FvH4_1g07921

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012493
Physical Location & Seq
Reverse (-)
4185503 .. 4188676
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07921.t1

Sequence Viewer

Length: 1116 bp
ATGTGCGGGGACGCAACGAACTGGGACGAAGAGTCCTACAGAGAAAGCATCCTAAAAGAGCGAGAGATCCAAACCCGAACCGTTTTCAGAACCGCCTGGGCTCCCTCCCTTAACTCTAACCCGGACTCCATCGTCGTCGCCTCCAGCGACGGATCCGTCTCCTCCTACTCCATCTCCTCCCTCGTCTCCAACCTCCCGCTGGGTTTCAGCAATGTGAAAGCTCCGTATTTGTTGATAGCGGAACCGAGTTGCTTCCTTCGAGCGCATGAGGGGCCCGCATATGATGTTAAGTTTTACGGTGAAGGGGAAGAGTCTATGCTGCTAAGCTGTGGGGATGATGGTCGGATTCGAGGATGGAGGTGGAAGGATTGCGTACAGTCGGACTCCGAGGTGCCTATACATTTTCAAGGAGAGCAATTGAAGCCAGTACTTGACCTGGTGAATCCTCAACATAAGGGTCCTTGGGGGGCATTATCTCCAATTCCTGAAAACAATGCTCTTGCTGTTAATAATCAAGGAGGATCCATTTTCTCTGCTGCTGGTGATTCTTGTGTCTATTGCTGGGATGTGGAAACAGGACAAGTGAAAATGATCTTTAAGGGGCACTCAGACTACTTGCATTCCATAGTTGCCCGAAACTCTACAAATCAGATAATAACTGGTTCGGAGGATGGGACAGCACGTATATGGGATTGCAAAAGTGGAAAGTCTGTTAAAGTGATTGAGCCAGCAAAGAGTACTAAATTGAAAGGGTCCTGTGTCAGTTGCATTGCTCTGGATGCAAGTGAAAGCTGGTTGGCTTGTGGTAGCGGTCGGAGTTTATCAGTATGGAACCTTCCTGCTTCTGAATGCATTTCAAGGACTTCAACTCATGCATCTGTACAGGATGTAGTATTTGATGAAAATCAAATATTAGCAGTTGGAGCAGAGCCTCTACTTAGCCGTTTTGACATAAATGGGGTGATTCTTTCACAAATGCAATGTGCTCCTCAATCGGCCTTTTCTGTCTCATTACATGCATCTGGGGTTACAGCAATAGGAGGTTACGGAGGAGTTGTGGATGTTATTTCCCAGTTTGGAAGCCATCTCTGCACGTTTGGCTGCAAATATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

372

Amino Acids

39.89

Weight (kDa)

