MD15G1210900.v1.1

viral mRNA export from host cell nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012493
Physical Location & Seq
Reverse (-)
16905732 .. 16909565
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1210900.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGCTCAGAGATTTTCACCAAGCTCAGCTGAATTTCCTGCCTTCCGCCACCAAATCAACCACCAGGTGCGGTGACGCAACGAACTGGGACGAAGAAGTGTACAGAGAATCCATATTAAAGGAGATGGAGATCCAAACCCGAAGCGTTTGGGCTCAGTCGCTTAACCCTAGCCCCGAAACCGTCGTCGTCGCCTCCAGCTACGGATCGGTTTCCTCCTACTCCATCCCCTTCCTCATCTCCAAGCTCCCACTGGGTTTTAGCAATGTGAAAGCTCCACATTGCGGCGACGATGGACAGATTCAAGGATGGAGGTGGAAGGATTGCGAAGAATTATGTGTGCCTCTTCATTTGCAAGGAAAGCACGTGAAGCCAGTACTTGACCTTGTGAATCCTCAACATAAAGGTCCATGGGGGGCTTTATCTCCAATCCCTGAAAACAATGCTCTTGCTGTTGATAACAAGGAGGGATGCATTTTTTCAGCTGCTGGTGATTCTTGCGTCTATTGCTGGGATGTGGTATGCATTTGTTCAAGAAATGTTTCAGGAAAGAGGTCAAGTCAAATGACTTTCAAGGGGCATGCATACTACGTGCATTCTGTTGTTGCTCGGAATTCTACCAATCAGGTCAGTTATGATCTGAATACCGGAAAAGATCAAAAGAATCACATTCAGAGTTCAGAGGATGGGGCAGCACGGAGATGGGATTGCAAAAGTGGAAAGTGTGTTCAAGTATATGAGCCAGCCAAGGGTATTAAATTGAAAGGATTTTTTGCGTGCGTTAGTTGCATTGCTCTTGATGCAAATGAAAGCTGGTTGGCTTGTAGTTGTGGTCAGAGTTTATCAGTTTGGAACCTTCTTGCTTCTGAATGCATTTCAAGGGTTTCAACACGTGCATCCATACAGGATGTAGTATTTGACGAAAATCAAGTATTAGCAGTTGGAGCAGAACGTCTACTTTGCCGTTATGACATAAATGGGGCAATTCTATCAAAAATGCAATGTGCTCCTCAGTCTGCCTTTTCCATCTCATTACATCCATCTGGGGTTATCGCAGTAGGAGGTTACGGTGGTCTTGTGGATGTTATGTCGCAGTTCGGAAGTCACTTGTGCACATTTGGCTGCCGATGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0007399 GO:0007417 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009628 GO:0009787 GO:0009788 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016567 GO:0016604 GO:0016607 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0030422 GO:0031047 GO:0031050 GO:0031123 GO:0031124 GO:0031461 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033554 GO:0034605 GO:0034613 GO:0034641 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070647 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901419 GO:1901420 GO:1901564 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1905957 GO:1905958 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

378

Amino Acids

41.17

Weight (kDa)

