QWRF motif-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20616 AT2G20815 AT2G20815 AT2G20815 AT2G20815 |
| malus_domestica | MD09G1092900.v1.1 MD17G1083000.v1.1 |
| prunus_persica | Prupe.3G232200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0161991 |
| rosa_laevigata | RLG00000021313 |
| rosa_multiflora | Rmu_co8420029.1_g000001 Rmu_sc0008428.1_g000003 Rmu_sc0038528.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00088420 |
| rosa_rugosa | Rorug02G0493800 |
| rosa_samantha | Rh2AG559700 Rh2BG573100 Rh2CG543300 Rh2DG582900 |
| rosa_wichuraiana | Rw2G046320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 454 |
| AatII | GACGTC | 2 cut(s) | 734, 923 |
| Acc16I | TGCGCA | 1 cut(s) | 1431 |
| AccI | GTMKAC | 1 cut(s) | 917 |
| AccIII | TCCGGA | 2 cut(s) | 747, 1089 |
| AciI | CCGC | 6 cut(s) | 52, 69, 476, 899, 1120, 1311 |
| AclWI | GGATC | 2 cut(s) | 12, 583 |
| AcoI | YGGCCR | 1 cut(s) | 209 |
| AcsI | RAATTY | 3 cut(s) | 401, 407, 1551 |
| AcuI | CTGAAG | 3 cut(s) | 1082, 1302, 1317 |
| AcyI | GRCGYC | 3 cut(s) | 591, 731, 920 |
| AfaI | GTAC | 3 cut(s) | 392, 692, 1124 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 367, 374, 632 |
| AgeI | ACCGGT | 2 cut(s) | 367, 1076 |
| AgsI | TTSAA | 8 cut(s) | 183, 219, 406, 937, 1006, 1240, 1510, 1526 |
| AhlI | ACTAGT | 1 cut(s) | 1394 |
| Alw21I | GWGCWC | 3 cut(s) | 647, 773, 1467 |
| Alw26I | GTCTC | 1 cut(s) | 259 |
| AlwI | GGATC | 2 cut(s) | 12, 583 |
| Ama87I | CYCGRG | 2 cut(s) | 36, 566 |
| Aor13HI | TCCGGA | 2 cut(s) | 747, 1089 |
| AoxI | GGCC | 2 cut(s) | 117, 209 |
| ApeKI | GCWGC | 5 cut(s) | 585, 886, 1558, 1561, 1564 |
| ApoI | RAATTY | 3 cut(s) | 401, 407, 1551 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 640, 672, 910, 937, 942, 969 |
| AseI | ATTAAT | 1 cut(s) | 612 |
| AsiGI | ACCGGT | 2 cut(s) | 367, 1076 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1330 |
| AspLEI | GCGC | 2 cut(s) | 886, 1432 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 1 cut(s) | 1054 |
| AsuII | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| AvaI | CYCGRG | 2 cut(s) | 36, 566 |
| BalI | TGGCCA | 1 cut(s) | 211 |
| BanII | GRGCYC | 4 cut(s) | 640, 647, 773, 1467 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1003, 1035 |
| BbsI | GAAGAC | 2 cut(s) | 435, 450 |
| Bbv12I | GWGCWC | 3 cut(s) | 647, 773, 1467 |
| BbvI | GCAGC | 5 cut(s) | 597, 898, 1545, 1573, 1576 |
| BccI | CCATC | 7 cut(s) | 100, 197, 220, 258, 720, 1322, 1486 |
| BceAI | ACGGC | 3 cut(s) | 412, 418, 666 |
| BciVI | GTATCC | 1 cut(s) | 1291 |
| BclI | TGATCA | 2 cut(s) | 807, 1165 |
| BcoDI | GTCTC | 1 cut(s) | 259 |
| BcuI | ACTAGT | 1 cut(s) | 1394 |
| BfaI | CTAG | 4 cut(s) | 242, 1032, 1395, 1487 |
| BfmI | CTRYAG | 2 cut(s) | 1468, 1559 |
| BfuI | GTATCC | 1 cut(s) | 1291 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1382 |
| BisI | GCNGC | 6 cut(s) | 586, 887, 1311, 1559, 1562, 1565 |