5.13

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR41 PF25178 141 - 291 6.2e-14 WDR41
Beta-prop_THOC3 PF25174 165 - 306 5e-14 THOC3 beta-propeller domain
WD40_Prp19 PF24814 165 - 293 5.5e-13 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 165 - 243 9.9e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 166 - 242 2.8e-11 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 166 - 300 1.4e-14 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 166 - 303 2.5e-11 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 166 - 270 6.2e-07 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 167 - 288 1.5e-12 WDR55
EIF3I PF24805 169 - 246 1.1e-09 EIF3I
WD40_Gbeta PF25391 175 - 237 8.3e-08 G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd PF25047 176 - 234 5.6e-06 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 155
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 6 cut(s) 6, 93, 197, 239, 276, 810
AclWI GGATC 5 cut(s) 61, 147, 160, 516, 529
AfaI GTAC 4 cut(s) 375, 429, 739, 882
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 5 cut(s) 407, 421, 748, 858, 867
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 95, 435
AluBI AGCT 3 cut(s) 221, 327, 792
AluI AGCT 3 cut(s) 221, 327, 792
Alw21I GWGCWC 1 cut(s) 988
Alw26I GTCTC 3 cut(s) 163, 190, 1012
AlwI GGATC 5 cut(s) 61, 147, 160, 516, 529
AoxI GGCC 2 cut(s) 272, 996
ApaI GGGCCC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 319, 536, 1101
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 4 cut(s) 272, 273, 458, 753
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 4 cut(s) 311, 451, 554, 973
AvaII GGWCC 2 cut(s) 458, 753
BaeGI GKGCMC 2 cut(s) 276, 606
BamHI GGATCC 2 cut(s) 152, 521
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 2 cut(s) 103, 276
BarI GAAGNNNNNNTAC 2 cut(s) 819, 851
Bbv12I GWGCWC 1 cut(s) 988
BbvI GCAGC 3 cut(s) 306, 523, 1088
BccI CCATC 6 cut(s) 137, 179, 332, 348, 665, 1092
BceAI ACGGC 1 cut(s) 927
BciT130I CCWGG 2 cut(s) 97, 437
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 163, 190, 1012
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 3 cut(s) 320, 537, 1102
BlpI GCTNAGC 1 cut(s) 323
BlsI GCNGC 3 cut(s) 321, 538, 1103
BmcAI AGTACT 2 cut(s) 429, 739
Bme1390I CCNGG 3 cut(s) 97, 122, 437
Bme18I GGWCC 2 cut(s) 458, 753
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 272, 273, 458, 753
BmrFI CCNGG 3 cut(s) 97, 122, 437
BmrI ACTGGG 2 cut(s) 31, 1066
BmsI GCATC 4 cut(s) 57, 769, 884, 1028
BmuI ACTGGG 2 cut(s) 31, 1066
BpmI CTGGAG 1 cut(s) 127
Bpu1102I GCTNAGC 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 903
BsaJI CCNNGG 3 cut(s) 96, 387, 461
BsaXI ACNNNNNCTCC 6 cut(s) 110, 140, 158, 188, 1041, 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 4 cut(s) 26, 425, 664, 1072
Bse3DI GCAATG 3 cut(s) 217, 768, 986
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 2 cut(s) 97, 437
BseDI CCNNGG 3 cut(s) 96, 387, 461
BseGI GGATG 8 cut(s) 48, 340, 359, 571, 676, 784, 892, 1066
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 3 cut(s) 217, 768, 986
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 4 cut(s) 26, 425, 664, 1072
BseRI GAGGAG 4 cut(s) 151, 166, 978, 1065
BseSI GKGCMC 2 cut(s) 276, 606
BseXI GCAGC 3 cut(s) 306, 523, 1088
BseYI CCCAGC 2 cut(s) 199, 561
BsgI GTGCAG 1 cut(s) 1075
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 2 cut(s) 274, 998
BshNI GGYRCC 1 cut(s) 391
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 988
