Rh4DG106200

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009458
Physical Location & Seq
Reverse (-)
16354100 .. 16360580
6481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG106200.1

Sequence Viewer

Length: 846 bp
ATGGAATCCACGTATAGGGCATGGGCTCGAGAGAGGAGAGAAAGCGTAGCACCGGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCCTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTACAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCGCCAAAAATGATCATGTAGAACTTGGACCTTCTGTTAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGATGTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAAAGGGTGTTAAAGCTACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAACGGGAAAGAAATGCCAGGAACTAGGGATGATATCATTGATCATGCTGATAGAACAACTAATACAAGGAAAACATGGGGCTCACCAAATTGTGAATTGAGGATTATCGTAGCTGATGAAGCTGAGCAGAGAACACAGGTAATGCCAAGCTTAGAGGATACACCCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGGTCAGTGTTTTTGACTTATTTGAAAGAGTTTTTCTATTGGAACCTCCAAATTTACTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

281

Amino Acids

31.89

Weight (kDa)

5.32

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 1 - 77 2.9e-14 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 506, 519
AcsI RAATTY 4 cut(s) 216, 517, 743, 832
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 209, 230, 778, 806
AjnI CCWGG 2 cut(s) 550, 780
AlwI GGATC 2 cut(s) 506, 519
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 82, 317, 446
ApoI RAATTY 4 cut(s) 216, 517, 743, 832
AseI ATTAAT 1 cut(s) 501
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 380, 529, 711
AsuHPI GGTGA 2 cut(s) 173, 609
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 3 cut(s) 380, 529, 711
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 28, 617
BbvI GCAGC 3 cut(s) 69, 304, 433
BciT130I CCWGG 2 cut(s) 552, 782
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 3 cut(s) 166, 364, 574
BfaI CTAG 3 cut(s) 180, 290, 558
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 3 cut(s) 83, 318, 447
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 3 cut(s) 84, 319, 448
Bme1390I CCNGG 2 cut(s) 552, 782
Bme18I GGWCC 3 cut(s) 380, 529, 711
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 380, 529, 711
BmiI GGNNCC 3 cut(s) 513, 712, 825
BmrFI CCNGG 2 cut(s) 552, 782
BmsI GCATC 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseBI CCWGG 2 cut(s) 552, 782
BseGI GGATG 4 cut(s) 70, 245, 335, 568
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 390, 648
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 69, 304, 433
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 28, 617
Bsp143I GATC 4 cut(s) 166, 364, 511, 574
Bsp1720I GCTNAGC 1 cut(s) 657
BspCNI CTCAG 2 cut(s) 391, 649
BspLI GGNNCC 3 cut(s) 513, 712, 825
BspPI GGATC 2 cut(s) 506, 519
BssMI GATC 4 cut(s) 166, 364, 511, 574
Bst2UI CCWGG 2 cut(s) 552, 782
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 4 cut(s) 313, 399, 657, 685
BstF5I GGATG 4 cut(s) 70, 245, 335, 568
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 4 cut(s) 169, 367, 514, 577
BstMBI GATC 4 cut(s) 166, 364, 511, 574
BstMWI GCNNNNNNNGC 3 cut(s) 242, 653, 761
BstNI CCWGG 2 cut(s) 552, 782
BstSCI CCNGG 2 cut(s) 550, 780
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 69, 304, 433
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuI GTATCC 1 cut(s) 685
BtsCI GGATG 4 cut(s) 70, 245, 335, 568
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 99, 259, 793
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 380, 529, 711
CsiI ACCWGGT 1 cut(s) 780
Csp6I GTAC 1 cut(s) 284
CviAII CATG 6 cut(s) 21, 224, 368, 526, 578, 609
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 4 cut(s) 313, 399, 657, 685
DpnI GATC 4 cut(s) 168, 366, 513, 576