| BlpI | GCTNAGC | 1 cut(s) | 1386 |
| BlsI | GCNGC | 6 cut(s) | 587, 888, 1312, 1560, 1563, 1566 |
| BmeT110I | CYCGRG | 2 cut(s) | 36, 566 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmiI | GGNNCC | 1 cut(s) | 598 |
| BmsI | GCATC | 4 cut(s) | 139, 724, 1083, 1101 |
| BoxI | GACNNNNGTC | 1 cut(s) | 302 |
| BpiI | GAAGAC | 2 cut(s) | 435, 450 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1260, 1292 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1386 |
| Bpu14I | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| BpuEI | CTTGAG | 1 cut(s) | 1481 |
| BsaBI | GATNNNNATC | 1 cut(s) | 741 |
| BsaHI | GRCGYC | 3 cut(s) | 591, 731, 920 |
| BsaJI | CCNNGG | 5 cut(s) | 36, 193, 488, 890, 1380 |
| BsaWI | WCCGGW | 4 cut(s) | 367, 747, 1076, 1089 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 284, 314, 668, 698, 1331, 1361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 367, 374, 632 |
| Bse118I | RCCGGY | 4 cut(s) | 115, 367, 593, 1076 |
| Bse1I | ACTGG | 1 cut(s) | 1044 |
| Bse3DI | GCAATG | 2 cut(s) | 1121, 1162 |
| Bse8I | GATNNNNATC | 1 cut(s) | 741 |
| BseAI | TCCGGA | 2 cut(s) | 747, 1089 |
| BseDI | CCNNGG | 5 cut(s) | 36, 193, 488, 890, 1380 |
| BseGI | GGATG | 2 cut(s) | 189, 1098 |
| BseJI | GATNNNNATC | 1 cut(s) | 741 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 367, 374, 632 |
| BseMI | GCAATG | 2 cut(s) | 1121, 1162 |
| BseMII | CTCAG | 4 cut(s) | 653, 1356, 1377, 1422 |
| BseNI | ACTGG | 1 cut(s) | 1044 |
| BseRI | GAGGAG | 2 cut(s) | 210, 213 |
| BseXI | GCAGC | 5 cut(s) | 597, 898, 1545, 1573, 1576 |
| BsgI | GTGCAG | 2 cut(s) | 604, 1285 |
| Bsh1285I | CGRYCG | 1 cut(s) | 286 |
| BshFI | GGCC | 2 cut(s) | 119, 211 |
| BshTI | ACCGGT | 2 cut(s) | 367, 1076 |
| BsiEI | CGRYCG | 1 cut(s) | 286 |
| BsiHKAI | GWGCWC | 3 cut(s) | 647, 773, 1467 |
| BsiHKCI | CYCGRG | 2 cut(s) | 36, 566 |
| BslFI | GGGAC | 1 cut(s) | 859 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 367, 374, 632 |
| BsmAI | GTCTC | 1 cut(s) | 259 |
| BsmFI | GGGAC | 1 cut(s) | 859 |
| BsnI | GGCC | 2 cut(s) | 119, 211 |
| BsoBI | CYCGRG | 2 cut(s) | 36, 566 |
| Bsp119I | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| Bsp1286I | GDGCHC | 4 cut(s) | 640, 647, 773, 1467 |
| Bsp13I | TCCGGA | 2 cut(s) | 747, 1089 |
| Bsp143I | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1386 |
| BspACI | CCGC | 6 cut(s) | 52, 69, 476, 899, 1120, 1311 |
| BspANI | GGCC | 2 cut(s) | 119, 211 |
| BspCNI | CTCAG | 4 cut(s) | 652, 1355, 1378, 1421 |
| BspEI | TCCGGA | 2 cut(s) | 747, 1089 |
| BspLI | GGNNCC | 1 cut(s) | 598 |
| BspMAI | CTGCAG | 1 cut(s) | 1563 |
| BspPI | GGATC | 2 cut(s) | 12, 583 |
| BspT104I | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| BsrDI | GCAATG | 2 cut(s) | 1121, 1162 |
| BsrFI | RCCGGY | 4 cut(s) | 115, 367, 593, 1076 |
| BsrI | ACTGG | 1 cut(s) | 1044 |
| BssAI | RCCGGY | 4 cut(s) | 115, 367, 593, 1076 |
