Rh2CG543300

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010969
Physical Location & Seq
Forward (+)
72172972 .. 72174536
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG543300.1

Sequence Viewer

Length: 1026 bp
ATGAGTGATATTCAGACGAGGCATCATCGGAGATGGACGTCGGATTCTAATCTCCGGAATCCGATTTCGGCAGAGAGCTCTCCGAAAATGAACAAGTTTAACCTGAAAAATGTGATCAAGAGGGCTAATTCGTTGACCGGGTCAAAGTTCGGGACGACGCAGTGGGCATTGTCGCCGGGAAGGAGCGTGGCGCAGCCGGGGTCGGCGGAGAGTTTGGGGAAGTCGACGTCGTTTTCGAGCTTGAAGCCTCCGACGAGTCCTTCAAAAAGTAAGGGAGTGGAGAAGTTGCTCAATATGGGGTTCGACTTGTTCAAGAGTAAAAAATCTTCATCATCTACTAGGTCACTGGTGAGGTCTAATTCCGGGTATGGTGTGACCGATACCGGTCATCAACTCCGGATGCTTCAGAACAGATTGATGCAATGGCGGTACGCAAATGCAAGAGCTGAAACTGTGAATGGCAATGTTGCTGATCAAGCACAGGTCAATTTTTTGAGTGCTTGTAATAGTCTTATGAAGTTGCGGCAATCCGTGCTGCATAAGAAACTGAAGCTTCAGAAAGAAAGGCTCGAAATGAAGCTGAACTTTACACTACATTCTCAATTTGAGCCATTGGAAGCTTGGGGAGATATGGAAAGGCAACATATGGGAGCAGTTTCTATGTTGAAAGAGAGCTTACATTCTGTTGTGTGCAGAGTGCCTCTCACTGAAGGTGCAAAGGTGGATACTCAATCAGCTGCCATCAATCTTCGAAATGCTTCAGATTACTCAGCCTCCATTAAGTTGATATTGGCTACATTTGCCCCCTCGGCTGAGCAGACTAGTGTGTTGCTCTCAGAATTAGCAGAGGTTGTTGCGCAAGAAAAGTTGCTTTCTGATGAGTGTCTTGAGCTCTGTAGAACCATATCAGAACTAGAGATGGAGGAGAGGGGATTGAAGTGTAGTATTATTCAATTGGAATCATGGAAACAAGAGCAAATTCAGCTGCAGCAGCAGGAATCAAGACAACAAGATATCATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

341

Amino Acids

38.15

Weight (kDa)

