Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017523.1

Orthogroup ID

OG0012493

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 4096

Gene Structure 4095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017523.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1030 bp

atggcggaacctaattgcttccttaaagcgcatgaggggcctgcatatgacgttaaattttatggccacgggggcgaggagtctatgctgctaagctgcggggacgatggtcgaattcgaggatggaggtggaaggattgtatacagtccgacgtgcctattcatttgcaaggagaccaagtgaagccagtacttgacatggtgaatcctcaacataagggtccttggggggctttatctccaattcctgaaaacaatgctcttgctgttgataatcaaggagggtccattttctctgctgctggcgattcctgtgtctattgctgggatgtggaaacaggtcaagtcaaaatggtttttaaggggcactcagattacttgcattccatagtcgcccgaaactctacaaatcagatcataactggttcagaggatgggacggcacgtatatgggattgcaaaagtggaaagtcagttcaagtgattgagccattaaagaataataaattgaaagggtcgtgcgtcagttgcattgctcttgatgcaagtgaaagctggttggcttgtggtactggtcggagtttatcagtttggaaccttcctgcatctgaatgcatttcaatgacttcaactcgtgcatctgtacaggatgtagtatttgatgaaaatcaaatattagcagttggagcagagcctctacttagccgttttgacataaatggggtgattctttcacaaatgcaatgtgcccctcagtcagccttttctgtctcattacacacatctggggttacagcaataggaggttatggaggagttgtggatgttatttcccaatcgatttcccctctccttctttttcactcttccaacaaatcaacatcatcgtccacagtcatggcggcacctgaaggttcacagtttgatacacgtcagttcgacactaagatgaatgagttgcttgcaactgatggacaagatttctttacatcatacgatgaagtttacgacagttttgattccatgggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C WD40

Protein Analysis

343

Amino Acids

36.94

Weight (kDa)

