Rh4BG106400

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009458
Physical Location & Seq
Reverse (-)
18220478 .. 18225845
5368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG106400.1

Sequence Viewer

Length: 933 bp
ATGGAATCCACGTATAGGGCATGGGCTCGAGAGAGGAGAGAAAGTGTAGCACCGGAAGATTTGGATGAACTCTGTAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCGTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTACAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCACCAAAAATGATCATGTAGAACTTGGACCTTCTGTGAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGATGTGGACATTAAATCTAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAAAGGGTGTTAAAGATACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAATGGGAAAGAAATGCCAGGAACTAGGGATGATATCATTTATCATGCTGATAGAACAACTAATACAAGGAAAACTTGGGGCTCACCAAATTGTGAATTGAGGATTATTGTAGCTGATGAAGCTGAGCAGAGAACACAGGTAATGCCAAGCTTAGAGGATACACCCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCAGGGTTGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCCATTACGCTTGCATTACGGTCGTTCTGTTCAAGTAACCCTCGTTTTAATGCTCACTTTTTTCCTGCTTGGTAAGCTGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

310

Amino Acids

35.26

Weight (kDa)

6.53

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 1 - 77 3.5e-14 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 506, 519
AcsI RAATTY 3 cut(s) 216, 517, 743
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 209, 230, 778, 878
AjnI CCWGG 1 cut(s) 550
AlwI GGATC 2 cut(s) 506, 519
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 82, 317, 446
ApoI RAATTY 3 cut(s) 216, 517, 743
AseI ATTAAT 1 cut(s) 501
AspS9I GGNCC 4 cut(s) 380, 529, 711, 845
AsuHPI GGTGA 2 cut(s) 173, 609
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 4 cut(s) 380, 529, 711, 845
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 28, 617
BbvI GCAGC 3 cut(s) 69, 304, 433
BccI CCATC 1 cut(s) 831
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 2 cut(s) 166, 364
BfaI CTAG 3 cut(s) 180, 290, 558
BfmI CTRYAG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 3 cut(s) 83, 318, 447
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 3 cut(s) 84, 319, 448
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 4 cut(s) 380, 529, 711, 845
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 4 cut(s) 380, 529, 711, 845
BmiI GGNNCC 2 cut(s) 513, 712
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 254, 812
Bpu1102I GCTNAGC 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 721, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 70, 335, 568
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 390, 648
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 69, 304, 433
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 868
BsiEI CGRYCG 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 28, 617
Bsp143I GATC 3 cut(s) 166, 364, 511
Bsp1720I GCTNAGC 1 cut(s) 657
BspCNI CTCAG 2 cut(s) 391, 649
BspLI GGNNCC 2 cut(s) 513, 712
BspPI GGATC 2 cut(s) 506, 519
BssMI GATC 3 cut(s) 166, 364, 511
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 451, 857
BstDEI CTNAG 4 cut(s) 313, 399, 657, 685
BstF5I GGATG 3 cut(s) 70, 335, 568
BstKTI GATC 3 cut(s) 169, 367, 514
BstMBI GATC 3 cut(s) 166, 364, 511
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 4 cut(s) 242, 653, 761, 919
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 69, 304, 433
BstX2I RGATCY 1 cut(s) 511
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 1 cut(s) 511
BsuI GTATCC 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 3 cut(s) 70, 335, 568
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 259
Cac8I GCNNGC 2 cut(s) 451, 857
Cfr13I GGNCC 4 cut(s) 380, 529, 711, 845
Csp6I GTAC 1 cut(s) 284
CviAII CATG 5 cut(s) 21, 224, 368, 526, 578
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 4 cut(s) 313, 399, 657, 685