6.77

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 952
AciI CCGC 3 cut(s) 45, 69, 282
AclWI GGATC 2 cut(s) 124, 211
AcsI RAATTY 2 cut(s) 31, 610
AcvI CACGTG 2 cut(s) 364, 890
AdeI CACNNNGTG 1 cut(s) 66
AfaI GTAC 2 cut(s) 101, 375
AfiI CCNNNNNNNGG 2 cut(s) 281, 746
AflIII ACRYGT 1 cut(s) 887
AgsI TTSAA 7 cut(s) 302, 531, 571, 728, 760, 876, 885
AjnI CCWGG 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 708, 740
AluBI AGCT 7 cut(s) 23, 28, 198, 244, 272, 482, 810
AluI AGCT 7 cut(s) 23, 28, 198, 244, 272, 482, 810
Alw21I GWGCWC 2 cut(s) 1006, 1112
Alw44I GTGCAC 1 cut(s) 1108
AlwI GGATC 2 cut(s) 124, 211
AlwNI CAGNNNCTG 1 cut(s) 485
ApaLI GTGCAC 1 cut(s) 1108
ApeKI GCWGC 3 cut(s) 482, 689, 1119
ApoI RAATTY 2 cut(s) 31, 610
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
Asp700I GAANNNNTTC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 8, 83, 500
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 1112
BanII GRGCYC 1 cut(s) 154
BbrPI CACGTG 2 cut(s) 364, 890
Bbv12I GWGCWC 2 cut(s) 1006, 1112
BbvI GCAGC 3 cut(s) 469, 701, 1106
BccI CCATC 8 cut(s) 118, 230, 284, 300, 677, 693, 1031, 1045
BceAI ACGGC 1 cut(s) 945
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 168
BisI GCNGC 4 cut(s) 283, 483, 690, 1120
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 4 cut(s) 284, 484, 691, 1121
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 851
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 2 cut(s) 94, 260
BmsI GCATC 3 cut(s) 458, 787, 902
BmuI ACTGGG 2 cut(s) 94, 260
BpmI CTGGAG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 24
BsaAI YACGTR 3 cut(s) 364, 589, 890
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 407, 744
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 746
Bse1I ACTGG 3 cut(s) 89, 255, 371
Bse3DI GCAATG 4 cut(s) 268, 277, 786, 1004
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 407, 744
BseGI GGATG 9 cut(s) 222, 311, 473, 517, 688, 893, 910, 1033, 1084
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 281, 746
BseMI GCAATG 4 cut(s) 268, 277, 786, 1004
BseMII CTCAG 4 cut(s) 19, 38, 167, 1022
BseNI ACTGG 3 cut(s) 89, 255, 371
BseRI GAGGAG 1 cut(s) 996
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 3 cut(s) 469, 701, 1106
BseYI CCCAGC 1 cut(s) 507
BsiHKAI GWGCWC 2 cut(s) 1006, 1112
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 281, 746
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 592, 872
Bsp1286I GDGCHC 3 cut(s) 154, 1006, 1112
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 4 cut(s) 129, 203, 634, 652
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 3 cut(s) 45, 69, 282
BspCNI CTCAG 4 cut(s) 18, 37, 166, 1021
BspLI GGNNCC 1 cut(s) 851
BspPI GGATC 2 cut(s) 124, 211
BsrDI GCAATG 4 cut(s) 268, 277, 786, 1004
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 3 cut(s) 89, 255, 371
BssECI CCNNGG 2 cut(s) 407, 744
BssMI GATC 4 cut(s) 129, 203, 634, 652
BssT1I CCWWGG 2 cut(s) 407, 744
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 181, 1067
Bst6I CTCTTC 1 cut(s) 348
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 3 cut(s) 364, 589, 890
BstC8I GCNNGC 3 cut(s) 579, 741, 775
BstDEI CTNAG 4 cut(s) 5, 24, 153, 1008
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 9 cut(s) 222, 311, 473, 517, 688, 893, 910, 1033, 1084
BstKTI GATC 4 cut(s) 132, 206, 637, 655
BstMBI GATC 4 cut(s) 129, 203, 634, 652
BstMWI GCNNNNNNNGC 7 cut(s) 358, 367, 504, 783, 797, 941, 1116
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 469, 701, 1106
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 9 cut(s) 222, 311, 473, 517, 688, 893, 910, 1033, 1084
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 579, 741, 775
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 2 cut(s) 83, 487
CsiI ACCWGGT 1 cut(s) 62
Csp6I GTAC 2 cut(s) 100, 374
CviAII CATG 2 cut(s) 408, 578
CviQI GTAC 2 cut(s) 100, 374
DdeI CTNAG 4 cut(s) 5, 24, 153, 1008
DpnI GATC 4 cut(s) 131, 205, 636, 654
DpnII GATC 4 cut(s) 129, 203, 634, 652
DraIII CACNNNGTG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 407, 744
Eco24I GRGCYC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 404
Eco72I CACGTG 2 cut(s) 364, 890
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 407, 744
EcoT22I ATGCAT 4 cut(s) 473, 524, 583, 872
