Rmu_sc0008428.1_g000003

QWRF motif-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008428.1
Physical Location & Seq
Forward (+)
7254 .. 9507
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008428.1_g000003.1.cds

Sequence Viewer

Length: 1599 bp
atggatcaccctcacaaacccagaaagcccaaatcccgggaagtaagctcccgcttcctatcttcccccgcacccgaaccctccacactcccatctccaagccaccctctctcgccggcccggagaaaactcggttcgccgatatccgatgcccgaaaacccaaaactcatctcgacgattcaagctccatccgaggaggaggactatggccatcttcaacaaccaagaacttcgactctctagcagtccatctcggaatcgagagactcaaagatagtatcgaccgtaaaaactcgacctccgtcacaagccggagagaagcgagtgtgtttaatgagaaagacaacgccaaagagaaccatagaccggttctcggagggtcggcgaggtacaccgggaaattcaaattttccgggaaatcgtcgccgtcgccgtcgtcgtcttcgacttcagtgtcttcgaataaactatcggcggtggtagttccggggagattttccgttgacggaagtggtctgtatcagaactcaactcggcgaagtttcgatagtttcgccgatactctcgagtcgggatcggagtgcagcgacgccggttcaggcaggaatattaatatcgggtcgccgagtttcggggctcagagctcgacggcgagttcgagaaagtcgggggtggaggtttcgtctaagtacatgagtgatattcagacgaggcatcatcggagatggacgtcggattctaatctccggaatccgatttcggcagagagctctccgaaaatgaacaagtttaacctgaaaaatgtgatcaagagggctaattcgttgaccgggtcaaagttcgggacgacgcagtgggcattgtcgccgggaaggagcgtggcgcagccggggtcggcggagagtttggggaagtcgacgtcgttttcgagcttgaagcctccgacgagtccttcgaaaagtaagggagtggagaagttgctcaatatggggttcgacttgttcaagagtaaaaaatcttcatcatctactaggtcactggtgaggtctaattccgggtatggtgtgaccgataccggtcatcaactccggatgcttcagaacagattgatgcaatggcggtacgcaaatgcaagagctgaaactgtgaatggcaatgttgctgatcaagcacagtttgagccattggaagcttggggagatatggaaaggcaacatatgggagcagtttctatgttgaaagagagcttacattctgttgtgtgcagagtgcctctcactgaaggtgcaaaggtggatactcaatcagccgccatcaatcttcgaaatgcttcagattactcagcctccattaagttgatattggctacatttgccccctcggctgagcagactagtgtgttgctctcagaattagcagaggttgttgcgcaagaaaagttgctttctgatgagtgtcttgagctctgtagaaccatatcagaactagagatggaagagaggggattgaagtgtggtattattcaattggaatcatggaaacaagagcaaattcagctgcagcagcaggaatcaagacaacaagatatcatgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

57.95

Weight (kDa)

9.68

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AatII GACGTC 2 cut(s) 734, 923
Acc16I TGCGCA 1 cut(s) 1431
AccI GTMKAC 1 cut(s) 917
AccIII TCCGGA 2 cut(s) 747, 1089
AciI CCGC 6 cut(s) 52, 69, 476, 899, 1120, 1311
AclWI GGATC 2 cut(s) 12, 583
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 3 cut(s) 401, 407, 1551
AcuI CTGAAG 4 cut(s) 435, 1082, 1302, 1317
AcyI GRCGYC 3 cut(s) 591, 731, 920
AfaI GTAC 3 cut(s) 392, 692, 1124
AfiI CCNNNNNNNGG 4 cut(s) 36, 367, 374, 632
AgeI ACCGGT 2 cut(s) 367, 1076
AgsI TTSAA 8 cut(s) 183, 219, 406, 937, 1006, 1240, 1510, 1526
AhlI ACTAGT 1 cut(s) 1394
Alw21I GWGCWC 3 cut(s) 647, 773, 1467
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 12, 583
Ama87I CYCGRG 2 cut(s) 36, 566