9.46

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 7 - 291 2.6e-73 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 41, 230
Acc16I TGCGCA 1 cut(s) 858
AccI GTMKAC 1 cut(s) 224
AccIII TCCGGA 2 cut(s) 54, 396
AciI CCGC 3 cut(s) 206, 427, 523
AcsI RAATTY 1 cut(s) 978
AcuI CTGAAG 5 cut(s) 389, 539, 569, 729, 744
AcyI GRCGYC 2 cut(s) 38, 227
AfaI GTAC 1 cut(s) 431
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 6 cut(s) 244, 264, 313, 667, 937, 953
AhlI ACTAGT 1 cut(s) 821
Alw21I GWGCWC 2 cut(s) 80, 894
Aor13HI TCCGGA 2 cut(s) 54, 396
ApeKI GCWGC 6 cut(s) 193, 535, 737, 985, 988, 991
ApoI RAATTY 1 cut(s) 978
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AsiGI ACCGGT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 757
AspLEI GCGC 2 cut(s) 193, 859
AsuC2I CCSGG 4 cut(s) 139, 177, 198, 364
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 751
BanII GRGCYC 2 cut(s) 80, 894
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
Bbv12I GWGCWC 2 cut(s) 80, 894
BbvI GCAGC 6 cut(s) 205, 522, 724, 972, 1000, 1003
BccI CCATC 3 cut(s) 27, 749, 913
BciVI GTATCC 1 cut(s) 718
BclI TGATCA 2 cut(s) 114, 472
BcnI CCSGG 4 cut(s) 139, 177, 198, 364
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 339, 822, 914
BfmI CTRYAG 2 cut(s) 895, 986
BfuI GTATCC 1 cut(s) 718
BglI GCCNNNNNGGC 1 cut(s) 809
BisI GCNGC 7 cut(s) 194, 524, 536, 738, 986, 989, 992
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 7 cut(s) 195, 525, 537, 739, 987, 990, 993
Bme1390I CCNGG 4 cut(s) 139, 177, 198, 364
BmrFI CCNGG 4 cut(s) 139, 177, 198, 364
BmsI GCATC 3 cut(s) 31, 390, 408
BplI GAGNNNNNCTC 2 cut(s) 687, 719
Bpu1102I GCTNAGC 1 cut(s) 813
Bpu14I TTCGAA 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 4 cut(s) 139, 177, 198, 364
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 2 cut(s) 38, 227
BsaJI CCNNGG 2 cut(s) 197, 807
BsaWI WCCGGW 3 cut(s) 54, 383, 396
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 428, 469
Bse8I GATNNNNATC 1 cut(s) 48
BseAI TCCGGA 2 cut(s) 54, 396
BseDI CCNNGG 2 cut(s) 197, 807
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 48
BseMI GCAATG 2 cut(s) 428, 469
BseMII CTCAG 3 cut(s) 783, 804, 849
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 938
BseXI GCAGC 6 cut(s) 205, 522, 724, 972, 1000, 1003
BsgI GTGCAG 1 cut(s) 712
BshTI ACCGGT 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 80, 894
BsiSI CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 80, 894
Bsp13I TCCGGA 2 cut(s) 54, 396
Bsp143I GATC 2 cut(s) 114, 472
Bsp1720I GCTNAGC 1 cut(s) 813
BspACI CCGC 3 cut(s) 206, 427, 523
BspCNI CTCAG 3 cut(s) 782, 805, 848
BspEI TCCGGA 2 cut(s) 54, 396
BspMAI CTGCAG 1 cut(s) 990
BspT104I TTCGAA 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 428, 469
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 197, 807
BssMI GATC 2 cut(s) 114, 472
BssNI GRCGYC 2 cut(s) 38, 227
Bst4CI ACNGT 1 cut(s) 454
BstACI GRCGYC 2 cut(s) 38, 227
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBI TTCGAA 1 cut(s) 751
BstDEI CTNAG 3 cut(s) 769, 813, 835
BstF5I GGATG 1 cut(s) 405
BstHHI GCGC 2 cut(s) 193, 859
BstKTI GATC 2 cut(s) 117, 475
BstMBI GATC 2 cut(s) 114, 472
BstMWI GCNNNNNNNGC 6 cut(s) 476, 532, 800, 809, 982, 991
BstSCI CCNGG 4 cut(s) 137, 175, 196, 362
BstSFI CTRYAG 2 cut(s) 895, 986
BstV1I GCAGC 6 cut(s) 205, 522, 724, 972, 1000, 1003
BsuI GTATCC 1 cut(s) 718
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 3 cut(s) 167, 344, 705
CfoI GCGC 2 cut(s) 193, 859
Cfr10I RCCGGY 1 cut(s) 383
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 430
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 3 cut(s) 963, 1018, 1023
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 769, 813, 835
DpnI GATC 2 cut(s) 116, 474
DpnII GATC 2 cut(s) 114, 472
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 2 cut(s) 78, 892
Eco24I GRGCYC 2 cut(s) 80, 894
Eco32I GATATC 1 cut(s) 1015
Eco53kI GAGCTC 2 cut(s) 78, 892
Eco57I CTGAAG 5 cut(s) 389, 539, 569, 729, 744
EcoICRI GAGCTC 2 cut(s) 78, 892
EcoRV GATATC 1 cut(s) 1015
EcoT38I GRGCYC 2 cut(s) 80, 894
FaeI CATG 3 cut(s) 966, 1021, 1026
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 166
FatI CATG 3 cut(s) 962, 1017, 1022
FauNDI CATATG 1 cut(s) 645
FbaI TGATCA 2 cut(s) 114, 472
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 7 cut(s) 194, 524, 536, 738, 986, 989, 992
