Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012493

Physical Location & Seq

Genomic Coordinates Reverse (-)

4565867 .. 4569100

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTGCGGCGACGCAACGAACTGGGACGAAGAAGCATACAGAGAATCCATTTTGAAGGAGCGAGAGATCCAAACCCGAACAGTTTTCCGAACCGTTTGGGCTCCGTCGCTTAACCCTAACCCGGACACCGTCGTCGTCGCCTCCAGCGACGGATCGGTTTCCTCCTACTCCATCCCCTCCCTTATCTCCAAGCTCCCACTGGGTTTCAGCAATGTGAAATCGCCAAATGTTTGGAGGTCGTTAATGGCGGAACCTACTTGCTTCCTTCAAGCTCATGAAGGACCTGCTTATGATGTTAAGTTTTACGGAAATGGCGAAGATTCTGTTTTGTTGAGTTGCGGTGATGATGGACGGATTCAAGGATGGAGGTGGAAGGATTGGGAAGAATCAGATGTGCCTATTCATTTGCAAGGAAAGCATGTGAAGCCCATAATTGACCTTGTGAATCCCCAACATAAAGGTCCATGGGGGGCTTTATCTCCAATCCCAGAAAACAATGCTCTAGCTGTTTATAACGAGGGGGGATGTATTTTTTCTGCTGCCGGTGATTCTTGCGTCTATTGCTGGGATGTGGAAAGAGGTCAAGTCAAAATGACTTTTAAGGGGCATTCAGACTACTTGCATTCTGTAGTTGCTCGGAACTCTACCAATCAGATCATAACTGGTTCAGAGGATGGGACAGCACGGATATGGGATTGCAAAAGTGGAAAGTGCGTTCAAGTATATGAGCCAGCCAAGGGTATTAAGTTGAAAGGATTTTTTTCGTGCGTCAGTTGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCTTGCGGTAGCGGTCAGAGTTTATCAGTTTGGAACCTTCCTGCTTCTGAATGCATTTCAAGGGTTTCAACTTGTGCATCCGTACAGGATGTAGTATTCGATGAAAACCAAGTATTAGCAGTTGGAGCAGAACCTCTGCTTTCCCGTTTTGACATTAATGGGGCGATTCTTTCACAAATGCAATGTGCTCCTCAGTCTGCTTTTTCCGTCTCATTACATCCATCTGGGGTTACCGCAGTAGGAGGTTACGGTGGTCTTGTGGATGTTATTTCGCAGTTCGGAAGCCACTTGTGCACATTCGGCTGCCGATGCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C WD40

Protein Analysis

375

Amino Acids

40.48

Weight (kDa)

