Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012493

Physical Location & Seq

Genomic Coordinates Forward (+)

19012196 .. 19015826

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G205900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTGCAGGGACGCAAGGAACTGGGACGAAGAATCATACAGAGAAACCATATTGAAGGAGAGGGAGATCCAAACCCGAACCGTATTCCGAACCGTTTGGGCTCCATCCCTTAACCCTAACCCGGACGCCATCGTCGTCGCCTCCAGCGATGGATCGGTTTCTTCATACCTCATCCCCTCCCTCGTATCCAAGCCCCCCCTGGGTTTTAGCAATGTGAAAGCCCCACACTCGTTAATGGCTAAACCTGCTTGCTTCCTTCAAGCTCACGAAGGCCCTGCATACGATGTTAAGTTTTACGGCCATGGCGAGGATGCTGTTTTACTGAGTTGTGGTGACGATGGTCGGATTCGAGGATGGAAGTGGAAGGATTGTGTAGAAGCAGAGGCGCCTATTCATTTGCAAGGAACCCATGTGAAGCCACTACTTGACCTGGTGAATCCGCAGCATAAAGGTCCGTGGGGGGCTTTATCTCCAATCCCTGAAAACAATGCTCTTGCCGTTAATGATCAGGGGGGATCCATTTTTTCTGCTGCTGGTGATTCTTGTGTCTATTGCTGGGATGTGGAAAGTGGTCAAGTCAAAATGACTTTTAAGGGGCACTCAGACTACTTGCATTCTATAGTTGCCCGGAACTCTACCAATCAGATCATAACTGGTTCAGAGGATGGGACAGCTCGTATATGGGATTGCAGAAGTGGAAAGTGTGTTCAAGTGTATGAGCCAGCAAAGGGTACTAAATTGAAAGGATTTTTTTCGTGCGTAAGTTGCATGGCTCTTGATGCAAGTGAAAGCTGGTTGGCTTGTGGTAGTGGTCGGAGTTTATCAGTTTGGAATCTTCCTGCTTCTGAATGCATTTCAAGGACTTCAACTCGTGCATCTGTACAGGATGTAGTATTCGACGAAAATCAAGTATTAGCAGTTGGAGCAGAACCTCTACTTTGCCGTTATGACATAAACGGGGCGATCCTTTCACAAATGCAATGTGCTCCTCAGTCAGCCTTTTCCGTCTCTTTACATGCATCTGGGGTTACAGCAGTAGGAGGTTACGGAGGTCTTGTTGACATTATTTCGCAGTTCGGAAGCCACTTGTGCACATTCAGCTGCCGATGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016567 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0032446 GO:0032991 GO:0034641 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070647 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

372

Amino Acids

40.06

Weight (kDa)