| BssECI | CCNNGG | 5 cut(s) | 36, 193, 488, 890, 1380 |
| BssMI | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| BssNI | GRCGYC | 3 cut(s) | 591, 731, 920 |
| Bst4CI | ACNGT | 5 cut(s) | 287, 423, 551, 1147, 1176 |
| Bst6I | CTCTTC | 1 cut(s) | 1491 |
| BstACI | GRCGYC | 3 cut(s) | 591, 731, 920 |
| BstBI | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| BstC8I | GCNNGC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 5 cut(s) | 639, 687, 1342, 1386, 1408 |
| BstF5I | GGATG | 2 cut(s) | 189, 1098 |
| BstHHI | GCGC | 2 cut(s) | 886, 1432 |
| BstKTI | GATC | 4 cut(s) | 7, 578, 810, 1168 |
| BstMAI | GTCTC | 1 cut(s) | 259 |
| BstMBI | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| BstMCI | CGRYCG | 1 cut(s) | 286 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1169, 1373, 1382, 1555, 1564 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 302 |
| BstSFI | CTRYAG | 2 cut(s) | 1468, 1559 |
| BstV1I | GCAGC | 5 cut(s) | 597, 898, 1545, 1573, 1576 |
| BstV2I | GAAGAC | 2 cut(s) | 435, 450 |
| BsuI | GTATCC | 1 cut(s) | 1291 |
| BsuRI | GGCC | 2 cut(s) | 119, 211 |
| BtsCI | GGATG | 2 cut(s) | 189, 1098 |
| BtsI | GCAGTG | 1 cut(s) | 860 |
| BtsIMutI | CAGTG | 3 cut(s) | 860, 1037, 1278 |
| Cac8I | GCNNGC | 1 cut(s) | 117 |
| CfoI | GCGC | 2 cut(s) | 886, 1432 |
| Cfr10I | RCCGGY | 4 cut(s) | 115, 367, 593, 1076 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| Cfr9I | CCCGGG | 1 cut(s) | 36 |
| CseI | GACGC | 2 cut(s) | 599, 859 |
| Csp6I | GTAC | 3 cut(s) | 391, 691, 1123 |
| CspAI | ACCGGT | 2 cut(s) | 367, 1076 |
| CviAII | CATG | 4 cut(s) | 694, 1536, 1591, 1596 |
| CviQI | GTAC | 3 cut(s) | 391, 691, 1123 |
| DdeI | CTNAG | 5 cut(s) | 639, 687, 1342, 1386, 1408 |
| DpnI | GATC | 4 cut(s) | 6, 577, 809, 1167 |
| DpnII | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 454 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 454 |
| EaeI | YGGCCR | 1 cut(s) | 209 |
| Eam1104I | CTCTTC | 1 cut(s) | 1491 |
| EarI | CTCTTC | 1 cut(s) | 1491 |
| EciI | GGCGGA | 1 cut(s) | 914 |
| Ecl136II | GAGCTC | 3 cut(s) | 645, 771, 1465 |
| Eco24I | GRGCYC | 4 cut(s) | 640, 647, 773, 1467 |
| Eco32I | GATATC | 2 cut(s) | 144, 1588 |
| Eco53kI | GAGCTC | 3 cut(s) | 645, 771, 1465 |
| Eco57I | CTGAAG | 3 cut(s) | 1082, 1302, 1317 |
| Eco88I | CYCGRG | 2 cut(s) | 36, 566 |
| EcoICRI | GAGCTC | 3 cut(s) | 645, 771, 1465 |
| EcoRV | GATATC | 2 cut(s) | 144, 1588 |
| EcoT38I | GRGCYC | 4 cut(s) | 640, 647, 773, 1467 |
| FaeI | CATG | 4 cut(s) | 697, 1539, 1594, 1599 |
| FaqI | GGGAC | 1 cut(s) | 859 |
| FatI | CATG | 4 cut(s) | 693, 1535, 1590, 1595 |
| FauI | CCCGC | 2 cut(s) | 59, 76 |
| FauNDI | CATATG | 1 cut(s) | 1218 |
| FbaI | TGATCA | 2 cut(s) | 807, 1165 |
| FblI | GTMKAC | 1 cut(s) | 917 |
| Fnu4HI | GCNGC | 6 cut(s) | 586, 887, 1311, 1559, 1562, 1565 |
| FokI | GGATG | 2 cut(s) | 176, 1105 |
| FriOI | GRGCYC | 4 cut(s) | 640, 647, 773, 1467 |
