Rh4AG114200

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009458
Physical Location & Seq
Reverse (-)
24673739 .. 24679286
5548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG114200.1

Sequence Viewer

Length: 927 bp
ATGGAATCCACGTATAGGGCATGGGCTCGAGAGAGGAGAGAAAGTGTAGCACCGGAAGATTTGGATGAACTCTGCAGGGAGCTGCAAACAGCTTTAGGCACTGCCAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGTTGAGCTATCGCCAACGTGGTGATGATCATACAACAGCTAGACATAGACAATTTATTTCTGCCATTGAAAACCAAATTTCCCATGTTGAAACAGCATTAAGTGCATCGTTCAGTGCAGAAGGAAAGAAACACTTACGCTGGGTACAGCTAGATGAAGAAGAATGTGATGACTTAGCTGCATTTCTCTCTGGGACATCCCATTGTATTCCAAGCGCCAAAAATGATCATGTAGAACTTGGATCTTCTGTGAAAAGCTCTGAGGAAAAGCCTATGAGAAGAAAAGATGTAGATTTAAATGCTGCCTGCAATTTGGACATTTCTGATGAAATAAAGGGTGTTAAAGATACTGCTATTAATATTAAGGATCCGAATTTTATCATGGACCTAAATGGGAAAGAAATGCCAGGAACTAGGGATGATATCATTTATCATGCTGATAGAACAACTAATACAAGGAAAACTTGGGGCTCACCAAATTGTGAATTGAGGATTATCGTAGCTGATGAAGCTGAGCAGAGAACACAGGTAATGCCAAGCTTAGAGGATACACCCAAAGAAAAAGGGTCCAAACTTGTCTTTTGGAGAAGTTGTGGAGAATTTCATCAAGCAAAGGGAGCAGTTAATTTGTTCAACCAGCTGTTTGGCAGGGTTGGTGCATCTCAAAAGCAATCACAAAGTCCACAGAAGCGATGGCAAGGTCCATTACGCTTGCATTACGGTCGTTCTGTTCAAGTAACCCTCGTTTTAATGCTCACTTTTTTCCTGCTTGGTAAGCTGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

308

Amino Acids

35.0

Weight (kDa)

