Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012493

Physical Location & Seq

Genomic Coordinates Forward (+)

8415046 .. 8417994

Gene Structure 2949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTACGGAGACGCTACAAACTGGAATGAAGATGAGTATAGAGAATCAATTTTGAAGGAGCGAGAGATAGAGACACGCACCGTCTTCAGAACCGCCTGGGCTCCTCCGGCGAGAATCTCTAATCCAGACGCATTTGTTGTAGCCTCCAGCGATGGAACTTTAGCTTTCCATTCACTGAACTCGCTTGTGTCTCAATCGGCGAGTTTTGGCTACTCGAAAGGTCAAGATGTTATGGTGGCTGAACCTGAGAGAGTGGTTAGGGCACACGAAGGTCCTGCTTATGATGTTAAGTTCTATGGTGAAGACGAAGATGCTTTGCTACTTAGTTGTGGTGATGATGGTAGAGTTAGGGGATGGAAATGGAGAGAATTTGCTGAATCAGATGTGTCTCTTCATTTGAAAGAGAATCATCTGAAGCCATTGCTTGAACTGATTAATCCACAACACAAAGGTCCTTGGGGTGCGCTTTCACCGATGCCTGAGATCAATGCCATGTCTGTTGATCCTCAGTCAGGAAGTGTATTTACAGCAGCTGGTGATTCTTGCGCATATTGTTGGGACGTGGAGAGTGGTAAGATTAAAATGACCTTTAAAGGTCATTCAGACTATTTGCATACTGTAGTTTCTCGTAGTTCTGCAAGTCAGATATTGACGGGTTCAGAGGATGGGACTGCGAGAATCTGGGATTGCAAAACGGGAAAATGTGTTAAAGTAATTGGTTCCCAGGATAAAAAGTCCCGCCTTCGCGTTAGTTCTATGGCCCTTGATGGGAGTGAAAGCTGGTTGGTTTGTGGACAGGGCAAAAATTTAGCTTTATGGAATCTTCCCGCCTCAGAATGCGTACAAACAATACCCATCCCTGCACATGTACAGGATGTGATGTTTGATGAAAAGCAAATTTTGACTGTAGGAGCAGAACCACTTCTAAGACGTTTCGACTTAAATGGAGCTTTGCTTTCTCAAATTCACTGTGCTCCTTGTTCAGTATTTTCCATTTCCTTGCATCCAGCAGGAGTAGTTGCTGTGGGAGGTTATGGAGGTATTGTTGATGTCATCTCTCAATTTGGAAGCCATCTCTGCACATTTCGTAGCAGTTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016567 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0032446 GO:0032991 GO:0034641 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070647 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

367

Amino Acids

40.07

Weight (kDa)