4.74

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19430
fragaria_vesca	FvH4_1g07921
malus_domestica	MD02G1082800.v1.1 MD15G1210900.v1.1
prunus_persica	Prupe.7G205900_v2.0.a1 Prupe.7G205900_v2.0.a1
pyrus_communis	pycom02g06570 pycom15g18680
rosa_chinensis	RchiOBHm_Chr2g0093801
rosa_multiflora	Rmu_co8487551.1_g000001 Rmu_sc0017523.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147790
rosa_rugosa	Rorug05G0508300
rosa_samantha	Rh2AG086400 Rh2BG086700 Rh2CG089100 Rh2DG084900
rosa_wichuraiana	Rw5G017310 Rw6G040860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	904
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	3 cut(s)	5, 99, 902
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	56, 114
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	3 cut(s)	192, 571, 645
AflIII	ACRYGT	1 cut(s)	929
AgsI	TTSAA	4 cut(s)	479, 511, 621, 630
AjiI	CACGTC	2 cut(s)	154, 932
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	2 cut(s)	96, 555
AluI	AGCT	2 cut(s)	96, 555
Alw26I	GTCTC	2 cut(s)	168, 775
AoxI	GGCC	2 cut(s)	38, 64
ApeKI	GCWGC	3 cut(s)	88, 96, 299
ApoI	RAATTY	2 cut(s)	56, 114
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	38, 221, 285
AsuHPI	GGTGA	2 cut(s)	214, 736
AvaII	GGWCC	2 cut(s)	221, 285
BaeGI	GKGCMC	2 cut(s)	369, 751
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	904
BauI	CACGAG	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	75, 83, 286
BccI	CCATC	4 cut(s)	101, 117, 428, 965
BceAI	ACGGC	2 cut(s)	456, 690
BcoDI	GTCTC	2 cut(s)	168, 775
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	4 cut(s)	89, 97, 300, 903
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	4 cut(s)	90, 98, 301, 904
BmcAI	AGTACT	1 cut(s)	192
Bme18I	GGWCC	2 cut(s)	221, 285
BmgBI	CACGTC	2 cut(s)	154, 932
BmgT120I	GGNCC	3 cut(s)	38, 221, 285
BmiI	GGNNCC	6 cut(s)	9, 39, 222, 286, 596, 906
BmsI	GCATC	3 cut(s)	532, 614, 647
BoxI	GACNNNNGTC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	839
BsaAI	YACGTR	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	67, 224, 1023
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 804, 834
Bse1I	ACTGG	3 cut(s)	188, 427, 577
Bse3DI	GCAATG	2 cut(s)	531, 749
Bse8I	GATNNNNATC	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	839
BseDI	CCNNGG	3 cut(s)	67, 224, 1023
BseGI	GGATG	5 cut(s)	128, 334, 439, 655, 829
BseJI	GATNNNNATC	1 cut(s)	666
BseMI	GCAATG	2 cut(s)	531, 749
BseMII	CTCAG	2 cut(s)	384, 767
BseNI	ACTGG	3 cut(s)	188, 427, 577
BseRI	GAGGAG	2 cut(s)	92, 828
BseSI	GKGCMC	2 cut(s)	369, 751
BseXI	GCAGC	3 cut(s)	75, 83, 286
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	2 cut(s)	40, 66
BshNI	GGYRCC	1 cut(s)	904
BshVI	ATCGAT	1 cut(s)	839
BslFI	GGGAC	2 cut(s)	116, 451
BsmAI	GTCTC	2 cut(s)	168, 775
BsmFI	GGGAC	2 cut(s)	116, 451
BsmI	GAATGC	2 cut(s)	382, 617
BsnI	GGCC	2 cut(s)	40, 66
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	369, 751
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	1 cut(s)	414
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	1023
BspACI	CCGC	3 cut(s)	5, 99, 902
BspANI	GGCC	2 cut(s)	40, 66
BspCNI	CTCAG	2 cut(s)	383, 766
BspDI	ATCGAT	1 cut(s)	839
BspLI	GGNNCC	6 cut(s)	9, 39, 222, 286, 596, 906
BspT107I	GGYRCC	1 cut(s)	904
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	531, 749
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	188, 427, 577
BssECI	CCNNGG	3 cut(s)	67, 224, 1023
BssMI	GATC	1 cut(s)	414
BssNAI	GTATAC	1 cut(s)	143
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	2 cut(s)	224, 1023
Bst1107I	GTATAC	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	147, 895, 921, 1013
Bst6I	CTCTTC	1 cut(s)	871
BstAUI	TGTACA	1 cut(s)	643
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	42, 304, 963
BstDEI	CTNAG	5 cut(s)	92, 370, 701, 753, 945
BstDSI	CCRYGG	2 cut(s)	67, 1023
BstF5I	GGATG	5 cut(s)	128, 334, 439, 655, 829
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	2 cut(s)	168, 775
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 72, 528, 542, 686
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSLI	GKGCMC	2 cut(s)	369, 751
BstV1I	GCAGC	3 cut(s)	75, 83, 286
BstXI	CCANNNNNNTGG	1 cut(s)	898
BstZ17I	GTATAC	1 cut(s)	143
Bsu15I	ATCGAT	1 cut(s)	839
BsuRI	GGCC	2 cut(s)	40, 66
BsuTUI	ATCGAT	1 cut(s)	839
BtgI	CCRYGG	2 cut(s)	67, 1023
BtrI	CACGTC	2 cut(s)	154, 932