DpnII GATC 4 cut(s) 166, 364, 511, 574
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 28, 617
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 3 cut(s) 380, 529, 711
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 550, 780
EcoRV GATATC 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 28, 617
FaeI CATG 6 cut(s) 24, 227, 371, 529, 581, 612
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 346
FatI CATG 6 cut(s) 20, 223, 367, 525, 577, 608
FbaI TGATCA 3 cut(s) 166, 364, 574
Fnu4HI GCNGC 3 cut(s) 83, 318, 447
FokI GGATG 4 cut(s) 77, 232, 322, 575
FriOI GRGCYC 2 cut(s) 28, 617
Fsp4HI GCNGC 3 cut(s) 83, 318, 447
FspBI CTAG 3 cut(s) 180, 290, 558
GlaI GCGC 1 cut(s) 355
GluI GCNGC 3 cut(s) 83, 318, 447
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 356
Hin1II CATG 6 cut(s) 24, 227, 371, 529, 581, 612
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 173, 609
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 400, 469, 516
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 4 cut(s) 124, 254, 259, 393
HpyCH4IV ACGT 2 cut(s) 11, 157
HpyCH4V TGCA 5 cut(s) 85, 245, 257, 320, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 653, 761
HpyF3I CTNAG 4 cut(s) 313, 399, 657, 685
HpySE526I ACGT 2 cut(s) 11, 157
Hsp92II CATG 6 cut(s) 24, 227, 371, 529, 581, 612
HspAI GCGC 1 cut(s) 354
Ksp22I TGATCA 3 cut(s) 166, 364, 574
Kzo9I GATC 4 cut(s) 166, 364, 511, 574
LmnI GCTCC 2 cut(s) 79, 761
Lsp1109I GCAGC 3 cut(s) 69, 304, 433
LweI GCATC 1 cut(s) 254
MabI ACCWGGT 1 cut(s) 780
MaeI CTAG 3 cut(s) 180, 290, 558
MaeII ACGT 2 cut(s) 11, 157
MalI GATC 4 cut(s) 168, 366, 513, 576
MboI GATC 4 cut(s) 166, 364, 511, 574
MboII GAAGA 5 cut(s) 68, 131, 308, 311, 429
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 28, 617
MluCI AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 832
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 27, 394, 627, 682, 837
MseI TTAA 7 cut(s) 239, 390, 435, 486, 501, 507, 768
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 552, 782
MvaI CCWGG 2 cut(s) 552, 782
MwoI GCNNNNNNNGC 3 cut(s) 242, 653, 761
NdeII GATC 4 cut(s) 166, 364, 511, 574
NlaIII CATG 6 cut(s) 24, 227, 371, 529, 581, 612
NlaIV GGNNCC 3 cut(s) 513, 712, 825
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 84, 319, 448
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 550, 780
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 2 cut(s) 550, 780
PspN4I GGNNCC 3 cut(s) 513, 712, 825
PspPI GGNCC 3 cut(s) 380, 529, 711
PsrI GAACNNNNNNTAC 2 cut(s) 580, 612
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 7 cut(s) 239, 390, 435, 486, 501, 507, 768
SatI GCNGC 3 cut(s) 83, 318, 447
Sau3AI GATC 4 cut(s) 166, 364, 511, 574
Sau96I GGNCC 3 cut(s) 380, 529, 711
ScrFI CCNGG 2 cut(s) 552, 782
SduI GDGCHC 2 cut(s) 28, 617
SexAI ACCWGGT 1 cut(s) 780
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 3 cut(s) 380, 529, 711
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 832
SspI AATATT 1 cut(s) 505
SspMI CTAG 3 cut(s) 180, 290, 558
StyD4I CCNGG 2 cut(s) 550, 780
TaiI ACGT 2 cut(s) 14, 160
TaqI TCGA 1 cut(s) 28
TasI AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 832
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 7 cut(s) 239, 390, 435, 486, 501, 507, 768
Tru9I TTAA 7 cut(s) 239, 390, 435, 486, 501, 507, 768
TscAI CASTG 3 cut(s) 106, 259, 793
TseI GCWGC 3 cut(s) 82, 317, 446
TspDTI ATGAA 5 cut(s) 81, 309, 486, 666, 737
TspRI CASTG 3 cut(s) 106, 259, 793
VpaK11BI GGWCC 3 cut(s) 380, 529, 711
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 4 cut(s) 216, 517, 743, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 3 cut(s) 180, 290, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.