5.48

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	103 - 240	3.7e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	159 - 284	1.4e-15	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	161 - 274	1e-13	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	162 - 241	1.5e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	164 - 283	2e-15	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	169 - 350	3.4e-14	THOC3 beta-propeller domain
WDR55	PF24796	172 - 278	9.7e-09	WDR55
WD40_Gbeta	PF25391	173 - 238	1.2e-06	G protein beta WD-40 repeat protein
EIF3I	PF24805	174 - 244	1.4e-08	EIF3I
WD40_CDC20-Fz	PF24807	174 - 279	2.6e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR41	PF25178	175 - 275	9.6e-09	WDR41
WD40	PF00400	192 - 229	5.4e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19430
fragaria_vesca	FvH4_1g07921
malus_domestica	MD02G1082800.v1.1 MD15G1210900.v1.1
prunus_persica	Prupe.7G205900_v2.0.a1 Prupe.7G205900_v2.0.a1
pyrus_communis	pycom02g06570 pycom15g18680
rosa_chinensis	RchiOBHm_Chr2g0093801
rosa_multiflora	Rmu_co8487551.1_g000001 Rmu_sc0017523.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147790
rosa_rugosa	Rorug05G0508300
rosa_samantha	Rh2AG086400 Rh2BG086700 Rh2CG089100 Rh2DG084900
rosa_wichuraiana	Rw5G017310 Rw6G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	547
AccII	CGCG	1 cut(s)	747
AciI	CCGC	3 cut(s)	93, 739, 828
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	4 cut(s)	368, 805, 897, 963
AcuI	CTGAAG	2 cut(s)	70, 434
AfaI	GTAC	3 cut(s)	5, 843, 870
AfiI	CCNNNNNNNGG	2 cut(s)	512, 768
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	3 cut(s)	55, 400, 428
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	95, 723
AluBI	AGCT	5 cut(s)	164, 533, 780, 812, 950
AluI	AGCT	5 cut(s)	164, 533, 780, 812, 950
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	4 cut(s)	3, 65, 195, 393
AlwI	GGATC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	4 cut(s)	368, 805, 897, 963
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	921
AspLEI	GCGC	2 cut(s)	466, 548
AspS9I	GGNCC	3 cut(s)	272, 452, 760
AsuHPI	GGTGA	4 cut(s)	311, 344, 462, 548
AvaII	GGWCC	2 cut(s)	272, 452
BaeGI	GKGCMC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
BbsI	GAAGAC	2 cut(s)	76, 309
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	7 cut(s)	146, 332, 348, 659, 761, 863, 1080
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	97, 725
BcoDI	GTCTC	4 cut(s)	3, 65, 195, 393
BfmI	CTRYAG	2 cut(s)	618, 906
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	97, 725
Bme18I	GGWCC	2 cut(s)	272, 452
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	272, 452, 760
BmiI	GGNNCC	2 cut(s)	102, 721
BmrFI	CCNGG	2 cut(s)	97, 725
BmsI	GCATC	3 cut(s)	301, 465, 1012
BpiI	GAAGAC	2 cut(s)	76, 309
BpmI	CTGGAG	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	96, 455, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	1029, 1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 768
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	419
BseBI	CCWGG	2 cut(s)	97, 725
BseDI	CCNNGG	3 cut(s)	96, 455, 723
BseGI	GGATG	5 cut(s)	359, 670, 855, 880, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	512, 768
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	4 cut(s)	237, 471, 521, 846
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	542
BsgI	GTGCAG	2 cut(s)	846, 1063
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	3 cut(s)	572, 682, 721
BslI	CCNNNNNNNGG	2 cut(s)	512, 768
BsmAI	GTCTC	4 cut(s)	3, 65, 195, 393
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	3 cut(s)	572, 682, 721
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	1 cut(s)	761
Bsp1286I	GDGCHC	3 cut(s)	103, 265, 976
Bsp1407I	TGTACA	1 cut(s)	868
Bsp143I	GATC	2 cut(s)	483, 502
BspACI	CCGC	3 cut(s)	93, 739, 828
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	4 cut(s)	238, 472, 520, 845
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	102, 721
BspPI	GGATC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	96, 455, 723
BssMI	GATC	2 cut(s)	483, 502
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	97, 725
Bst4CI	ACNGT	4 cut(s)	82, 619, 907, 971
Bst6I	CTCTTC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	868
BstDEI	CTNAG	6 cut(s)	246, 323, 480, 507, 832, 926
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	5 cut(s)	359, 670, 855, 880, 1003
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	466, 548
BstKTI	GATC	2 cut(s)	486, 505
BstMAI	GTCTC	4 cut(s)	3, 65, 195, 393
BstMBI	GATC	2 cut(s)	483, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 1077
BstNI	CCWGG	2 cut(s)	97, 725
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	2 cut(s)	95, 723