BtsCI	GGATG	5 cut(s)	128, 334, 439, 655, 829
Cac8I	GCNNGC	3 cut(s)	42, 304, 963
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	38, 221, 285
ClaI	ATCGAT	1 cut(s)	839
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	191, 570, 644
CviAII	CATG	4 cut(s)	32, 199, 898, 1024
CviQI	GTAC	3 cut(s)	191, 570, 644
DdeI	CTNAG	5 cut(s)	92, 370, 701, 753, 945
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	871
EarI	CTCTTC	1 cut(s)	871
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	224, 1023
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	221, 285
Eco57I	CTGAAG	1 cut(s)	930
EcoO109I	RGGNCCY	2 cut(s)	38, 221
EcoRI	GAATTC	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	224, 1023
EcoT22I	ATGCAT	1 cut(s)	617
ErhI	CCWWGG	2 cut(s)	224, 1023
FaeI	CATG	4 cut(s)	35, 202, 901, 1027
FaqI	GGGAC	2 cut(s)	116, 451
FatI	CATG	4 cut(s)	31, 198, 897, 1023
FauI	CCCGC	1 cut(s)	92
FauNDI	CATATG	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	89, 97, 300, 903
FokI	GGATG	5 cut(s)	135, 341, 446, 662, 836
Fsp4HI	GCNGC	4 cut(s)	89, 97, 300, 903
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	89, 97, 300, 903
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	40, 66
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	35, 202, 901, 1027
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	5 cut(s)	80, 205, 308, 727, 1019
HphI	GGTGA	2 cut(s)	214, 736
Hpy166II	GTNNAC	4 cut(s)	143, 891, 917, 1006
Hpy188I	TCNGA	6 cut(s)	151, 373, 414, 430, 579, 610
Hpy188III	TCNNGA	2 cut(s)	248, 539
Hpy8I	GTNNAC	4 cut(s)	143, 891, 917, 1006
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	4 cut(s)	127, 608, 863, 905
HpyCH4III	ACNGT	4 cut(s)	147, 895, 921, 1013
HpyCH4IV	ACGT	4 cut(s)	51, 153, 445, 931
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 72, 528, 542, 686
HpyF3I	CTNAG	5 cut(s)	92, 370, 701, 753, 945
HpySE526I	ACGT	4 cut(s)	51, 153, 445, 931
Hsp92II	CATG	4 cut(s)	35, 202, 901, 1027
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	686
Lsp1109I	GCAGC	3 cut(s)	75, 83, 286
LweI	GCATC	3 cut(s)	532, 614, 647
MaeII	ACGT	4 cut(s)	51, 153, 445, 931
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	369, 751
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	5 cut(s)	13, 56, 114, 243, 506
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	4 cut(s)	174, 557, 664, 894
Mox20I	TGGCCA	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	4 cut(s)	24, 54, 360, 494
MslI	CAYNNNNRTG	5 cut(s)	448, 610, 620, 896, 947
Msp20I	TGGCCA	1 cut(s)	66
Mva1269I	GAATGC	2 cut(s)	382, 617
MwoI	GCNNNNNNNGC	5 cut(s)	37, 72, 528, 542, 686
NcoI	CCATGG	1 cut(s)	1023
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	4 cut(s)	35, 202, 901, 1027
NlaIV	GGNNCC	6 cut(s)	9, 39, 222, 286, 596, 906
NsiI	ATGCAT	1 cut(s)	617
PctI	GAATGC	2 cut(s)	382, 617
PfeI	GAWTC	4 cut(s)	205, 308, 727, 1019
PkrI	GCNGC	4 cut(s)	90, 98, 301, 904
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	446
PpuMI	RGGWCCY	1 cut(s)	221
PshAI	GACNNNNGTC	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	6 cut(s)	9, 39, 222, 286, 596, 906
PspPI	GGNCC	3 cut(s)	38, 221, 285
PspPPI	RGGWCCY	1 cut(s)	221
RsaI	GTAC	3 cut(s)	192, 571, 645
RsaNI	GTAC	3 cut(s)	191, 570, 644
RseI	CAYNNNNRTG	5 cut(s)	448, 610, 620, 896, 947
SaqAI	TTAA	4 cut(s)	24, 54, 360, 494
SatI	GCNGC	4 cut(s)	89, 97, 300, 903
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	3 cut(s)	38, 221, 285
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	369, 751
SfaNI	GCATC	3 cut(s)	532, 614, 647
SinI	GGWCC	2 cut(s)	221, 285
SmiMI	CAYNNNNRTG	5 cut(s)	448, 610, 620, 896, 947
Sse9I	AATT	5 cut(s)	13, 56, 114, 243, 506
SsiI	CCGC	3 cut(s)	5, 99, 902
SspI	AATATT	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	224, 1023
TaaI	ACNGT	4 cut(s)	147, 895, 921, 1013
TaiI	ACGT	4 cut(s)	54, 156, 448, 934
TaqI	TCGA	4 cut(s)	112, 118, 839, 939
TasI	AATT	5 cut(s)	13, 56, 114, 243, 506
TatI	WGTACW	2 cut(s)	190, 643
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	4 cut(s)	205, 308, 727, 1019
Tru1I	TTAA	4 cut(s)	24, 54, 360, 494
Tru9I	TTAA	4 cut(s)	24, 54, 360, 494
TseI	GCWGC	3 cut(s)	88, 96, 299
TspDTI	ATGAA	4 cut(s)	152, 678, 965, 1014
VpaK11BI	GGWCC	2 cut(s)	221, 285
XapI	RAATTY	2 cut(s)	56, 114
XmiI	GTMKAC	1 cut(s)	142
ZrmI	AGTACT	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.