5.81

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19430
fragaria_vesca	FvH4_1g07921
malus_domestica	MD02G1082800.v1.1 MD15G1210900.v1.1
prunus_persica	Prupe.7G205900_v2.0.a1 Prupe.7G205900_v2.0.a1
pyrus_communis	pycom02g06570 pycom15g18680
rosa_chinensis	RchiOBHm_Chr2g0093801
rosa_multiflora	Rmu_co8487551.1_g000001 Rmu_sc0017523.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147790
rosa_rugosa	Rorug05G0508300
rosa_samantha	Rh2AG086400 Rh2BG086700 Rh2CG089100 Rh2DG084900
rosa_wichuraiana	Rw5G017310 Rw6G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	385
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	5 cut(s)	61, 160, 510, 523, 958
AcoI	YGGCCR	1 cut(s)	298
AcyI	GRCGYC	2 cut(s)	126, 386
AfaI	GTAC	2 cut(s)	733, 882
AfiI	CCNNNNNNNGG	4 cut(s)	121, 200, 307, 728
AgsI	TTSAA	6 cut(s)	55, 260, 710, 742, 858, 867
AjnI	CCWGG	2 cut(s)	198, 429
AloI	GAACNNNNNNTCC	2 cut(s)	690, 722
AluBI	AGCT	4 cut(s)	263, 674, 792, 1101
AluI	AGCT	4 cut(s)	263, 674, 792, 1101
Alw21I	GWGCWC	2 cut(s)	988, 1094
Alw26I	GTCTC	1 cut(s)	1012
Alw44I	GTGCAC	1 cut(s)	1090
AlwI	GGATC	5 cut(s)	61, 160, 510, 523, 958
AoxI	GGCC	2 cut(s)	271, 298
ApaLI	GTGCAC	1 cut(s)	1090
ApeKI	GCWGC	3 cut(s)	442, 530, 1101
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	272, 452
AsuC2I	CCSGG	2 cut(s)	122, 628
AsuHPI	GGTGA	3 cut(s)	344, 445, 548
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	2 cut(s)	600, 1094
BamHI	GGATCC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	988, 1094
BbvI	GCAGC	3 cut(s)	454, 517, 1088
BccI	CCATC	6 cut(s)	112, 137, 143, 332, 348, 659
BceAI	ACGGC	3 cut(s)	313, 482, 927
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	200, 431
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	2 cut(s)	122, 628
BcoDI	GTCTC	1 cut(s)	1012
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	443, 531, 1102
BlsI	GCNGC	3 cut(s)	444, 532, 1103
Bme1390I	CCNGG	4 cut(s)	122, 200, 431, 628
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	272, 452
BmiI	GGNNCC	4 cut(s)	102, 387, 406, 517
BmrFI	CCNGG	4 cut(s)	122, 200, 431, 628
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	4 cut(s)	301, 769, 884, 1028
BmuI	ACTGGG	1 cut(s)	31
BoxI	GACNNNNGTC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	127
BpuMI	CCSGG	2 cut(s)	122, 628
BsaHI	GRCGYC	2 cut(s)	126, 386
BsaJI	CCNNGG	4 cut(s)	198, 199, 301, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	1041, 1071
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 200, 307, 728
Bse1I	ACTGG	2 cut(s)	26, 658
Bse3DI	GCAATG	2 cut(s)	217, 986
BseBI	CCWGG	2 cut(s)	200, 431
BseDI	CCNNGG	4 cut(s)	198, 199, 301, 455
BseGI	GGATG	7 cut(s)	104, 171, 316, 359, 565, 670, 892
BseLI	CCNNNNNNNGG	4 cut(s)	121, 200, 307, 728
BseMI	GCAATG	2 cut(s)	217, 986
BseMII	CTCAG	3 cut(s)	314, 615, 1004
BseNI	ACTGG	2 cut(s)	26, 658
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	2 cut(s)	600, 1094
BseXI	GCAGC	3 cut(s)	454, 517, 1088
BseYI	CCCAGC	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	273, 300
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	988, 1094
BsiSI	CCGG	2 cut(s)	122, 628
BslFI	GGGAC	3 cut(s)	23, 38, 682
BslI	CCNNNNNNNGG	4 cut(s)	121, 200, 307, 728
BsmAI	GTCTC	1 cut(s)	1012
BsmBI	CGTCTC	1 cut(s)	1012
BsmFI	GGGAC	3 cut(s)	23, 38, 682
BsmI	GAATGC	2 cut(s)	613, 854
BsnI	GGCC	2 cut(s)	273, 300
Bsp1286I	GDGCHC	4 cut(s)	103, 600, 988, 1094
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	273, 300
BspCNI	CTCAG	3 cut(s)	315, 614, 1003
BspLI	GGNNCC	4 cut(s)	102, 387, 406, 517
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	5 cut(s)	61, 160, 510, 523, 958
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	217, 986
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	26, 658
BssECI	CCNNGG	4 cut(s)	198, 199, 301, 455
BssMI	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
BssNI	GRCGYC	2 cut(s)	126, 386
BssSI	CACGAG	1 cut(s)	870
BssT1I	CCWWGG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	200, 431
Bst4CI	ACNGT	2 cut(s)	82, 94
BstACI	GRCGYC	2 cut(s)	126, 386
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	2 cut(s)	250, 723
BstDEI	CTNAG	3 cut(s)	323, 601, 990
BstDSI	CCRYGG	2 cut(s)	301, 455
BstF5I	GGATG	7 cut(s)	104, 171, 316, 359, 565, 670, 892
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	6 cut(s)	69, 155, 508, 518, 648, 966
BstMAI	GTCTC	1 cut(s)	1012
BstMBI	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 765, 779, 923, 1089, 1098
BstNI	CCWGG	2 cut(s)	200, 431
BstNSI	RCATGY	1 cut(s)	1019
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	4 cut(s)	120, 198, 429, 626
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	2 cut(s)	600, 1094
BstV1I	GCAGC	3 cut(s)	454, 517, 1088
BstX2I	RGATCY	2 cut(s)	66, 515
BstYI	RGATCY	2 cut(s)	66, 515
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	273, 300
