Rw6G040860

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012493
Physical Location & Seq
Reverse (-)
64635408 .. 64636737
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040860.1

Sequence Viewer

Length: 393 bp
ATGCCTATTTATTTGCAAGGAGACCGAGTGAAGCCAGTACTTGACCTGGTGAATCCTCAACGGGGTCCTTGGGGGGCTTTACCTCCAATTCTGGAAAACAATGCTCTTGCTGTTAACAATCAAGGAGGATCCATTTTCTCTGCTACTGGTGATTCTTGTGTCTATTGCTGGGACGTGGTATATTACTTGCATTCAATAGTTGCCCGAAACTCTACAAATCAGATCATAAATGGTTCAGAGCATGGGACGGCACATTGCAAAAGTGGAAAGTCAGTTCAAGTGATTGAGCCATTAAAGAATAATAAATTGAAAGGGTCGTGTGTCAGTTGCATTGGTCTTGATGCAAGTGAAAGCTGGTTGGTAAGCATATATTTTACTACTGCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

130

Amino Acids

14.02

Weight (kDa)

6.25

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 123, 136
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 3 cut(s) 195, 278, 310
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 123, 136
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 61, 161
AvaII GGWCC 1 cut(s) 65
BamHI GGATCC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 66, 130
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 35, 151
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 35, 151
BseYI CCCAGC 1 cut(s) 168
BslFI GGGAC 2 cut(s) 185, 259
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 185, 259
BsmI GAATGC 1 cut(s) 190
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 128, 222
BspLI GGNNCC 2 cut(s) 66, 130
BspPI GGATC 2 cut(s) 123, 136
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 2 cut(s) 35, 151
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 128, 222
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 47
BstKTI GATC 2 cut(s) 131, 225
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 128, 222
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtrI CACGTC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 34, 77, 289, 354
CviKI_1 RGCY 4 cut(s) 34, 77, 289, 354
CviQI GTAC 1 cut(s) 38
DpnI GATC 2 cut(s) 130, 224
DpnII GATC 2 cut(s) 128, 222
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 245
FaiI YATR 5 cut(s) 181, 227, 243, 368, 370
FaqI GGGAC 2 cut(s) 185, 259
FatI CATG 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 52, 152
HpaI GTTAAC 1 cut(s) 115
HphI GGTGA 2 cut(s) 61, 161
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 222, 238
Hpy188III TCNNGA 2 cut(s) 92, 338
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 6 cut(s) 16, 190, 258, 330, 344, 383
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 245
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 128, 222
LpnPI CCDG 7 cut(s) 32, 48, 59, 77, 132, 154, 340
LweI GCATC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 174
MalI GATC 2 cut(s) 130, 224
MboI GATC 2 cut(s) 128, 222
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 87, 305
MnlI CCTC 3 cut(s) 66, 93, 119
MseI TTAA 2 cut(s) 114, 293
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 47
NdeII GATC 2 cut(s) 128, 222
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 66, 130
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 52, 152
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 66, 130
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 114, 293
Sau3AI GATC 2 cut(s) 128, 222
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 47
SetI ASST 4 cut(s) 48, 85, 177, 356
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 65
Sse9I AATT 2 cut(s) 87, 305
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 177
TaqII GACCGA 1 cut(s) 39
TasI AATT 2 cut(s) 87, 305
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 2 cut(s) 52, 152
Tru1I TTAA 2 cut(s) 114, 293
Tru9I TTAA 2 cut(s) 114, 293
VpaK11BI GGWCC 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.