6.34

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 1 - 77 3.5e-14 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 388, 500, 513
AcsI RAATTY 3 cut(s) 216, 511, 737
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 209, 230, 772, 872
AjnI CCWGG 1 cut(s) 544
AlwI GGATC 3 cut(s) 388, 500, 513
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 82, 317, 440
ApoI RAATTY 3 cut(s) 216, 511, 737
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 523, 705, 839
AsuHPI GGTGA 2 cut(s) 173, 603
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 3 cut(s) 523, 705, 839
BamHI GGATCC 1 cut(s) 505
BanII GRGCYC 2 cut(s) 28, 611
BbvI GCAGC 3 cut(s) 69, 304, 427
BccI CCATC 1 cut(s) 825
BcgI CGANNNNNNTGC 2 cut(s) 842, 876
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 679
BclI TGATCA 2 cut(s) 166, 364
BfaI CTAG 3 cut(s) 180, 290, 552
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 3 cut(s) 83, 318, 441
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 3 cut(s) 84, 319, 442
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 3 cut(s) 523, 705, 839
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 523, 705, 839
BmiI GGNNCC 2 cut(s) 507, 706
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 254, 806
Bpu1102I GCTNAGC 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 715, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 546
BseGI GGATG 3 cut(s) 70, 335, 562
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 390, 642
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 69, 304, 427
BseYI CCCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 862
BsiEI CGRYCG 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 28, 611
Bsp143I GATC 4 cut(s) 166, 364, 380, 505
Bsp1720I GCTNAGC 1 cut(s) 651
BspCNI CTCAG 2 cut(s) 391, 643
BspLI GGNNCC 2 cut(s) 507, 706
BspMAI CTGCAG 1 cut(s) 77
BspPI GGATC 3 cut(s) 388, 500, 513
BssMI GATC 4 cut(s) 166, 364, 380, 505
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 860
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 445, 851
BstDEI CTNAG 4 cut(s) 313, 399, 651, 679
BstF5I GGATG 3 cut(s) 70, 335, 562
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 4 cut(s) 169, 367, 383, 508
BstMBI GATC 4 cut(s) 166, 364, 380, 505
BstMCI CGRYCG 1 cut(s) 862
BstMWI GCNNNNNNNGC 4 cut(s) 242, 647, 755, 913
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 69, 304, 427
BstX2I RGATCY 2 cut(s) 380, 505
BstXI CCANNNNNNTGG 1 cut(s) 782
BstYI RGATCY 2 cut(s) 380, 505
BsuI GTATCC 1 cut(s) 679
BtgZI GCGATG 1 cut(s) 844
BtsCI GGATG 3 cut(s) 70, 335, 562
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 259
Cac8I GCNNGC 2 cut(s) 445, 851
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 523, 705, 839
Csp6I GTAC 1 cut(s) 284
CviAII CATG 5 cut(s) 21, 224, 368, 520, 572
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 4 cut(s) 313, 399, 651, 679
DpnI GATC 4 cut(s) 168, 366, 382, 507
DpnII GATC 4 cut(s) 166, 364, 380, 505
DraI TTTAAA 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 28, 611
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 3 cut(s) 523, 705, 839
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 544
EcoRV GATATC 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 28, 611
FaeI CATG 5 cut(s) 24, 227, 371, 523, 575
FaiI YATR 9 cut(s) 15, 22, 171, 186, 225, 369, 413, 521, 573
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 586, 618
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 20, 223, 367, 519, 571
FbaI TGATCA 2 cut(s) 166, 364
Fnu4HI GCNGC 3 cut(s) 83, 318, 441
FokI GGATG 3 cut(s) 77, 322, 569
FriOI GRGCYC 2 cut(s) 28, 611
Fsp4HI GCNGC 3 cut(s) 83, 318, 441
FspBI CTAG 3 cut(s) 180, 290, 552
GlaI GCGC 1 cut(s) 355
GluI GCNGC 3 cut(s) 83, 318, 441
GsaI CCCAGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 356
Hin1II CATG 5 cut(s) 24, 227, 371, 523, 575
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 173, 603
Hpy166II GTNNAC 1 cut(s) 821
Hpy188I TCNGA 3 cut(s) 400, 463, 510
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 821
HpyAV CCTTC 2 cut(s) 124, 254
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 2 cut(s) 11, 157
HpyCH4V TGCA 8 cut(s) 75, 85, 245, 257, 320, 447, 797, 853
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 647, 755, 913
HpyF3I CTNAG 4 cut(s) 313, 399, 651, 679
HpySE526I ACGT 2 cut(s) 11, 157
Hsp92II CATG 5 cut(s) 24, 227, 371, 523, 575
HspAI GCGC 1 cut(s) 354
Ksp22I TGATCA 2 cut(s) 166, 364
Kzo9I GATC 4 cut(s) 166, 364, 380, 505
LmnI GCTCC 2 cut(s) 79, 755
Lsp1109I GCAGC 3 cut(s) 69, 304, 427
LweI GCATC 2 cut(s) 254, 806
MaeI CTAG 3 cut(s) 180, 290, 552
MaeII ACGT 2 cut(s) 11, 157
MaeIII GTNAC 1 cut(s) 874
MalI GATC 4 cut(s) 168, 366, 382, 507
MboI GATC 4 cut(s) 166, 364, 380, 505
MboII GAAGA 6 cut(s) 68, 131, 308, 311, 375, 429
MflI RGATCY 2 cut(s) 380, 505
MhlI GDGCHC 2 cut(s) 28, 611
MluCI AATT 9 cut(s) 191, 216, 448, 511, 616, 623, 737, 763, 921
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 27, 394, 621, 676, 890
MseI TTAA 8 cut(s) 239, 434, 480, 495, 501, 762, 887, 920
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 242, 647, 755, 913
NdeII GATC 4 cut(s) 166, 364, 380, 505
NlaIII CATG 5 cut(s) 24, 227, 371, 523, 575
NlaIV GGNNCC 2 cut(s) 507, 706
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 84, 319, 442
Ppu21I YACGTR 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 279
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 507, 706
PspPI GGNCC 3 cut(s) 523, 705, 839
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 380, 505
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 8 cut(s) 239, 434, 480, 495, 501, 762, 887, 920
SatI GCNGC 3 cut(s) 83, 318, 441
Sau3AI GATC 4 cut(s) 166, 364, 380, 505
Sau96I GGNCC 3 cut(s) 523, 705, 839
ScrFI CCNGG 1 cut(s) 546
SduI GDGCHC 2 cut(s) 28, 611
SfaNI GCATC 2 cut(s) 254, 806
SfcI CTRYAG 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 3 cut(s) 523, 705, 839
SlaI CTCGAG 1 cut(s) 27
SmiI ATTTAAAT 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 9 cut(s) 191, 216, 448, 511, 616, 623, 737, 763, 921
SspI AATATT 1 cut(s) 499
SspMI CTAG 3 cut(s) 180, 290, 552
StyD4I CCNGG 1 cut(s) 544
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 2 cut(s) 14, 160
TaqI TCGA 1 cut(s) 28
TasI AATT 9 cut(s) 191, 216, 448, 511, 616, 623, 737, 763, 921
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 8 cut(s) 239, 434, 480, 495, 501, 762, 887, 920
Tru9I TTAA 8 cut(s) 239, 434, 480, 495, 501, 762, 887, 920
TscAI CASTG 2 cut(s) 106, 259
TseI GCWGC 3 cut(s) 82, 317, 440
TspDTI ATGAA 5 cut(s) 81, 309, 480, 660, 731
TspRI CASTG 2 cut(s) 106, 259
VpaK11BI GGWCC 3 cut(s) 523, 705, 839
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 3 cut(s) 216, 511, 737
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 828
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 3 cut(s) 180, 290, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.