Aor13HI TCCGGA 2 cut(s) 747, 1089
AoxI GGCC 2 cut(s) 117, 209
ApeKI GCWGC 5 cut(s) 585, 886, 1558, 1561, 1564
ApoI RAATTY 3 cut(s) 401, 407, 1551
ArsI GACNNNNNNTTYG 6 cut(s) 640, 672, 910, 937, 942, 969
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 2 cut(s) 367, 1076
Asp700I GAANNNNTTC 1 cut(s) 1330
AspLEI GCGC 2 cut(s) 886, 1432
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 1054
AsuII TTCGAA 3 cut(s) 461, 956, 1324
AvaI CYCGRG 2 cut(s) 36, 566
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 4 cut(s) 640, 647, 773, 1467
BarI GAAGNNNNNNTAC 2 cut(s) 1003, 1035
BbsI GAAGAC 2 cut(s) 435, 450
Bbv12I GWGCWC 3 cut(s) 647, 773, 1467
BbvI GCAGC 5 cut(s) 597, 898, 1545, 1573, 1576
BccI CCATC 7 cut(s) 100, 197, 220, 258, 720, 1322, 1486
BceAI ACGGC 3 cut(s) 412, 418, 666
BciVI GTATCC 1 cut(s) 1291
BclI TGATCA 2 cut(s) 807, 1165
BcoDI GTCTC 1 cut(s) 259
BcuI ACTAGT 1 cut(s) 1394
BfaI CTAG 4 cut(s) 242, 1032, 1395, 1487
BfmI CTRYAG 2 cut(s) 1468, 1559
BfuI GTATCC 1 cut(s) 1291
BglI GCCNNNNNGGC 1 cut(s) 1382
BisI GCNGC 6 cut(s) 586, 887, 1311, 1559, 1562, 1565
BlpI GCTNAGC 1 cut(s) 1386
BlsI GCNGC 6 cut(s) 587, 888, 1312, 1560, 1563, 1566
BmeT110I CYCGRG 2 cut(s) 36, 566
BmgT120I GGNCC 1 cut(s) 118
BmsI GCATC 4 cut(s) 139, 724, 1083, 1101
BoxI GACNNNNGTC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 435, 450
BplI GAGNNNNNCTC 2 cut(s) 1260, 1292
Bpu1102I GCTNAGC 1 cut(s) 1386
Bpu14I TTCGAA 3 cut(s) 461, 956, 1324
BpuEI CTTGAG 1 cut(s) 1481
BsaBI GATNNNNATC 1 cut(s) 741
BsaHI GRCGYC 3 cut(s) 591, 731, 920
BsaJI CCNNGG 5 cut(s) 36, 193, 488, 890, 1380
BsaWI WCCGGW 4 cut(s) 367, 747, 1076, 1089
BsaXI ACNNNNNCTCC 6 cut(s) 284, 314, 668, 698, 1331, 1361
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 367, 374, 632
Bse118I RCCGGY 4 cut(s) 115, 367, 593, 1076
Bse1I ACTGG 1 cut(s) 1044
Bse3DI GCAATG 2 cut(s) 1121, 1162
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 2 cut(s) 747, 1089
BseDI CCNNGG 5 cut(s) 36, 193, 488, 890, 1380
BseGI GGATG 2 cut(s) 189, 1098
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 4 cut(s) 36, 367, 374, 632
BseMI GCAATG 2 cut(s) 1121, 1162
BseMII CTCAG 4 cut(s) 653, 1356, 1377, 1422
BseNI ACTGG 1 cut(s) 1044
BseRI GAGGAG 2 cut(s) 210, 213
BseXI GCAGC 5 cut(s) 597, 898, 1545, 1573, 1576
BsgI GTGCAG 2 cut(s) 604, 1285
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 119, 211
BshTI ACCGGT 2 cut(s) 367, 1076
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 3 cut(s) 647, 773, 1467
BsiHKCI CYCGRG 2 cut(s) 36, 566
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 4 cut(s) 36, 367, 374, 632
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 859