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 2 cut(s) 80, 894
Fsp4HI GCNGC 7 cut(s) 194, 524, 536, 738, 986, 989, 992
FspBI CTAG 3 cut(s) 339, 822, 914
FspI TGCGCA 1 cut(s) 858
GlaI GCGC 2 cut(s) 192, 858
GluI GCNGC 7 cut(s) 194, 524, 536, 738, 986, 989, 992
HapII CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
HgaI GACGC 1 cut(s) 166
HhaI GCGC 2 cut(s) 193, 859
Hin1I GRCGYC 2 cut(s) 38, 227
Hin1II CATG 3 cut(s) 966, 1021, 1026
Hin6I GCGC 2 cut(s) 191, 857
HinP1I GCGC 2 cut(s) 191, 857
HincII GTYRAC 2 cut(s) 135, 225
HindII GTYRAC 2 cut(s) 135, 225
HindIII AAGCTT 2 cut(s) 551, 618
HinfI GANTC 5 cut(s) 44, 58, 256, 959, 998
HpaII CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 135, 225
Hpy188III TCNNGA 7 cut(s) 55, 118, 151, 313, 397, 887, 1002
Hpy8I GTNNAC 2 cut(s) 135, 225
Hpy99I CGWCG 5 cut(s) 43, 160, 229, 232, 256
HpyAV CCTTC 3 cut(s) 174, 270, 704
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 2 cut(s) 38, 227
HpyCH4V TGCA 6 cut(s) 421, 440, 538, 693, 716, 988
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 532, 800, 809, 982, 991
HpyF3I CTNAG 3 cut(s) 769, 813, 835
HpySE526I ACGT 2 cut(s) 38, 227
Hsp92I GRCGYC 2 cut(s) 38, 227
Hsp92II CATG 3 cut(s) 966, 1021, 1026
HspAI GCGC 2 cut(s) 191, 857
Kpn2I TCCGGA 2 cut(s) 54, 396
Ksp22I TGATCA 2 cut(s) 114, 472
Kzo9I GATC 2 cut(s) 114, 472
LmnI GCTCC 2 cut(s) 183, 650
Lsp1109I GCAGC 6 cut(s) 205, 522, 724, 972, 1000, 1003
LweI GCATC 3 cut(s) 31, 390, 408
MaeI CTAG 3 cut(s) 339, 822, 914
MaeII ACGT 2 cut(s) 38, 227
MaeIII GTNAC 2 cut(s) 342, 373
MalI GATC 2 cut(s) 116, 474
MboI GATC 2 cut(s) 114, 472
MboII GAAGA 2 cut(s) 318, 740
MfeI CAATTG 1 cut(s) 953
MhlI GDGCHC 2 cut(s) 80, 894
MluCI AATT 7 cut(s) 127, 358, 487, 602, 839, 953, 978
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 21, 275
MroI TCCGGA 2 cut(s) 54, 396
MroXI GAANNNNTTC 1 cut(s) 757
MseI TTAA 2 cut(s) 99, 780
MspA1I CMGCKG 2 cut(s) 737, 985
MspI CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
MspR9I CCNGG 4 cut(s) 139, 177, 198, 364
MunI CAATTG 1 cut(s) 953
MwoI GCNNNNNNNGC 6 cut(s) 476, 532, 800, 809, 982, 991
NciI CCSGG 4 cut(s) 139, 177, 198, 364
NdeI CATATG 1 cut(s) 645
NdeII GATC 2 cut(s) 114, 472
NlaIII CATG 3 cut(s) 966, 1021, 1026
NmeAIII GCCGAG 1 cut(s) 788
NmuCI GTSAC 2 cut(s) 342, 373
NsbI TGCGCA 1 cut(s) 858
NspV TTCGAA 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 757
PfeI GAWTC 4 cut(s) 44, 58, 959, 998
PflFI GACNNNGTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 7 cut(s) 195, 525, 537, 739, 987, 990, 993
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp124BI GAGCTC 2 cut(s) 80, 894
PstI CTGCAG 1 cut(s) 990
PsyI GACNNNGTC 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 737, 985
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SacI GAGCTC 2 cut(s) 80, 894
SalI GTCGAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 99, 780
SatI GCNGC 7 cut(s) 194, 524, 536, 738, 986, 989, 992
Sau3AI GATC 2 cut(s) 114, 472
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 4 cut(s) 139, 177, 198, 364
SduI GDGCHC 2 cut(s) 80, 894
SfaNI GCATC 3 cut(s) 31, 390, 408
SfcI CTRYAG 2 cut(s) 895, 986
SfuI TTCGAA 1 cut(s) 751
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 821
Sse9I AATT 7 cut(s) 127, 358, 487, 602, 839, 953, 978
SsiI CCGC 3 cut(s) 206, 427, 523
SspMI CTAG 3 cut(s) 339, 822, 914
SstI GAGCTC 2 cut(s) 80, 894
StyD4I CCNGG 4 cut(s) 137, 175, 196, 362
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 2 cut(s) 41, 230
TaqI TCGA 5 cut(s) 224, 236, 303, 570, 751
TaqII GACCGA 1 cut(s) 392
TasI AATT 7 cut(s) 127, 358, 487, 602, 839, 953, 978
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 44, 58, 959, 998
Tru1I TTAA 2 cut(s) 99, 780
Tru9I TTAA 2 cut(s) 99, 780
TscAI CASTG 3 cut(s) 167, 351, 712
TseFI GTSAC 2 cut(s) 342, 373
TseI GCWGC 6 cut(s) 193, 535, 737, 985, 988, 991
Tsp45I GTSAC 2 cut(s) 342, 373
TspDTI ATGAA 4 cut(s) 104, 318, 530, 590
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 3 cut(s) 167, 351, 712
Tth111I GACNNNGTC 1 cut(s) 139
XapI RAATTY 1 cut(s) 978
XcmI CCANNNNNNNNNTGG 1 cut(s) 618
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 757
XspI CTAG 3 cut(s) 339, 822, 914
ZraI GACGTC 2 cut(s) 39, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.