5.12

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19430
fragaria_vesca	FvH4_1g07921
malus_domestica	MD02G1082800.v1.1 MD15G1210900.v1.1
prunus_persica	Prupe.7G205900_v2.0.a1 Prupe.7G205900_v2.0.a1
pyrus_communis	pycom02g06570 pycom15g18680
rosa_chinensis	RchiOBHm_Chr2g0093801
rosa_multiflora	Rmu_co8487551.1_g000001 Rmu_sc0017523.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147790
rosa_rugosa	Rorug05G0508300
rosa_samantha	Rh2AG086400 Rh2BG086700 Rh2CG089100 Rh2DG084900
rosa_wichuraiana	Rw5G017310 Rw6G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	6 cut(s)	6, 248, 339, 813, 819, 1041
AclWI	GGATC	2 cut(s)	61, 160
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	2 cut(s)	121, 737
AgsI	TTSAA	7 cut(s)	55, 269, 359, 719, 751, 867, 876
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	4 cut(s)	193, 272, 506, 801
AluI	AGCT	4 cut(s)	193, 272, 506, 801
Alw21I	GWGCWC	2 cut(s)	997, 1103
Alw26I	GTCTC	1 cut(s)	1021
Alw44I	GTGCAC	1 cut(s)	1099
AlwI	GGATC	2 cut(s)	61, 160
ApaLI	GTGCAC	1 cut(s)	1099
ApeKI	GCWGC	2 cut(s)	539, 1110
AseI	ATTAAT	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	281, 461
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	353, 557
AvaII	GGWCC	2 cut(s)	281, 461
BaeGI	GKGCMC	1 cut(s)	1103
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	2 cut(s)	997, 1103
BbvI	GCAGC	2 cut(s)	526, 1097
BccI	CCATC	5 cut(s)	179, 341, 357, 668, 1036
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	1021
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	7, 540, 1111
BlsI	GCNGC	3 cut(s)	8, 541, 1112
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	281, 461
BmgT120I	GGNCC	2 cut(s)	281, 461
BmiI	GGNNCC	3 cut(s)	102, 252, 842
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	2 cut(s)	31, 209
BmsI	GCATC	3 cut(s)	778, 893, 1106
BmuI	ACTGGG	2 cut(s)	31, 209
BpmI	CTGGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	464, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 737
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	26, 204, 667
Bse3DI	GCAATG	3 cut(s)	217, 777, 995
BseDI	CCNNGG	2 cut(s)	464, 735
BseGI	GGATG	9 cut(s)	171, 368, 530, 574, 679, 884, 901, 1024, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	121, 737
BseMI	GCAATG	3 cut(s)	217, 777, 995
BseMII	CTCAG	1 cut(s)	1013
BseNI	ACTGG	3 cut(s)	26, 204, 667
BseRI	GAGGAG	1 cut(s)	987
BseSI	GKGCMC	1 cut(s)	1103
BseXI	GCAGC	2 cut(s)	526, 1097
BseYI	CCCAGC	1 cut(s)	564
BsiHKAI	GWGCWC	2 cut(s)	997, 1103
BsiSI	CCGG	2 cut(s)	122, 543
BslFI	GGGAC	2 cut(s)	38, 691
BslI	CCNNNNNNNGG	2 cut(s)	121, 737
BsmAI	GTCTC	1 cut(s)	1021
BsmBI	CGTCTC	1 cut(s)	1021
BsmFI	GGGAC	2 cut(s)	38, 691
BsmI	GAATGC	3 cut(s)	607, 622, 863
Bsp1286I	GDGCHC	3 cut(s)	103, 997, 1103
Bsp143I	GATC	3 cut(s)	66, 152, 654
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	6 cut(s)	6, 248, 339, 813, 819, 1041
BspCNI	CTCAG	1 cut(s)	1012
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	102, 252, 842
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	61, 160
BsrDI	GCAATG	3 cut(s)	217, 777, 995
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	26, 204, 667
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	464, 735
BssMI	GATC	3 cut(s)	66, 152, 654
BssT1I	CCWWGG	2 cut(s)	464, 735
Bst4CI	ACNGT	4 cut(s)	82, 94, 130, 1058
BstC8I	GCNNGC	2 cut(s)	732, 811
BstDEI	CTNAG	1 cut(s)	999
BstDSI	CCRYGG	1 cut(s)	464
BstEII	GGTNACC	1 cut(s)	1036
BstF5I	GGATG	9 cut(s)	171, 368, 530, 574, 679, 884, 901, 1024, 1075
BstKTI	GATC	3 cut(s)	69, 155, 657
BstMAI	GTCTC	1 cut(s)	1021
BstMBI	GATC	3 cut(s)	66, 152, 654
BstMWI	GCNNNNNNNGC	9 cut(s)	415, 424, 561, 774, 788, 932, 1098, 1107, 1116
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	1036
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	1103
BstV1I	GCAGC	2 cut(s)	526, 1097
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	9 cut(s)	171, 368, 530, 574, 679, 884, 901, 1024, 1075
BtsIMutI	CAGTG	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	732, 811
CciI	TCATGA	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	281, 461
CseI	GACGC	3 cut(s)	20, 544, 757
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	3 cut(s)	275, 419, 465