BsnI GGCC 2 cut(s) 119, 211
BsoBI CYCGRG 2 cut(s) 36, 566
Bsp119I TTCGAA 3 cut(s) 461, 956, 1324
Bsp1286I GDGCHC 4 cut(s) 640, 647, 773, 1467
Bsp13I TCCGGA 2 cut(s) 747, 1089
Bsp143I GATC 4 cut(s) 4, 575, 807, 1165
Bsp1720I GCTNAGC 1 cut(s) 1386
BspACI CCGC 6 cut(s) 52, 69, 476, 899, 1120, 1311
BspANI GGCC 2 cut(s) 119, 211
BspCNI CTCAG 4 cut(s) 652, 1355, 1378, 1421
BspEI TCCGGA 2 cut(s) 747, 1089
BspMAI CTGCAG 1 cut(s) 1563
BspPI GGATC 2 cut(s) 12, 583
BspT104I TTCGAA 3 cut(s) 461, 956, 1324
BsrDI GCAATG 2 cut(s) 1121, 1162
BsrFI RCCGGY 4 cut(s) 115, 367, 593, 1076
BsrI ACTGG 1 cut(s) 1044
BssAI RCCGGY 4 cut(s) 115, 367, 593, 1076
BssECI CCNNGG 5 cut(s) 36, 193, 488, 890, 1380
BssMI GATC 4 cut(s) 4, 575, 807, 1165
BssNI GRCGYC 3 cut(s) 591, 731, 920
Bst4CI ACNGT 3 cut(s) 287, 1147, 1176
Bst6I CTCTTC 1 cut(s) 1491
BstACI GRCGYC 3 cut(s) 591, 731, 920
BstBI TTCGAA 3 cut(s) 461, 956, 1324
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 5 cut(s) 639, 687, 1342, 1386, 1408
BstF5I GGATG 2 cut(s) 189, 1098
BstHHI GCGC 2 cut(s) 886, 1432
BstKTI GATC 4 cut(s) 7, 578, 810, 1168
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 4 cut(s) 4, 575, 807, 1165
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 5 cut(s) 1169, 1373, 1382, 1555, 1564
BstPAI GACNNNNGTC 1 cut(s) 302
BstSFI CTRYAG 2 cut(s) 1468, 1559
BstV1I GCAGC 5 cut(s) 597, 898, 1545, 1573, 1576
BstV2I GAAGAC 2 cut(s) 435, 450
BsuI GTATCC 1 cut(s) 1291
BsuRI GGCC 2 cut(s) 119, 211
BtsCI GGATG 2 cut(s) 189, 1098
BtsI GCAGTG 1 cut(s) 860
BtsIMutI CAGTG 4 cut(s) 459, 860, 1037, 1278
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 2 cut(s) 886, 1432
Cfr10I RCCGGY 4 cut(s) 115, 367, 593, 1076
Cfr13I GGNCC 1 cut(s) 118
Cfr9I CCCGGG 1 cut(s) 36
CseI GACGC 2 cut(s) 599, 859
Csp6I GTAC 3 cut(s) 391, 691, 1123
CspAI ACCGGT 2 cut(s) 367, 1076
CviAII CATG 4 cut(s) 694, 1536, 1591, 1596
CviQI GTAC 3 cut(s) 391, 691, 1123
DdeI CTNAG 5 cut(s) 639, 687, 1342, 1386, 1408
DpnI GATC 4 cut(s) 6, 577, 809, 1167
DpnII GATC 4 cut(s) 4, 575, 807, 1165
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 1491
EarI CTCTTC 1 cut(s) 1491
EciI GGCGGA 1 cut(s) 914
Ecl136II GAGCTC 3 cut(s) 645, 771, 1465
Eco24I GRGCYC 4 cut(s) 640, 647, 773, 1467
Eco32I GATATC 2 cut(s) 144, 1588
Eco53kI GAGCTC 3 cut(s) 645, 771, 1465
Eco57I CTGAAG 4 cut(s) 435, 1082, 1302, 1317
Eco88I CYCGRG 2 cut(s) 36, 566
EcoICRI GAGCTC 3 cut(s) 645, 771, 1465
EcoRV GATATC 2 cut(s) 144, 1588
EcoT38I GRGCYC 4 cut(s) 640, 647, 773, 1467
FaeI CATG 4 cut(s) 697, 1539, 1594, 1599
FaqI GGGAC 1 cut(s) 859
FatI CATG 4 cut(s) 693, 1535, 1590, 1595
FauI CCCGC 2 cut(s) 59, 76
FauNDI CATATG 1 cut(s) 1218