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 407, 744
FaeI CATG 2 cut(s) 411, 581
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 407, 577
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 283, 483, 690, 1120
FokI GGATG 9 cut(s) 209, 318, 480, 524, 695, 880, 917, 1020, 1091
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 283, 483, 690, 1120
FspBI CTAG 1 cut(s) 168
GluI GCNGC 4 cut(s) 283, 483, 690, 1120
GsaI CCCAGC 1 cut(s) 511
GsuI CTGGAG 1 cut(s) 178
HapII CCGG 1 cut(s) 645
HgaI GACGC 2 cut(s) 83, 487
Hin1II CATG 2 cut(s) 411, 581
HinfI GANTC 5 cut(s) 107, 298, 388, 491, 661
HpaII CCGG 1 cut(s) 645
HphI GGTGA 3 cut(s) 8, 83, 500
Hpy166II GTNNAC 3 cut(s) 100, 953, 1110
Hpy188I TCNGA 8 cut(s) 8, 609, 639, 672, 679, 834, 865, 1097
Hpy188III TCNNGA 3 cut(s) 531, 543, 794
Hpy8I GTNNAC 3 cut(s) 100, 953, 1110
Hpy99I CGWCG 4 cut(s) 185, 188, 191, 290
HpyAV CCTTC 4 cut(s) 51, 238, 310, 863
HpyCH4III ACNGT 2 cut(s) 181, 1067
HpyCH4IV ACGT 4 cut(s) 363, 588, 889, 949
HpyF10VI GCNNNNNNNGC 7 cut(s) 358, 367, 504, 783, 797, 941, 1116
HpyF3I CTNAG 4 cut(s) 5, 24, 153, 1008
HpySE526I ACGT 4 cut(s) 363, 588, 889, 949
Hsp92II CATG 2 cut(s) 411, 581
Kzo9I GATC 4 cut(s) 129, 203, 634, 652
LmnI GCTCC 4 cut(s) 249, 277, 941, 1009
Lsp1109I GCAGC 3 cut(s) 469, 701, 1106
LweI GCATC 3 cut(s) 458, 787, 902
MabI ACCWGGT 1 cut(s) 62
MaeI CTAG 1 cut(s) 168
MaeII ACGT 4 cut(s) 363, 588, 889, 949
MaeIII GTNAC 3 cut(s) 71, 1061, 1100
MalI GATC 4 cut(s) 131, 205, 636, 654
MboI GATC 4 cut(s) 129, 203, 634, 652
MboII GAAGA 3 cut(s) 104, 335, 338
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 154, 1006, 1112
MluCI AATT 5 cut(s) 31, 329, 610, 755, 981
MmeI TCCRAC 1 cut(s) 919
Mph1103I ATGCAT 4 cut(s) 473, 524, 583, 872
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 4 cut(s) 116, 162, 753, 1132
MslI CAYNNNNRTG 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 28, 482
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 2 cut(s) 592, 872
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 7 cut(s) 358, 367, 504, 783, 797, 941, 1116
NcoI CCATGG 1 cut(s) 407
NdeII GATC 4 cut(s) 129, 203, 634, 652
NlaIII CATG 2 cut(s) 411, 581
NlaIV GGNNCC 1 cut(s) 851
NmuCI GTSAC 2 cut(s) 71, 1100
NsiI ATGCAT 4 cut(s) 473, 524, 583, 872
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PctI GAATGC 2 cut(s) 592, 872
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 5 cut(s) 107, 298, 388, 491, 661
PkrI GCNGC 4 cut(s) 284, 484, 691, 1121
PmaCI CACGTG 2 cut(s) 364, 890
PmlI CACGTG 2 cut(s) 364, 890
Ppu21I YACGTR 3 cut(s) 364, 589, 890
Psp6I CCWGG 1 cut(s) 62
PspCI CACGTG 2 cut(s) 364, 890
PspFI CCCAGC 1 cut(s) 507
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 851
PspPI GGNCC 1 cut(s) 404
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 129
PvuII CAGCTG 2 cut(s) 28, 482
RsaI GTAC 2 cut(s) 101, 375
RsaNI GTAC 2 cut(s) 100, 374
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 4 cut(s) 116, 162, 753, 1132
SatI GCNGC 4 cut(s) 283, 483, 690, 1120
Sau3AI GATC 4 cut(s) 129, 203, 634, 652
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 3 cut(s) 154, 1006, 1112
SexAI ACCWGGT 1 cut(s) 62
SfaNI GCATC 3 cut(s) 458, 787, 902
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 697
SphI GCATGC 1 cut(s) 581
Sse9I AATT 5 cut(s) 31, 329, 610, 755, 981
SsiI CCGC 3 cut(s) 45, 69, 282
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 2 cut(s) 407, 744
TaaI ACNGT 2 cut(s) 181, 1067
TaiI ACGT 4 cut(s) 366, 591, 892, 952
TasI AATT 5 cut(s) 31, 329, 610, 755, 981
TatI WGTACW 2 cut(s) 99, 373
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 5 cut(s) 107, 298, 388, 491, 661
Tru1I TTAA 4 cut(s) 116, 162, 753, 1132
Tru9I TTAA 4 cut(s) 116, 162, 753, 1132
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 71, 1100
TseI GCWGC 3 cut(s) 482, 689, 1119
Tsp45I GTSAC 2 cut(s) 71, 1100
TspDTI ATGAA 2 cut(s) 335, 819
TspGWI ACGGA 2 cut(s) 216, 709
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 1108
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 2 cut(s) 31, 610
XceI RCATGY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 952
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 375
Zsp2I ATGCAT 4 cut(s) 473, 524, 583, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.