BstSFI	CTRYAG	2 cut(s)	618, 906
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	2 cut(s)	76, 309
BsuRI	GGCC	1 cut(s)	761
BtgZI	GCGATG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	5 cut(s)	359, 670, 855, 880, 1003
BtsIMutI	CAGTG	2 cut(s)	173, 967
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	466, 548
Cfr13I	GGNCC	3 cut(s)	272, 452, 760
CseI	GACGC	2 cut(s)	20, 137
Csp6I	GTAC	3 cut(s)	4, 842, 869
CviAII	CATG	2 cut(s)	493, 866
CviQI	GTAC	3 cut(s)	4, 842, 869
DdeI	CTNAG	6 cut(s)	246, 323, 480, 507, 832, 926
DpnI	GATC	2 cut(s)	485, 504
DpnII	GATC	2 cut(s)	483, 502
DraI	TTTAAA	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	272, 452
Eco57I	CTGAAG	2 cut(s)	70, 434
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	2 cut(s)	272, 452
EcoRII	CCWGG	2 cut(s)	95, 723
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	2 cut(s)	496, 869
FaqI	GGGAC	3 cut(s)	572, 682, 721
FatI	CATG	2 cut(s)	492, 865
FauI	CCCGC	2 cut(s)	746, 835
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	5 cut(s)	366, 677, 842, 887, 990
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	531
FspI	TGCGCA	1 cut(s)	547
GlaI	GCGC	2 cut(s)	465, 547
GluI	GCNGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	2 cut(s)	20, 137
HhaI	GCGC	2 cut(s)	466, 548
Hin1II	CATG	2 cut(s)	496, 869
Hin6I	GCGC	2 cut(s)	464, 546
HinP1I	GCGC	2 cut(s)	464, 546
HinfI	GANTC	7 cut(s)	44, 114, 377, 406, 539, 678, 820
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	4 cut(s)	311, 344, 462, 548
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	7 cut(s)	89, 382, 414, 604, 645, 661, 835
Hpy188III	TCNNGA	3 cut(s)	125, 224, 513
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	3 cut(s)	49, 263, 752
HpyCH4III	ACNGT	4 cut(s)	82, 619, 907, 971
HpyCH4IV	ACGT	2 cut(s)	561, 931
HpyCH4V	TGCA	6 cut(s)	613, 638, 690, 863, 1003, 1080
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 1077
HpyF3I	CTNAG	6 cut(s)	246, 323, 480, 507, 832, 926
HpySE526I	ACGT	2 cut(s)	561, 931
Hsp92II	CATG	2 cut(s)	496, 869
HspAI	GCGC	2 cut(s)	464, 546
Kzo9I	GATC	2 cut(s)	483, 502
LmnI	GCTCC	5 cut(s)	58, 106, 911, 947, 979
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	301, 465, 1012
MaeII	ACGT	2 cut(s)	561, 931
MalI	GATC	2 cut(s)	485, 504
MboI	GATC	2 cut(s)	483, 502
MboII	GAAGA	6 cut(s)	41, 76, 314, 320, 383, 815
MhlI	GDGCHC	3 cut(s)	103, 265, 976
MluCI	AATT	7 cut(s)	48, 368, 714, 805, 897, 963, 1061
MnlI	CCTC	7 cut(s)	114, 154, 516, 655, 841, 1022, 1031
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	6 cut(s)	288, 435, 579, 591, 708, 941
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	97, 725
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	2 cut(s)	97, 725
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	107, 1077
NdeII	GATC	2 cut(s)	483, 502
NlaIII	CATG	2 cut(s)	496, 869
NlaIV	GGNNCC	2 cut(s)	102, 721
NsbI	TGCGCA	1 cut(s)	547
NspI	RCATGY	1 cut(s)	869
PciI	ACATGT	1 cut(s)	865
PctI	GAATGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	7 cut(s)	44, 114, 377, 406, 539, 678, 820
PkrI	GCNGC	1 cut(s)	532
PpuMI	RGGWCCY	2 cut(s)	272, 452
PscI	ACATGT	1 cut(s)	865
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	2 cut(s)	272, 452
Psp6I	CCWGG	2 cut(s)	95, 723
PspGI	CCWGG	2 cut(s)	95, 723
PspN4I	GGNNCC	2 cut(s)	102, 721
PspPI	GGNCC	3 cut(s)	272, 452, 760
PspPPI	RGGWCCY	2 cut(s)	272, 452
PstNI	CAGNNNCTG	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	5, 843, 870
RsaNI	GTAC	3 cut(s)	4, 842, 869
SaqAI	TTAA	6 cut(s)	288, 435, 579, 591, 708, 941
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	2 cut(s)	483, 502
Sau96I	GGNCC	3 cut(s)	272, 452, 760
ScrFI	CCNGG	2 cut(s)	97, 725
SduI	GDGCHC	3 cut(s)	103, 265, 976
SfaNI	GCATC	3 cut(s)	301, 465, 1012
SfcI	CTRYAG	2 cut(s)	618, 906
SinI	GGWCC	2 cut(s)	272, 452
Sse9I	AATT	7 cut(s)	48, 368, 714, 805, 897, 963, 1061
SsiI	CCGC	3 cut(s)	93, 739, 828
StyD4I	CCNGG	2 cut(s)	95, 723
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	4 cut(s)	82, 619, 907, 971
TaiI	ACGT	2 cut(s)	564, 934
TaqI	TCGA	2 cut(s)	215, 936
TasI	AATT	7 cut(s)	48, 368, 714, 805, 897, 963, 1061
TatI	WGTACW	1 cut(s)	868
TfiI	GAWTC	7 cut(s)	44, 114, 377, 406, 539, 678, 820
Tru1I	TTAA	6 cut(s)	288, 435, 579, 591, 708, 941
Tru9I	TTAA	6 cut(s)	288, 435, 579, 591, 708, 941
TscAI	CASTG	2 cut(s)	180, 974
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	4 cut(s)	42, 383, 903, 1086
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	180, 974
VpaK11BI	GGWCC	2 cut(s)	272, 452
VspI	ATTAAT	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	4 cut(s)	368, 805, 897, 963
XceI	RCATGY	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.