469, 751, 916
MboII GAAGA 9 cut(s) 73, 193, 311, 416, 806, 854, 997, 1164, 1193
MfeI CAATTG 2 cut(s) 715, 1101
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 102, 327
MlyI GAGTC 3 cut(s) 851, 1420, 1450
MmeI TCCRAC 3 cut(s) 253, 858, 1042
MnlI CCTC 9 cut(s) 170, 191, 409, 638, 1006, 1103, 1175, 1228, 1463
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 3 cut(s) 782, 963, 1464
MslI CAYNNNNRTG 2 cut(s) 18, 416
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 497, 1387
MunI CAATTG 2 cut(s) 715, 1101
Mva1269I GAATGC 1 cut(s) 1324
MvaI CCWGG 1 cut(s) 1387
MvnI CGCG 4 cut(s) 363, 365, 367, 1436
MwoI GCNNNNNNNGC 6 cut(s) 66, 75, 207, 364, 1119, 1418
NciI CCSGG 1 cut(s) 497
NcoI CCATGG 1 cut(s) 1117
NdeII GATC 5 cut(s) 28, 331, 469, 751, 916
NlaIII CATG 9 cut(s) 511, 539, 605, 646, 832, 851, 899, 1121, 1350
NlaIV GGNNCC 1 cut(s) 1091
NmuCI GTSAC 1 cut(s) 464
PagI TCATGA 2 cut(s) 642, 895
PauI GCGCGC 2 cut(s) 363, 365
PciSI GCTCTTC 2 cut(s) 837, 980
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 57
PctI GAATGC 1 cut(s) 1324
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 3 cut(s) 824, 1036, 1045
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 2 cut(s) 730, 814
PleI GAGTC 3 cut(s) 851, 1420, 1449
PpsI GAGTC 3 cut(s) 851, 1420, 1449
PsiI TTATAA 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 1385
PspGI CCWGG 1 cut(s) 1385
PspN4I GGNNCC 1 cut(s) 1091
PspPI GGNCC 3 cut(s) 149, 483, 786
PsuI RGATCY 1 cut(s) 916
PteI GCGCGC 2 cut(s) 363, 365
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 934, 1025
RsaNI GTAC 2 cut(s) 933, 1024
RseI CAYNNNNRTG 2 cut(s) 18, 416
SacI GAGCTC 1 cut(s) 327
SapI GCTCTTC 2 cut(s) 837, 980
SaqAI TTAA 3 cut(s) 782, 963, 1464
SatI GCNGC 2 cut(s) 729, 813
Sau3AI GATC 5 cut(s) 28, 331, 469, 751, 916
Sau96I GGNCC 3 cut(s) 149, 483, 786
SchI GAGTC 3 cut(s) 851, 1420, 1450
ScrFI CCNGG 2 cut(s) 497, 1387
SduI GDGCHC 2 cut(s) 102, 327
SfaNI GCATC 2 cut(s) 87, 709
SinI GGWCC 2 cut(s) 149, 786
SmiMI CAYNNNNRTG 2 cut(s) 18, 416
SmlI CTYRAG 2 cut(s) 1040, 1361
SmoI CTYRAG 2 cut(s) 1040, 1361
SsiI CCGC 7 cut(s) 6, 706, 803, 936, 1052, 1277, 1434
SspI AATATT 1 cut(s) 224
SspMI CTAG 2 cut(s) 167, 551
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 495, 1385
StyI CCWWGG 2 cut(s) 566, 1117
TaaI ACNGT 5 cut(s) 37, 434, 453, 515, 614
TaiI ACGT 2 cut(s) 99, 1062
TaqI TCGA 3 cut(s) 42, 51, 978
TfiI GAWTC 3 cut(s) 824, 1036, 1045
Tru1I TTAA 3 cut(s) 782, 963, 1464
Tru9I TTAA 3 cut(s) 782, 963, 1464
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 2 cut(s) 728, 812
Tsp45I GTSAC 1 cut(s) 464
TspRI CASTG 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 149, 786
XagI CCTNNNNNAGG 1 cut(s) 1265
XapI RAATTY 3 cut(s) 267, 927, 965
XbaI TCTAGA 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 1343
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 2 cut(s) 167, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.