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	1 cut(s)	999
DpnI	GATC	3 cut(s)	68, 154, 656
DpnII	GATC	3 cut(s)	66, 152, 654
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	464, 735
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	281, 461
Eco91I	GGTNACC	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	1036
EcoT14I	CCWWGG	2 cut(s)	464, 735
EcoT22I	ATGCAT	1 cut(s)	863
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	2 cut(s)	464, 735
Esp3I	CGTCTC	1 cut(s)	1021
FaeI	CATG	3 cut(s)	278, 422, 468
FaqI	GGGAC	2 cut(s)	38, 691
FatI	CATG	3 cut(s)	274, 418, 464
Fnu4HI	GCNGC	3 cut(s)	7, 540, 1111
FokI	GGATG	9 cut(s)	158, 375, 537, 581, 686, 871, 908, 1011, 1082
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	7, 540, 1111
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	3 cut(s)	7, 540, 1111
GsaI	CCCAGC	1 cut(s)	568
GsuI	CTGGAG	1 cut(s)	127
HapII	CCGG	2 cut(s)	122, 543
HgaI	GACGC	3 cut(s)	20, 544, 757
Hin1II	CATG	3 cut(s)	278, 422, 468
HinfI	GANTC	7 cut(s)	44, 320, 355, 386, 445, 548, 973
HpaII	CCGG	2 cut(s)	122, 543
HphI	GGTGA	2 cut(s)	353, 557
Hpy166II	GTNNAC	1 cut(s)	1101
Hpy188I	TCNGA	9 cut(s)	89, 391, 613, 639, 654, 670, 825, 856, 1088
Hpy188III	TCNNGA	2 cut(s)	275, 785
Hpy8I	GTNNAC	1 cut(s)	1101
Hpy99I	CGWCG	6 cut(s)	14, 109, 134, 137, 140, 152
HpyAV	CCTTC	5 cut(s)	49, 272, 275, 367, 854
HpyCH4III	ACNGT	4 cut(s)	82, 94, 130, 1058
HpyCH4V	TGCA	9 cut(s)	409, 622, 699, 777, 791, 861, 884, 988, 1101
HpyF10VI	GCNNNNNNNGC	9 cut(s)	415, 424, 561, 774, 788, 932, 1098, 1107, 1116
HpyF3I	CTNAG	1 cut(s)	999
Hsp92II	CATG	3 cut(s)	278, 422, 468
Kzo9I	GATC	3 cut(s)	66, 152, 654
LmnI	GCTCC	5 cut(s)	58, 106, 198, 932, 1000
Lsp1109I	GCAGC	2 cut(s)	526, 1097
LweI	GCATC	3 cut(s)	778, 893, 1106
MaeI	CTAG	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	1036, 1052
MalI	GATC	3 cut(s)	68, 154, 656
MboI	GATC	3 cut(s)	66, 152, 654
MboII	GAAGA	3 cut(s)	41, 329, 395
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	3 cut(s)	103, 997, 1103
MluCI	AATT	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	910
Mph1103I	ATGCAT	1 cut(s)	863
MseI	TTAA	6 cut(s)	111, 242, 297, 600, 744, 963
MslI	CAYNNNNRTG	1 cut(s)	688
MspI	CCGG	2 cut(s)	122, 543
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	3 cut(s)	607, 622, 863
MwoI	GCNNNNNNNGC	9 cut(s)	415, 424, 561, 774, 788, 932, 1098, 1107, 1116
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	3 cut(s)	66, 152, 654
NlaIII	CATG	3 cut(s)	278, 422, 468
NlaIV	GGNNCC	3 cut(s)	102, 252, 842
NsiI	ATGCAT	1 cut(s)	863
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 312
PctI	GAATGC	3 cut(s)	607, 622, 863
PfeI	GAWTC	7 cut(s)	44, 320, 355, 386, 445, 548, 973
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	8, 541, 1112
PpuMI	RGGWCCY	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	963
PsiI	TTATAA	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	1036
PspFI	CCCAGC	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	102, 252, 842
PspPI	GGNCC	2 cut(s)	281, 461
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	6 cut(s)	111, 242, 297, 600, 744, 963
SatI	GCNGC	3 cut(s)	7, 540, 1111
Sau3AI	GATC	3 cut(s)	66, 152, 654
Sau96I	GGNCC	2 cut(s)	281, 461
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	3 cut(s)	103, 997, 1103
SfaNI	GCATC	3 cut(s)	778, 893, 1106
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	2 cut(s)	281, 461
SmiMI	CAYNNNNRTG	1 cut(s)	688
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	6 cut(s)	6, 248, 339, 813, 819, 1041
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	464, 735
TaaI	ACNGT	4 cut(s)	82, 94, 130, 1058
TaqI	TCGA	1 cut(s)	906
TasI	AATT	1 cut(s)	432
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	7 cut(s)	44, 320, 355, 386, 445, 548, 973
Tru1I	TTAA	6 cut(s)	111, 242, 297, 600, 744, 963
Tru9I	TTAA	6 cut(s)	111, 242, 297, 600, 744, 963
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	2 cut(s)	539, 1110
TspDTI	ATGAA	3 cut(s)	291, 392, 924
TspGWI	ACGGA	7 cut(s)	93, 165, 321, 367, 700, 877, 1003
TspRI	CASTG	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	1099
VpaK11BI	GGWCC	2 cut(s)	281, 461
VspI	ATTAAT	1 cut(s)	963
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.