| Fsp4HI | GCNGC | 6 cut(s) | 586, 887, 1311, 1559, 1562, 1565 |
| FspBI | CTAG | 4 cut(s) | 242, 1032, 1395, 1487 |
| FspI | TGCGCA | 1 cut(s) | 1431 |
| GlaI | GCGC | 2 cut(s) | 885, 1431 |
| GluI | GCNGC | 6 cut(s) | 586, 887, 1311, 1559, 1562, 1565 |
| HaeIII | GGCC | 2 cut(s) | 119, 211 |
| HgaI | GACGC | 2 cut(s) | 599, 859 |
| HhaI | GCGC | 2 cut(s) | 886, 1432 |
| Hin1I | GRCGYC | 3 cut(s) | 591, 731, 920 |
| Hin1II | CATG | 4 cut(s) | 697, 1539, 1594, 1599 |
| Hin6I | GCGC | 2 cut(s) | 884, 1430 |
| HinP1I | GCGC | 2 cut(s) | 884, 1430 |
| HincII | GTYRAC | 3 cut(s) | 505, 828, 918 |
| HindII | GTYRAC | 3 cut(s) | 505, 828, 918 |
| HindIII | AAGCTT | 1 cut(s) | 1191 |
| HphI | GGTGA | 1 cut(s) | 1054 |
| Hpy166II | GTNNAC | 4 cut(s) | 393, 505, 828, 918 |
| Hpy8I | GTNNAC | 4 cut(s) | 393, 505, 828, 918 |
| HpyAV | CCTTC | 3 cut(s) | 867, 963, 1277 |
| HpyCH4III | ACNGT | 5 cut(s) | 287, 423, 551, 1147, 1176 |
| HpyCH4IV | ACGT | 2 cut(s) | 731, 920 |
| HpyCH4V | TGCA | 6 cut(s) | 585, 1114, 1133, 1266, 1289, 1561 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1169, 1373, 1382, 1555, 1564 |
| HpyF3I | CTNAG | 5 cut(s) | 639, 687, 1342, 1386, 1408 |
| HpySE526I | ACGT | 2 cut(s) | 731, 920 |
| Hsp92I | GRCGYC | 3 cut(s) | 591, 731, 920 |
| Hsp92II | CATG | 4 cut(s) | 697, 1539, 1594, 1599 |
| HspAI | GCGC | 2 cut(s) | 884, 1430 |
| Kpn2I | TCCGGA | 2 cut(s) | 747, 1089 |
| KroI | GCCGGC | 1 cut(s) | 115 |
| KroNI | GCCGGC | 1 cut(s) | 117 |
| Ksp22I | TGATCA | 2 cut(s) | 807, 1165 |
| Kzo9I | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| LmnI | GCTCC | 4 cut(s) | 53, 191, 876, 1223 |
| Lsp1109I | GCAGC | 5 cut(s) | 597, 898, 1545, 1573, 1576 |
| LweI | GCATC | 4 cut(s) | 139, 724, 1083, 1101 |
| MaeI | CTAG | 4 cut(s) | 242, 1032, 1395, 1487 |
| MaeII | ACGT | 2 cut(s) | 731, 920 |
| MaeIII | GTNAC | 3 cut(s) | 304, 1035, 1066 |
| MalI | GATC | 4 cut(s) | 6, 577, 809, 1167 |
| MboI | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| MboII | GAAGA | 7 cut(s) | 54, 207, 435, 450, 1011, 1313, 1508 |
| MfeI | CAATTG | 1 cut(s) | 1526 |
| MhlI | GDGCHC | 4 cut(s) | 640, 647, 773, 1467 |
| MlsI | TGGCCA | 1 cut(s) | 211 |
| MluCI | AATT | 7 cut(s) | 401, 407, 820, 1051, 1412, 1526, 1551 |
| MluNI | TGGCCA | 1 cut(s) | 211 |
| MlyI | GAGTC | 4 cut(s) | 230, 261, 578, 958 |
| MmeI | TCCRAC | 2 cut(s) | 714, 968 |
| Mox20I | TGGCCA | 1 cut(s) | 211 |
| MroI | TCCGGA | 2 cut(s) | 747, 1089 |
| MroNI | GCCGGC | 1 cut(s) | 115 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1330 |
| MscI | TGGCCA | 1 cut(s) | 211 |
| MseI | TTAA | 4 cut(s) | 333, 612, 792, 1353 |
| Msp20I | TGGCCA | 1 cut(s) | 211 |
| MspA1I | CMGCKG | 1 cut(s) | 1558 |
| MunI | CAATTG | 1 cut(s) | 1526 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1169, 1373, 1382, 1555, 1564 |
| NaeI | GCCGGC | 1 cut(s) | 117 |
| NdeI | CATATG | 1 cut(s) | 1218 |
