pycom15g18680

viral mRNA export from host cell nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012493
Physical Location & Seq
Reverse (-)
13265013 .. 13266668
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18680.4

Sequence Viewer

Length: 756 bp
ATGCTCAGAGATTTTCACCAAGCTCAGCTGAATTTCCTGCCTTCCGCCACCAAGTCAACCACCATGTGCGGTGACGCAACGAACTGGGACGAAGAAGTGTACAGAGAATCCATATTAAAGGAGAGGGAGATCCAAACCCGAACCGTTTTCCGAATCGTTTGGGCTCCGTCGCTTAACCCTAGCCAGGAAACCGTCGTCGTCCCTGTTACCCCATCCCCTGCCTCATCTCCAAGCTCGTTGTTAATGGCGGAAGCTACTTGCTATCTTCAAGCGCATGAAGGGCCTGATTACGATGTTAAGTTTTACGGAAATGGCGAAGATTCTGTTTTGCTGAGTTGCGGTGACGATGGACGGATTCAAGGATGGAGGTGGAAGGATTGCGAAGAATTATATGTGCCTCTTCATTTGCAAGGAAAGCACGTGAAGCCGGTACTTGACCTTGTGAATTCTCAACATAAAGATCCATGGGGGGCTTTATCTCCAATCCCTGAAAACAATGCTCTTGCTGTTAATAACGAGGAGGGATGCATTTTTTCTGCTGCTGGTGATTCTTGCTTCTGTTGCTGGGATTTGGAAAGAGGTCAAGTCAAAATGACTTTCAAGGGGCATGCAGACTACGTGCATTCTGTCGTTGCTCGGAATTCTACCAATCAGGTCAGGTCATATTCTTCTTTGTCTTCAGTTGATCGATCATTCCTGTCTCTTCTCTTTGTTCTGAGTTATGTTAATTGTTATGCAAACAACCACCCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0007399 GO:0007417 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009628 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016567 GO:0016604 GO:0016607 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030422 GO:0031047 GO:0031050 GO:0031123 GO:0031124 GO:0031461 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033554 GO:0034605 GO:0034613 GO:0034641 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070647 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1905957 GO:1905958 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

252

Amino Acids

28.12

Weight (kDa)

