Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010969

Physical Location & Seq

Genomic Coordinates Reverse (-)

8887116 .. 8888305

Gene Structure 1190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20616.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGAGCTGTGAGCATGAACTACTCAAAACAAGAAGAGGAAAGTCCCGCGAGGTTAGTTCACGTTTTCTCTCCTCTCCGTCTGCATCTTCTTCTCCTAACCGCAGAAACTCCACTTCTAGTTCATCTACCAAGAGAGATGATCAGAACAACAACGGTCTGAAAGTTCATCTTGGCCTGAAAAAGCATGATAGGATGTCAGATGGAACACGGGTTTGTTTCGGGTTACCAAACCAAAGTAGCTTAGAATTTGACACAAGAAAATCCCAAGTAAAGTTGGTTCTGCAAGAGAAAATCAAACTGCAGAAGAAAAACCTGGAGATGAAGATCAATTATGTGCTTCTTTCTCAAGTTAAAGCATCTTGGGAGGACATGGAAATACAACAACTATCATCTCTGTCCATGGCCAGAGATTCCCTGCATTCTGTTCTTTCCATGCTTCCCCTCAAAGAAGGTGCAAAGATGGAGGGTATTGTTCCACTTGCTTCCCTACTAGCGGAAGTGGCTGCACAAGAGAAGCTGATGCAACCTCATGACTTTTTGAGAATGATCTCCGAGTTAGAGATGCAGGAGAGGAGCTTGAAGTGCTGCTTCTTGATTCAACACAAACAGACTTTCGATACAAATCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

211

Amino Acids

23.99

Weight (kDa)

9.49

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	92 - 155	6.6e-13	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20616 AT2G20815 AT2G20815 AT2G20815 AT2G20815
malus_domestica	MD09G1092900.v1.1 MD17G1083000.v1.1
prunus_persica	Prupe.3G232200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0161991
rosa_laevigata	RLG00000021313
rosa_multiflora	Rmu_co8420029.1_g000001 Rmu_sc0008428.1_g000003 Rmu_sc0038528.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088420
rosa_rugosa	Rorug02G0493800
rosa_samantha	Rh2AG559700 Rh2BG573100 Rh2CG543300 Rh2DG582900
rosa_wichuraiana	Rw2G046320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	49, 103, 497
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	583, 602
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	4 cut(s)	9, 243, 520, 579
AluI	AGCT	4 cut(s)	9, 243, 520, 579
AoxI	GGCC	2 cut(s)	175, 405
ApeKI	GCWGC	2 cut(s)	506, 588
ApoI	RAATTY	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	493, 575
BccI	CCATC	2 cut(s)	197, 457
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	2 cut(s)	120, 494
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	507, 589
BlsI	GCNGC	2 cut(s)	508, 590
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	4 cut(s)	95, 368, 513, 555
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	333
BsaBI	GATNNNNATC	2 cut(s)	326, 624
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse8I	GATNNNNATC	2 cut(s)	326, 624
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	201
BseJI	GATNNNNATC	2 cut(s)	326, 624
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	64, 589
BseXI	GCAGC	2 cut(s)	493, 575
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	177, 407
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	177, 407
Bsp143I	GATC	3 cut(s)	142, 327, 549
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	3 cut(s)	49, 103, 497
BspANI	GGCC	2 cut(s)	177, 407
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	142, 327, 549
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	3 cut(s)	145, 330, 552
BstMBI	GATC	3 cut(s)	142, 327, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 585
BstNI	CCWGG	1 cut(s)	317
BstPI	GGTNACC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	493, 575
BsuRI	GGCC	2 cut(s)	177, 407
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	532
CviAII	CATG	6 cut(s)	17, 188, 373, 403, 436, 533
CviJI	RGCY	7 cut(s)	9, 177, 243, 407, 506, 520, 579
CviKI_1	RGCY	7 cut(s)	9, 177, 243, 407, 506, 520, 579
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	144, 329, 551
DpnII	GATC	3 cut(s)	142, 327, 549
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	6 cut(s)	20, 191, 376, 406, 439, 536
FaiI	YATR	7 cut(s)	18, 189, 336, 374, 404, 437, 534
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 575, 607
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	6 cut(s)	16, 187, 372, 402, 435, 532
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	507, 589
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	507, 589
FspBI	CTAG	2 cut(s)	120, 494
GluI	GCNGC	2 cut(s)	507, 589
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	177, 407
Hin1II	CATG	6 cut(s)	20, 191, 376, 406, 439, 536
HinfI	GANTC	2 cut(s)	413, 598
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	4 cut(s)	147, 162, 202, 556
Hpy188III	TCNNGA	2 cut(s)	533, 595
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	8 cut(s)	86, 286, 304, 421, 458, 509, 526, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 585
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	6 cut(s)	20, 191, 376, 406, 439, 536
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	142, 327, 549
LmnI	GCTCC	1 cut(s)	576
LpnPI	CCDG	6 cut(s)	191, 302, 329, 421, 431, 554
Lsp1109I	GCAGC	2 cut(s)	493, 575
LweI	GCATC	4 cut(s)	95, 368, 513, 555
MaeI	CTAG	2 cut(s)	120, 494
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	144, 329, 551
MboI	GATC	3 cut(s)	142, 327, 549
MboII	GAAGA	7 cut(s)	16, 48, 81, 84, 319, 337, 620
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	2 cut(s)	248, 331
MluNI	TGGCCA	1 cut(s)	407
MnlI	CCTC	8 cut(s)	32, 46, 85, 361, 455, 460, 540, 567
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	354, 634
Msp20I	TGGCCA	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	503, 585
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	142, 327, 549
NlaIII	CATG	6 cut(s)	20, 191, 376, 406, 439, 536
PagI	TCATGA	1 cut(s)	532
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	413, 598
PkrI	GCNGC	2 cut(s)	508, 590
Psp6I	CCWGG	1 cut(s)	315
PspEI	GGTNACC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PstI	CTGCAG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	354, 634
SatI	GCNGC	2 cut(s)	507, 589
Sau3AI	GATC	3 cut(s)	142, 327, 549
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	9 cut(s)	11, 57, 67, 245, 318, 457, 522, 532, 581
SfaNI	GCATC	4 cut(s)	95, 368, 513, 555
SfcI	CTRYAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	248, 331
SsiI	CCGC	3 cut(s)	49, 103, 497
SspMI	CTAG	2 cut(s)	120, 494
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	618
TasI	AATT	2 cut(s)	248, 331
TfiI	GAWTC	2 cut(s)	413, 598
Tru1I	TTAA	2 cut(s)	354, 634
Tru9I	TTAA	2 cut(s)	354, 634
TseI	GCWGC	2 cut(s)	506, 588
TspDTI	ATGAA	5 cut(s)	17, 33, 114, 158, 338
TspGWI	ACGGA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	2 cut(s)	120, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.