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 3 cut(s) 23, 38, 688
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 3 cut(s) 163, 190, 1012
BsmBI CGTCTC 2 cut(s) 163, 190
BsmFI GGGAC 3 cut(s) 23, 38, 688
BsmI GAATGC 2 cut(s) 619, 854
BsnI GGCC 2 cut(s) 274, 998
Bsp120I GGGCCC 1 cut(s) 272
Bsp1286I GDGCHC 4 cut(s) 103, 276, 606, 988
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 4 cut(s) 66, 152, 521, 591
Bsp1720I GCTNAGC 1 cut(s) 323
BspACI CCGC 6 cut(s) 6, 93, 197, 239, 276, 810
BspANI GGCC 2 cut(s) 274, 998
BspCNI CTCAG 1 cut(s) 620
BspPI GGATC 5 cut(s) 61, 147, 160, 516, 529
BspT107I GGYRCC 1 cut(s) 391
BsrDI GCAATG 3 cut(s) 217, 768, 986
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 4 cut(s) 26, 425, 664, 1072
BssECI CCNNGG 3 cut(s) 96, 387, 461
BssMI GATC 4 cut(s) 66, 152, 521, 591
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 2 cut(s) 97, 437
Bst4CI ACNGT 3 cut(s) 82, 299, 378
Bst6I CTCTTC 2 cut(s) 24, 303
BstAUI TGTACA 1 cut(s) 880
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 276, 729
BstDEI CTNAG 3 cut(s) 323, 607, 938
BstF5I GGATG 8 cut(s) 48, 340, 359, 571, 676, 784, 892, 1066
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 69, 155, 524, 594
BstMAI GTCTC 3 cut(s) 163, 190, 1012
BstMBI GATC 4 cut(s) 66, 152, 521, 591
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 6 cut(s) 271, 421, 779, 923, 1089, 1098
BstNI CCWGG 2 cut(s) 97, 437
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 3 cut(s) 95, 120, 435
BstSFI CTRYAG 1 cut(s) 37
BstSLI GKGCMC 2 cut(s) 276, 606
BstV1I GCAGC 3 cut(s) 306, 523, 1088
BstX2I RGATCY 3 cut(s) 66, 152, 521
BstYI RGATCY 3 cut(s) 66, 152, 521
BsuRI GGCC 2 cut(s) 274, 998
BtsCI GGATG 8 cut(s) 48, 340, 359, 571, 676, 784, 892, 1066
Cac8I GCNNGC 2 cut(s) 276, 729
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 4 cut(s) 272, 273, 458, 753
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 4 cut(s) 374, 428, 738, 881
CviAII CATG 3 cut(s) 266, 872, 1016
CviQI GTAC 4 cut(s) 374, 428, 738, 881
DdeI CTNAG 3 cut(s) 323, 607, 938
DpnI GATC 4 cut(s) 68, 154, 523, 593
DpnII GATC 4 cut(s) 66, 152, 521, 591
DrdI GACNNNNNNGTC 2 cut(s) 131, 155
DriI GACNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 2 cut(s) 131, 155
Eam1104I CTCTTC 2 cut(s) 24, 303
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 2 cut(s) 24, 303
Eco130I CCWWGG 1 cut(s) 461
Eco24I GRGCYC 2 cut(s) 103, 276
Eco47I GGWCC 2 cut(s) 458, 753
EcoO109I RGGNCCY 3 cut(s) 272, 458, 753
EcoRII CCWGG 2 cut(s) 95, 435
EcoT14I CCWWGG 1 cut(s) 461
EcoT22I ATGCAT 3 cut(s) 854, 877, 1021
EcoT38I GRGCYC 2 cut(s) 103, 276
ErhI CCWWGG 1 cut(s) 461
Esp3I CGTCTC 2 cut(s) 163, 190
FaeI CATG 3 cut(s) 269, 875, 1019
FaqI GGGAC 3 cut(s) 23, 38, 688
FatI CATG 3 cut(s) 265, 871, 1015
FauI CCCGC 2 cut(s) 204, 283
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 320, 537, 1102
FokI GGATG 8 cut(s) 35, 347, 366, 578, 683, 791, 899, 1073
FriOI GRGCYC 2 cut(s) 103, 276
Fsp4HI GCNGC 3 cut(s) 320, 537, 1102
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 320, 537, 1102
GsaI CCCAGC 2 cut(s) 203, 565
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 274, 998
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 269, 875, 1019
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 8 cut(s) 32, 125, 311, 346, 383, 442, 545, 964
HpaII CCGG 1 cut(s) 122
HphI GGTGA 4 cut(s) 311, 451, 554, 973
Hpy188I TCNGA 9 cut(s) 89, 345, 382, 388, 610, 651, 667, 816, 847