5.21

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 45, 69, 248, 339
AclWI GGATC 2 cut(s) 124, 455
AcsI RAATTY 3 cut(s) 31, 445, 640
AcuI CTGAAG 1 cut(s) 663
AcvI CACGTG 1 cut(s) 421
AdeI CACNNNGTG 1 cut(s) 66
AfaI GTAC 2 cut(s) 101, 432
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 3 cut(s) 269, 359, 601
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 4 cut(s) 23, 28, 234, 254
AluI AGCT 4 cut(s) 23, 28, 234, 254
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 2 cut(s) 124, 455
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 3 cut(s) 31, 445, 640
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 4 cut(s) 8, 83, 353, 557
BanII GRGCYC 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 526
BccI CCATC 3 cut(s) 220, 341, 357
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 540
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 515
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 688
BsaAI YACGTR 2 cut(s) 421, 619
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 688
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 3 cut(s) 212, 368, 530
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 4 cut(s) 19, 38, 323, 707
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 1 cut(s) 564
BshFI GGCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 688
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 101, 185
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 2 cut(s) 101, 185
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 4 cut(s) 129, 460, 685, 689
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 4 cut(s) 45, 69, 248, 339
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 4 cut(s) 18, 37, 324, 708
BspDI ATCGAT 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 124, 455
BsrFI RCCGGY 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 4 cut(s) 129, 460, 685, 689
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 145, 193
Bst6I CTCTTC 2 cut(s) 405, 708
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 2 cut(s) 421, 619
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 5, 24, 332, 716
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 3 cut(s) 212, 368, 530
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 4 cut(s) 132, 463, 688, 692
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 4 cut(s) 129, 460, 685, 689
BstMWI GCNNNNNNNGC 4 cut(s) 280, 415, 424, 561
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 2 cut(s) 129, 460
BstYI RGATCY 2 cut(s) 129, 460
Bsu15I ATCGAT 1 cut(s) 688
BsuRI GGCC 1 cut(s) 283
BsuTUI ATCGAT 1 cut(s) 688
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 3 cut(s) 212, 368, 530
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 281
ClaI ATCGAT 1 cut(s) 688
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 100, 431
CviAII CATG 4 cut(s) 64, 275, 465, 608
CviJI RGCY 9 cut(s) 23, 28, 164, 183, 234, 254, 283, 427, 473
CviKI_1 RGCY 9 cut(s) 23, 28, 164, 183, 234, 254, 283, 427, 473
CviQI GTAC 2 cut(s) 100, 431
DdeI CTNAG 4 cut(s) 5, 24, 332, 716
DpnI GATC 4 cut(s) 131, 462, 687, 691
DpnII GATC 4 cut(s) 129, 460, 685, 689
DraIII CACNNNGTG 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 405, 708
EarI CTCTTC 2 cut(s) 405, 708
EciI GGCGGA 2 cut(s) 34, 263
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 281
EcoRI GAATTC 2 cut(s) 445, 640
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 530
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 4 cut(s) 67, 278, 468, 611
FaqI GGGAC 2 cut(s) 101, 185
FatI CATG 4 cut(s) 63, 274, 464, 607
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 3 cut(s) 199, 375, 537
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 540
GsaI CCCAGC 1 cut(s) 568
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 274
Hin1II CATG 4 cut(s) 67, 278, 468, 611
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 5 cut(s) 107, 153, 320, 355, 548
HpaII CCGG 1 cut(s) 428
HphI GGTGA 4 cut(s) 8, 83, 353, 557
Hpy166II GTNNAC 2 cut(s) 57, 100
Hpy188I TCNGA 4 cut(s) 8, 152, 639, 717
Hpy8I GTNNAC 2 cut(s) 57, 100
Hpy99I CGWCG 3 cut(s) 172, 197, 200
HpyAV CCTTC 3 cut(s) 51, 272, 367
HpyCH4III ACNGT 2 cut(s) 145, 193
HpyCH4IV ACGT 2 cut(s) 420, 618
HpyCH4V TGCA 5 cut(s) 409, 528, 611, 622, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 415, 424, 561
HpyF3I CTNAG 4 cut(s) 5, 24, 332, 716
HpySE526I ACGT 2 cut(s) 420, 618
Hsp92II CATG 4 cut(s) 67, 278, 468, 611
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 4 cut(s) 129, 460, 685, 689
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 1 cut(s) 515
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 420, 618
MaeIII GTNAC 3 cut(s) 71, 205, 341
MalI GATC 4 cut(s) 131, 462, 687, 691
MboI GATC 4 cut(s) 129, 460, 685, 689
MboII GAAGA 8 cut(s) 104, 257, 329, 392, 395, 660, 669, 695
MflI RGATCY 2 cut(s) 129, 460
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 5 cut(s) 31, 386, 445, 640, 727
MnlI CCTC 7 cut(s) 117, 232, 360, 408, 511, 514, 572
Mph1103I ATGCAT 1 cut(s) 530
MseI TTAA 6 cut(s) 116, 174, 242, 297, 510, 726
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 4 cut(s) 280, 415, 424, 561
NcoI CCATGG 1 cut(s) 464
NdeII GATC 4 cut(s) 129, 460, 685, 689
NlaIII CATG 4 cut(s) 67, 278, 468, 611
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 71, 341
NsiI ATGCAT 1 cut(s) 530
NspI RCATGY 1 cut(s) 611
PaeI GCATGC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 5 cut(s) 107, 153, 320, 355, 548
PkrI GCNGC 1 cut(s) 541
PmaCI CACGTG 1 cut(s) 421
PmlI CACGTG 1 cut(s) 421
Ppu21I YACGTR 2 cut(s) 421, 619
Psp6I CCWGG 1 cut(s) 183
PspCI CACGTG 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 2 cut(s) 129, 460
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 101, 432
RsaNI GTAC 2 cut(s) 100, 431
SaqAI TTAA 6 cut(s) 116, 174, 242, 297, 510, 726
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 4 cut(s) 129, 460, 685, 689
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 515
SphI GCATGC 1 cut(s) 611
Sse9I AATT 5 cut(s) 31, 386, 445, 640, 727
SsiI CCGC 4 cut(s) 45, 69, 248, 339
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 145, 193
TaiI ACGT 2 cut(s) 423, 621
TaqI TCGA 1 cut(s) 688
TasI AATT 5 cut(s) 31, 386, 445, 640, 727
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 5 cut(s) 107, 153, 320, 355, 548
Tru1I TTAA 6 cut(s) 116, 174, 242, 297, 510, 726
Tru9I TTAA 6 cut(s) 116, 174, 242, 297, 510, 726
TseFI GTSAC 2 cut(s) 71, 341
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 71, 341
TspDTI ATGAA 2 cut(s) 291, 392
TspGWI ACGGA 3 cut(s) 156, 321, 367
XapI RAATTY 3 cut(s) 31, 445, 640
XceI RCATGY 1 cut(s) 611
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.