Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012493

Physical Location & Seq

Genomic Coordinates Forward (+)

22068409 .. 22078964

Gene Structure 10556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACCGCGACCGAGACGGAGGACGCCGTACGACGTTGCATCGCCATCACCGATTACCGCAAGAGGTTACTCCAACACAAAGACTATGGGGATGATGGTCGAATTCGAGGATGGAGGTGGAAGGATTGCATATGGTTTGACATGCCTATTTATTTGCAAGGAGACCAAGTAAAGCCAGTACTTGACGTGGTGAATCCTCAACGTAAGGGACCTTGGGGGGCTTTACCTCCAATTCCGGAAAACAATGCTCTTGCTGGAGGATCCATTTTCTCTGCTGCTGGTGATTCTTGTGTCTATTTCTGGGACATGATCATAAATGGTTCAGAGGATGGGACGGCACATTGCAGAAGTGGAAAGTCAGTTCAAGTGATTGAGCCATTAAAGAATAATAAATTGAAAGGGTCGTGTGTCAGTTGCATTGGTCTTGATGCAAGTGAAAGCTGGATGGCTTGTGGTAGTGGTCGGAGTTTATCAGTTTGGAACCTTCCTACTTCTGAATCAGTTGGAGCAGAGCCTCTACTTAGCCGTTTTGACATAAATGAGGCGATTCTTTCACAAATGCAATGTTCTCCCCAGTCAACCTTTTTTGTCTCATCACATGCATCTGGGGTAAGAACTTGGCTTGATCTTGCACTTTTACTTAAACAATCTTTGTGCCTGCTCATGTTTCAAAATGTTGGACACTTTCTTTGCACCTTTGAGGACACAGTTTATGTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016567 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0032446 GO:0032991 GO:0034641 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070647 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

5.58

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19430
fragaria_vesca	FvH4_1g07921
malus_domestica	MD02G1082800.v1.1 MD15G1210900.v1.1
prunus_persica	Prupe.7G205900_v2.0.a1 Prupe.7G205900_v2.0.a1
pyrus_communis	pycom02g06570 pycom15g18680
rosa_chinensis	RchiOBHm_Chr2g0093801
rosa_multiflora	Rmu_co8487551.1_g000001 Rmu_sc0017523.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147790
rosa_rugosa	Rorug05G0508300
rosa_samantha	Rh2AG086400 Rh2BG086700 Rh2CG089100 Rh2DG084900
rosa_wichuraiana	Rw5G017310 Rw6G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	2 cut(s)	6, 58
AclWI	GGATC	2 cut(s)	255, 268
AcsI	RAATTY	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	30, 180
AgsI	TTSAA	3 cut(s)	365, 397, 671
AjiI	CACGTC	1 cut(s)	187
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	1 cut(s)	441
AluI	AGCT	1 cut(s)	441
Alw26I	GTCTC	3 cut(s)	8, 156, 595
AlwI	GGATC	2 cut(s)	255, 268
Aor13HI	TCCGGA	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	102
ArsI	GACNNNNNNTTYG	2 cut(s)	672, 704
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	40, 202, 293
AvaII	GGWCC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	5 cut(s)	53, 89, 105, 323, 439
BceAI	ACGGC	3 cut(s)	11, 351, 510
BclI	TGATCA	1 cut(s)	309
BcoDI	GTCTC	3 cut(s)	8, 156, 595
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	210, 262, 482
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	3 cut(s)	48, 418, 611
BmuI	ACTGGG	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bse1I	ACTGG	2 cut(s)	176, 574
Bse3DI	GCAATG	2 cut(s)	340, 569
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	4 cut(s)	97, 116, 334, 450
BseMI	GCAATG	2 cut(s)	340, 569
BseNI	ACTGG	2 cut(s)	176, 574
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	236
BsiWI	CGTACG	1 cut(s)	28
BslFI	GGGAC	3 cut(s)	222, 317, 346
BsmAI	GTCTC	3 cut(s)	8, 156, 595
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	3 cut(s)	222, 317, 346
Bso31I	GGTCTC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	260, 309, 625
BspACI	CCGC	2 cut(s)	6, 58
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	210, 262, 482
BspPI	GGATC	2 cut(s)	255, 268
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	340, 569
BsrI	ACTGG	2 cut(s)	176, 574
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	260, 309, 625
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	709
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	97, 116, 334, 450
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	263, 312, 628
BstMAI	GTCTC	3 cut(s)	8, 156, 595
BstMBI	GATC	3 cut(s)	260, 309, 625
BstMCI	CGRYCG	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	145, 602
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	97, 116, 334, 450
Cac8I	GCNNGC	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	29, 179
CviAII	CATG	4 cut(s)	142, 307, 599, 664
CviJI	RGCY	8 cut(s)	175, 221, 376, 441, 449, 514, 525, 622
CviKI_1	RGCY	8 cut(s)	175, 221, 376, 441, 449, 514, 525, 622
CviQI	GTAC	2 cut(s)	29, 179
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	3 cut(s)	262, 311, 627
DpnII	GATC	3 cut(s)	260, 309, 625
Eco130I	CCWWGG	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	4 cut(s)	145, 310, 602, 667
FaqI	GGGAC	3 cut(s)	222, 317, 346
FatI	CATG	4 cut(s)	141, 306, 598, 663
FauNDI	CATATG	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	4 cut(s)	104, 123, 341, 457
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	145, 310, 602, 667
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	4 cut(s)	193, 284, 497, 547
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	3 cut(s)	40, 202, 293
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	3 cut(s)	325, 465, 496
Hpy188III	TCNNGA	2 cut(s)	236, 425
Hpy8I	GTNNAC	1 cut(s)	579
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	115, 494
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	3 cut(s)	34, 186, 202
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	3 cut(s)	34, 186, 202
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	145, 310, 602, 667
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	3 cut(s)	260, 309, 625
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	9 cut(s)	189, 240, 249, 264, 286, 427, 587, 591, 671
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	3 cut(s)	48, 418, 611
MaeII	ACGT	3 cut(s)	34, 186, 202
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	3 cut(s)	262, 311, 627
MboI	GATC	3 cut(s)	260, 309, 625
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	3 cut(s)	102, 231, 392
MmeI	TCCRAC	4 cut(s)	97, 443, 484, 658
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	2 cut(s)	380, 642
MspI	CCGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	8
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	3 cut(s)	260, 309, 625
NlaIII	CATG	4 cut(s)	145, 310, 602, 667
NlaIV	GGNNCC	3 cut(s)	210, 262, 482
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	2 cut(s)	145, 602
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	4 cut(s)	193, 284, 497, 547
Pfl23II	CGTACG	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspLI	CGTACG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	210, 262, 482
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	2 cut(s)	30, 180
RsaNI	GTAC	2 cut(s)	29, 179
SaqAI	TTAA	2 cut(s)	380, 642
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	260, 309, 625
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	180
SfaNI	GCATC	3 cut(s)	48, 418, 611
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	102, 231, 392
SsiI	CCGC	2 cut(s)	6, 58
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	3 cut(s)	37, 189, 205
TaqI	TCGA	2 cut(s)	100, 106
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	102, 231, 392
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	193, 284, 497, 547
Tru1I	TTAA	2 cut(s)	380, 642
Tru9I	TTAA	2 cut(s)	380, 642
TseI	GCWGC	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	2 cut(s)	145, 602
ZrmI	AGTACT	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.