Hpy188III TCNNGA 2 cut(s) 485, 776
Hpy99I CGWCG 3 cut(s) 137, 140, 152
HpyAV CCTTC 4 cut(s) 266, 296, 358, 845
HpyCH4III ACNGT 3 cut(s) 82, 299, 378
HpyCH4IV ACGT 2 cut(s) 682, 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 271, 421, 779, 923, 1089, 1098
HpyF3I CTNAG 3 cut(s) 323, 607, 938
HpySE526I ACGT 2 cut(s) 682, 1094
Hsp92II CATG 3 cut(s) 269, 875, 1019
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 4 cut(s) 66, 152, 521, 591
LmnI GCTCC 4 cut(s) 106, 226, 923, 991
Lsp1109I GCAGC 3 cut(s) 306, 523, 1088
LweI GCATC 4 cut(s) 57, 769, 884, 1028
MabI ACCWGGT 1 cut(s) 435
MaeII ACGT 2 cut(s) 682, 1094
MaeIII GTNAC 2 cut(s) 1027, 1043
MalI GATC 4 cut(s) 68, 154, 523, 593
MboI GATC 4 cut(s) 66, 152, 521, 591
MboII GAAGA 2 cut(s) 41, 320
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 3 cut(s) 66, 152, 521
MhlI GDGCHC 4 cut(s) 103, 276, 606, 988
MluCI AATT 3 cut(s) 416, 480, 743
MlyI GAGTC 4 cut(s) 41, 119, 320, 377
MmeI TCCRAC 5 cut(s) 213, 323, 360, 794, 901
Mph1103I ATGCAT 3 cut(s) 854, 877, 1021
MseI TTAA 6 cut(s) 111, 288, 507, 597, 714, 1114
MslI CAYNNNNRTG 1 cut(s) 685
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 3 cut(s) 97, 122, 437
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 2 cut(s) 619, 854
MvaI CCWGG 2 cut(s) 97, 437
MwoI GCNNNNNNNGC 6 cut(s) 271, 421, 779, 923, 1089, 1098
NciI CCSGG 1 cut(s) 122
NdeI CATATG 1 cut(s) 280
NdeII GATC 4 cut(s) 66, 152, 521, 591
NlaIII CATG 3 cut(s) 269, 875, 1019
NsiI ATGCAT 3 cut(s) 854, 877, 1021
NspI RCATGY 1 cut(s) 1019
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 2 cut(s) 619, 854
PfeI GAWTC 4 cut(s) 346, 442, 545, 964
PkrI GCNGC 3 cut(s) 321, 538, 1103
PleI GAGTC 4 cut(s) 40, 119, 319, 377
PpsI GAGTC 4 cut(s) 40, 119, 319, 377
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 2 cut(s) 458, 753
Psp5II RGGWCCY 2 cut(s) 458, 753
Psp6I CCWGG 2 cut(s) 95, 435
PspFI CCCAGC 2 cut(s) 199, 561
PspGI CCWGG 2 cut(s) 95, 435
PspOMI GGGCCC 1 cut(s) 272
PspPI GGNCC 4 cut(s) 272, 273, 458, 753
PspPPI RGGWCCY 2 cut(s) 458, 753
PsuI RGATCY 3 cut(s) 66, 152, 521
RsaI GTAC 4 cut(s) 375, 429, 739, 882
RsaNI GTAC 4 cut(s) 374, 428, 738, 881
RseI CAYNNNNRTG 1 cut(s) 685
SaqAI TTAA 6 cut(s) 111, 288, 507, 597, 714, 1114
SatI GCNGC 3 cut(s) 320, 537, 1102
Sau3AI GATC 4 cut(s) 66, 152, 521, 591
Sau96I GGNCC 4 cut(s) 272, 273, 458, 753
ScaI AGTACT 2 cut(s) 429, 739
SchI GAGTC 4 cut(s) 41, 119, 320, 377
ScrFI CCNGG 3 cut(s) 97, 122, 437
SduI GDGCHC 4 cut(s) 103, 276, 606, 988
SexAI ACCWGGT 1 cut(s) 435
SfaNI GCATC 4 cut(s) 57, 769, 884, 1028
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 2 cut(s) 458, 753
SmiMI CAYNNNNRTG 1 cut(s) 685
Sse9I AATT 3 cut(s) 416, 480, 743
SsiI CCGC 6 cut(s) 6, 93, 197, 239, 276, 810
SspI AATATT 1 cut(s) 912
StyD4I CCNGG 3 cut(s) 95, 120, 435
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 82, 299, 378
TaiI ACGT 2 cut(s) 685, 1097
TaqI TCGA 2 cut(s) 259, 349
TasI AATT 3 cut(s) 416, 480, 743
TatI WGTACW 3 cut(s) 427, 737, 880
TfiI GAWTC 4 cut(s) 346, 442, 545, 964
Tru1I TTAA 6 cut(s) 111, 288, 507, 597, 714, 1114
Tru9I TTAA 6 cut(s) 111, 288, 507, 597, 714, 1114
TseI GCWGC 3 cut(s) 319, 536, 1101
TspDTI ATGAA 1 cut(s) 915
TspGWI ACGGA 4 cut(s) 145, 165, 213, 1062
VpaK11BI GGWCC 2 cut(s) 458, 753
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
ZrmI AGTACT 2 cut(s) 429, 739
Zsp2I ATGCAT 3 cut(s) 854, 877, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.