BtgI	CCRYGG	2 cut(s)	301, 455
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	7 cut(s)	104, 171, 316, 359, 565, 670, 892
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	250, 723
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	272, 452
CseI	GACGC	2 cut(s)	20, 134
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	732, 881
CviAII	CATG	4 cut(s)	302, 410, 769, 1016
CviQI	GTAC	2 cut(s)	732, 881
DdeI	CTNAG	3 cut(s)	323, 601, 990
DinI	GGCGCC	1 cut(s)	387
DpnI	GATC	6 cut(s)	68, 154, 507, 517, 647, 965
DpnII	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	198, 429
EcoT14I	CCWWGG	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	854, 1021
EcoT38I	GRGCYC	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	1012
FaeI	CATG	4 cut(s)	305, 413, 772, 1019
FaqI	GGGAC	3 cut(s)	23, 38, 682
FatI	CATG	4 cut(s)	301, 409, 768, 1015
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	443, 531, 1102
FokI	GGATG	7 cut(s)	91, 158, 323, 366, 572, 677, 899
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	443, 531, 1102
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	443, 531, 1102
GsaI	CCCAGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	273, 300
HapII	CCGG	2 cut(s)	122, 628
HgaI	GACGC	2 cut(s)	20, 134
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	2 cut(s)	126, 386
Hin1II	CATG	4 cut(s)	305, 413, 772, 1019
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	1060
HindII	GTYRAC	1 cut(s)	1060
HinfI	GANTC	5 cut(s)	32, 346, 436, 539, 832
HpaII	CCGG	2 cut(s)	122, 628
HphI	GGTGA	3 cut(s)	344, 445, 548
Hpy166II	GTNNAC	2 cut(s)	1060, 1092
Hpy188I	TCNGA	8 cut(s)	89, 345, 604, 645, 661, 816, 847, 1079
Hpy188III	TCNNGA	2 cut(s)	266, 776
Hpy8I	GTNNAC	2 cut(s)	1060, 1092
Hpy99I	CGWCG	3 cut(s)	137, 140, 902
HpyAV	CCTTC	4 cut(s)	49, 263, 266, 358
HpyCH4III	ACNGT	2 cut(s)	82, 94
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 765, 779, 923, 1089, 1098
HpyF3I	CTNAG	3 cut(s)	323, 601, 990
Hsp92I	GRCGYC	2 cut(s)	126, 386
Hsp92II	CATG	4 cut(s)	305, 413, 772, 1019
HspAI	GCGC	1 cut(s)	386
KasI	GGCGCC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
LmnI	GCTCC	3 cut(s)	106, 923, 991
Lsp1109I	GCAGC	3 cut(s)	454, 517, 1088
LweI	GCATC	4 cut(s)	301, 769, 884, 1028
MabI	ACCWGGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	332, 1027, 1043
MalI	GATC	6 cut(s)	68, 154, 507, 517, 647, 965
MboI	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
MboII	GAAGA	3 cut(s)	41, 153, 827
MflI	RGATCY	2 cut(s)	66, 515
MhlI	GDGCHC	4 cut(s)	103, 600, 988, 1094
MluCI	AATT	1 cut(s)	737
Mly113I	GGCGCC	1 cut(s)	386
MmeI	TCCRAC	3 cut(s)	323, 794, 901
Mph1103I	ATGCAT	2 cut(s)	854, 1021
MseI	TTAA	5 cut(s)	111, 233, 288, 501, 591
MspA1I	CMGCKG	1 cut(s)	1101
MspI	CCGG	2 cut(s)	122, 628
MspR9I	CCNGG	4 cut(s)	122, 200, 431, 628
Mva1269I	GAATGC	2 cut(s)	613, 854
MvaI	CCWGG	2 cut(s)	200, 431
MwoI	GCNNNNNNNGC	6 cut(s)	245, 765, 779, 923, 1089, 1098
NarI	GGCGCC	1 cut(s)	386
NciI	CCSGG	2 cut(s)	122, 628
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
NlaIII	CATG	4 cut(s)	305, 413, 772, 1019
NlaIV	GGNNCC	4 cut(s)	102, 387, 406, 517
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	2 cut(s)	854, 1021
NspI	RCATGY	1 cut(s)	1019
PasI	CCCWGGG	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 144, 303
PctI	GAATGC	2 cut(s)	613, 854
PfeI	GAWTC	5 cut(s)	32, 346, 436, 539, 832
PkrI	GCNGC	3 cut(s)	444, 532, 1103
PluTI	GGCGCC	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	198, 429
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	2 cut(s)	198, 429
PspN4I	GGNNCC	4 cut(s)	102, 387, 406, 517
PspPI	GGNCC	2 cut(s)	272, 452
PsuI	RGATCY	2 cut(s)	66, 515
PvuII	CAGCTG	1 cut(s)	1101
RsaI	GTAC	2 cut(s)	733, 882
RsaNI	GTAC	2 cut(s)	732, 881
SaqAI	TTAA	5 cut(s)	111, 233, 288, 501, 591
SatI	GCNGC	3 cut(s)	443, 531, 1102
Sau3AI	GATC	6 cut(s)	66, 152, 505, 515, 645, 963
Sau96I	GGNCC	2 cut(s)	272, 452
ScrFI	CCNGG	4 cut(s)	122, 200, 431, 628
SduI	GDGCHC	4 cut(s)	103, 600, 988, 1094
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	4 cut(s)	301, 769, 884, 1028
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	387
SinI	GGWCC	1 cut(s)	452
Sse9I	AATT	1 cut(s)	737
SsiI	CCGC	1 cut(s)	440
SspDI	GGCGCC	1 cut(s)	385
StyD4I	CCNGG	4 cut(s)	120, 198, 429, 626
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	82, 94
TaqI	TCGA	2 cut(s)	349, 897
TasI	AATT	1 cut(s)	737
TatI	WGTACW	1 cut(s)	880
TfiI	GAWTC	5 cut(s)	32, 346, 436, 539, 832
Tru1I	TTAA	5 cut(s)	111, 233, 288, 501, 591
Tru9I	TTAA	5 cut(s)	111, 233, 288, 501, 591
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	442, 530, 1101
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	153, 383
TspGWI	ACGGA	3 cut(s)	444, 994, 1062
VneI	GTGCAC	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
Zsp2I	ATGCAT	2 cut(s)	854, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.