DpnI GATC 3 cut(s) 168, 366, 513
DpnII GATC 3 cut(s) 166, 364, 511
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 28, 617
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 4 cut(s) 380, 529, 711, 845
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 550
EcoRV GATATC 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 28, 617
FaeI CATG 5 cut(s) 24, 227, 371, 529, 581
FaiI YATR 9 cut(s) 15, 22, 171, 186, 225, 369, 413, 527, 579
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 592, 624
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 20, 223, 367, 525, 577
FbaI TGATCA 2 cut(s) 166, 364
Fnu4HI GCNGC 3 cut(s) 83, 318, 447
FokI GGATG 3 cut(s) 77, 322, 575
FriOI GRGCYC 2 cut(s) 28, 617
Fsp4HI GCNGC 3 cut(s) 83, 318, 447
FspBI CTAG 3 cut(s) 180, 290, 558
GluI GCNGC 3 cut(s) 83, 318, 447
GsaI CCCAGC 1 cut(s) 283
HapII CCGG 1 cut(s) 53
Hin1II CATG 5 cut(s) 24, 227, 371, 529, 581
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 173, 609
Hpy166II GTNNAC 2 cut(s) 430, 827
Hpy188I TCNGA 3 cut(s) 400, 469, 516
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 430, 827
HpyAV CCTTC 3 cut(s) 124, 254, 393
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 2 cut(s) 11, 157
HpyCH4V TGCA 7 cut(s) 85, 245, 257, 320, 453, 803, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 653, 761, 919
HpyF3I CTNAG 4 cut(s) 313, 399, 657, 685
HpySE526I ACGT 2 cut(s) 11, 157
Hsp92II CATG 5 cut(s) 24, 227, 371, 529, 581
Ksp22I TGATCA 2 cut(s) 166, 364
Kzo9I GATC 3 cut(s) 166, 364, 511
LmnI GCTCC 2 cut(s) 79, 761
Lsp1109I GCAGC 3 cut(s) 69, 304, 433
LweI GCATC 2 cut(s) 254, 812
MaeI CTAG 3 cut(s) 180, 290, 558
MaeII ACGT 2 cut(s) 11, 157
MaeIII GTNAC 1 cut(s) 880
MalI GATC 3 cut(s) 168, 366, 513
MboI GATC 3 cut(s) 166, 364, 511
MboII GAAGA 5 cut(s) 68, 131, 308, 311, 429
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 28, 617
MluCI AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 927
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 27, 394, 627, 682, 896
MseI TTAA 8 cut(s) 239, 435, 486, 501, 507, 768, 893, 926
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 4 cut(s) 242, 653, 761, 919
NdeII GATC 3 cut(s) 166, 364, 511
NlaIII CATG 5 cut(s) 24, 227, 371, 529, 581
NlaIV GGNNCC 2 cut(s) 513, 712
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 84, 319, 448
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 513, 712
PspPI GGNCC 4 cut(s) 380, 529, 711, 845
PsrI GAACNNNNNNTAC 2 cut(s) 580, 612
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 8 cut(s) 239, 435, 486, 501, 507, 768, 893, 926
SatI GCNGC 3 cut(s) 83, 318, 447
Sau3AI GATC 3 cut(s) 166, 364, 511
Sau96I GGNCC 4 cut(s) 380, 529, 711, 845
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 2 cut(s) 28, 617
SfaNI GCATC 2 cut(s) 254, 812
SfcI CTRYAG 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 4 cut(s) 380, 529, 711, 845
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 927
SspI AATATT 1 cut(s) 505
SspMI CTAG 3 cut(s) 180, 290, 558
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 2 cut(s) 14, 160
TaqI TCGA 1 cut(s) 28
TasI AATT 9 cut(s) 191, 216, 454, 517, 622, 629, 743, 769, 927
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 8 cut(s) 239, 435, 486, 501, 507, 768, 893, 926
Tru9I TTAA 8 cut(s) 239, 435, 486, 501, 507, 768, 893, 926
TscAI CASTG 2 cut(s) 106, 259
TseI GCWGC 3 cut(s) 82, 317, 446
TspDTI ATGAA 5 cut(s) 81, 309, 486, 666, 737
TspRI CASTG 2 cut(s) 106, 259
VpaK11BI GGWCC 4 cut(s) 380, 529, 711, 845
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 3 cut(s) 216, 517, 743
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 834
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 3 cut(s) 180, 290, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.