FbaI TGATCA 2 cut(s) 807, 1165
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 6 cut(s) 586, 887, 1311, 1559, 1562, 1565
FokI GGATG 2 cut(s) 176, 1105
FriOI GRGCYC 4 cut(s) 640, 647, 773, 1467
Fsp4HI GCNGC 6 cut(s) 586, 887, 1311, 1559, 1562, 1565
FspBI CTAG 4 cut(s) 242, 1032, 1395, 1487
FspI TGCGCA 1 cut(s) 1431
GlaI GCGC 2 cut(s) 885, 1431
GluI GCNGC 6 cut(s) 586, 887, 1311, 1559, 1562, 1565
HaeIII GGCC 2 cut(s) 119, 211
HgaI GACGC 2 cut(s) 599, 859
HhaI GCGC 2 cut(s) 886, 1432
Hin1I GRCGYC 3 cut(s) 591, 731, 920
Hin1II CATG 4 cut(s) 697, 1539, 1594, 1599
Hin6I GCGC 2 cut(s) 884, 1430
HinP1I GCGC 2 cut(s) 884, 1430
HincII GTYRAC 3 cut(s) 505, 828, 918
HindII GTYRAC 3 cut(s) 505, 828, 918
HindIII AAGCTT 1 cut(s) 1191
HphI GGTGA 1 cut(s) 1054
Hpy166II GTNNAC 4 cut(s) 393, 505, 828, 918
Hpy8I GTNNAC 4 cut(s) 393, 505, 828, 918
HpyAV CCTTC 3 cut(s) 867, 963, 1277
HpyCH4III ACNGT 3 cut(s) 287, 1147, 1176
HpyCH4IV ACGT 2 cut(s) 731, 920
HpyCH4V TGCA 6 cut(s) 585, 1114, 1133, 1266, 1289, 1561
HpyF10VI GCNNNNNNNGC 5 cut(s) 1169, 1373, 1382, 1555, 1564
HpyF3I CTNAG 5 cut(s) 639, 687, 1342, 1386, 1408
HpySE526I ACGT 2 cut(s) 731, 920
Hsp92I GRCGYC 3 cut(s) 591, 731, 920
Hsp92II CATG 4 cut(s) 697, 1539, 1594, 1599
HspAI GCGC 2 cut(s) 884, 1430
Kpn2I TCCGGA 2 cut(s) 747, 1089
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
Ksp22I TGATCA 2 cut(s) 807, 1165
Kzo9I GATC 4 cut(s) 4, 575, 807, 1165
LmnI GCTCC 4 cut(s) 53, 191, 876, 1223
Lsp1109I GCAGC 5 cut(s) 597, 898, 1545, 1573, 1576
LweI GCATC 4 cut(s) 139, 724, 1083, 1101
MaeI CTAG 4 cut(s) 242, 1032, 1395, 1487
MaeII ACGT 2 cut(s) 731, 920
MaeIII GTNAC 3 cut(s) 304, 1035, 1066
MalI GATC 4 cut(s) 6, 577, 809, 1167
MboI GATC 4 cut(s) 4, 575, 807, 1165
MboII GAAGA 7 cut(s) 54, 207, 435, 450, 1011, 1313, 1508
MfeI CAATTG 1 cut(s) 1526
MhlI GDGCHC 4 cut(s) 640, 647, 773, 1467
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 7 cut(s) 401, 407, 820, 1051, 1412, 1526, 1551
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 4 cut(s) 230, 261, 578, 958
MmeI TCCRAC 2 cut(s) 714, 968
Mox20I TGGCCA 1 cut(s) 211
MroI TCCGGA 2 cut(s) 747, 1089
MroNI GCCGGC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 1330
MscI TGGCCA 1 cut(s) 211
MseI TTAA 4 cut(s) 333, 612, 792, 1353
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 1558
MunI CAATTG 1 cut(s) 1526
MwoI GCNNNNNNNGC 5 cut(s) 1169, 1373, 1382, 1555, 1564
NaeI GCCGGC 1 cut(s) 117
NdeI CATATG 1 cut(s) 1218
NdeII GATC 4 cut(s) 4, 575, 807, 1165
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 4 cut(s) 697, 1539, 1594, 1599
NmeAIII GCCGAG 3 cut(s) 514, 651, 1361
NmuCI GTSAC 3 cut(s) 304, 1035, 1066
NsbI TGCGCA 1 cut(s) 1431
NspV TTCGAA 3 cut(s) 461, 956, 1324
PaeR7I CTCGAG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 6 cut(s) 431, 437, 443, 656, 926, 953
PdiI GCCGGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 1330
PfeI GAWTC 6 cut(s) 179, 258, 737, 751, 1532, 1571
PflFI GACNNNGTC 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 413
PinAI ACCGGT 2 cut(s) 367, 1076
PkrI GCNGC 6 cut(s) 587, 888, 1312, 1560, 1563, 1566
PleI GAGTC 4 cut(s) 230, 261, 577, 957
PpsI GAGTC 4 cut(s) 230, 261, 577, 957
PshAI GACNNNNGTC 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 3 cut(s) 647, 773, 1467
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 1563
PsyI GACNNNGTC 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 1558
RsaI GTAC 3 cut(s) 392, 692, 1124
RsaNI GTAC 3 cut(s) 391, 691, 1123
SacI GAGCTC 3 cut(s) 647, 773, 1467
SalI GTCGAC 1 cut(s) 916
SaqAI TTAA 4 cut(s) 333, 612, 792, 1353
SatI GCNGC 6 cut(s) 586, 887, 1311, 1559, 1562, 1565
Sau3AI GATC 4 cut(s) 4, 575, 807, 1165
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 4 cut(s) 230, 261, 578, 958
SduI GDGCHC 4 cut(s) 640, 647, 773, 1467
SfaNI GCATC 4 cut(s) 139, 724, 1083, 1101
SfcI CTRYAG 2 cut(s) 1468, 1559
Sfr274I CTCGAG 1 cut(s) 566
SfuI TTCGAA 3 cut(s) 461, 956, 1324
SlaI CTCGAG 1 cut(s) 566
SmaI CCCGGG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 566, 1460
SmoI CTYRAG 2 cut(s) 566, 1460
SpeI ACTAGT 1 cut(s) 1394
Sse9I AATT 7 cut(s) 401, 407, 820, 1051, 1412, 1526, 1551
SsiI CCGC 6 cut(s) 52, 69, 476, 899, 1120, 1311
SspI AATATT 1 cut(s) 610
SspMI CTAG 4 cut(s) 242, 1032, 1395, 1487
SstI GAGCTC 3 cut(s) 647, 773, 1467
TaaI ACNGT 3 cut(s) 287, 1147, 1176
TaiI ACGT 2 cut(s) 734, 923
TaqII GACCGA 1 cut(s) 1085
TasI AATT 7 cut(s) 401, 407, 820, 1051, 1412, 1526, 1551
TatI WGTACW 1 cut(s) 690
TauI GCSGC 1 cut(s) 1313
TfiI GAWTC 6 cut(s) 179, 258, 737, 751, 1532, 1571
Tru1I TTAA 4 cut(s) 333, 612, 792, 1353
Tru9I TTAA 4 cut(s) 333, 612, 792, 1353
TscAI CASTG 4 cut(s) 459, 860, 1044, 1285
TseFI GTSAC 3 cut(s) 304, 1035, 1066
TseI GCWGC 5 cut(s) 585, 886, 1558, 1561, 1564
Tsp45I GTSAC 3 cut(s) 304, 1035, 1066
TspDTI ATGAA 2 cut(s) 797, 1011
TspGWI ACGGA 3 cut(s) 292, 490, 522
TspMI CCCGGG 1 cut(s) 36
TspRI CASTG 4 cut(s) 459, 860, 1044, 1285
Tth111I GACNNNGTC 1 cut(s) 832
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 3 cut(s) 401, 407, 1551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1191
XhoI CTCGAG 1 cut(s) 566
XmaI CCCGGG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 917
XmnI GAANNNNTTC 1 cut(s) 1330
XspI CTAG 4 cut(s) 242, 1032, 1395, 1487
ZraI GACGTC 2 cut(s) 732, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.