| NdeII | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| NgoMIV | GCCGGC | 1 cut(s) | 115 |
| NlaIII | CATG | 4 cut(s) | 697, 1539, 1594, 1599 |
| NlaIV | GGNNCC | 1 cut(s) | 598 |
| NmeAIII | GCCGAG | 3 cut(s) | 514, 651, 1361 |
| NmuCI | GTSAC | 3 cut(s) | 304, 1035, 1066 |
| NsbI | TGCGCA | 1 cut(s) | 1431 |
| NspV | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| PaeR7I | CTCGAG | 1 cut(s) | 566 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 431, 437, 443, 656, 926, 953 |
| PdiI | GCCGGC | 1 cut(s) | 117 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1330 |
| PfeI | GAWTC | 6 cut(s) | 179, 258, 737, 751, 1532, 1571 |
| PflFI | GACNNNGTC | 1 cut(s) | 832 |
| PfoI | TCCNGGA | 1 cut(s) | 413 |
| PinAI | ACCGGT | 2 cut(s) | 367, 1076 |
| PkrI | GCNGC | 6 cut(s) | 587, 888, 1312, 1560, 1563, 1566 |
| PleI | GAGTC | 4 cut(s) | 230, 261, 577, 957 |
| PpsI | GAGTC | 4 cut(s) | 230, 261, 577, 957 |
| PshAI | GACNNNNGTC | 1 cut(s) | 302 |
| PshBI | ATTAAT | 1 cut(s) | 612 |
| Psp124BI | GAGCTC | 3 cut(s) | 647, 773, 1467 |
| PspN4I | GGNNCC | 1 cut(s) | 598 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PstI | CTGCAG | 1 cut(s) | 1563 |
| PsyI | GACNNNGTC | 1 cut(s) | 832 |
| PvuII | CAGCTG | 1 cut(s) | 1558 |
| RsaI | GTAC | 3 cut(s) | 392, 692, 1124 |
| RsaNI | GTAC | 3 cut(s) | 391, 691, 1123 |
| SacI | GAGCTC | 3 cut(s) | 647, 773, 1467 |
| SalI | GTCGAC | 1 cut(s) | 916 |
| SaqAI | TTAA | 4 cut(s) | 333, 612, 792, 1353 |
| SatI | GCNGC | 6 cut(s) | 586, 887, 1311, 1559, 1562, 1565 |
| Sau3AI | GATC | 4 cut(s) | 4, 575, 807, 1165 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| SchI | GAGTC | 4 cut(s) | 230, 261, 578, 958 |
| SduI | GDGCHC | 4 cut(s) | 640, 647, 773, 1467 |
| SfaNI | GCATC | 4 cut(s) | 139, 724, 1083, 1101 |
| SfcI | CTRYAG | 2 cut(s) | 1468, 1559 |
| Sfr274I | CTCGAG | 1 cut(s) | 566 |
| SfuI | TTCGAA | 3 cut(s) | 461, 956, 1324 |
| SlaI | CTCGAG | 1 cut(s) | 566 |
| SmaI | CCCGGG | 1 cut(s) | 38 |
| SmlI | CTYRAG | 2 cut(s) | 566, 1460 |
| SmoI | CTYRAG | 2 cut(s) | 566, 1460 |
| SpeI | ACTAGT | 1 cut(s) | 1394 |
| Sse9I | AATT | 7 cut(s) | 401, 407, 820, 1051, 1412, 1526, 1551 |
| SsiI | CCGC | 6 cut(s) | 52, 69, 476, 899, 1120, 1311 |
| SspI | AATATT | 1 cut(s) | 610 |
| SspMI | CTAG | 4 cut(s) | 242, 1032, 1395, 1487 |
| SstI | GAGCTC | 3 cut(s) | 647, 773, 1467 |
| TaaI | ACNGT | 5 cut(s) | 287, 423, 551, 1147, 1176 |
| TaiI | ACGT | 2 cut(s) | 734, 923 |
| TaqII | GACCGA | 1 cut(s) | 1085 |
| TasI | AATT | 7 cut(s) | 401, 407, 820, 1051, 1412, 1526, 1551 |
| TatI | WGTACW | 1 cut(s) | 690 |
| TauI | GCSGC | 1 cut(s) | 1313 |
| TfiI | GAWTC | 6 cut(s) | 179, 258, 737, 751, 1532, 1571 |
| Tru1I | TTAA | 4 cut(s) | 333, 612, 792, 1353 |
| Tru9I | TTAA | 4 cut(s) | 333, 612, 792, 1353 |
| TscAI | CASTG | 3 cut(s) | 860, 1044, 1285 |
| TseFI | GTSAC | 3 cut(s) | 304, 1035, 1066 |
| TseI | GCWGC | 5 cut(s) | 585, 886, 1558, 1561, 1564 |
| Tsp45I | GTSAC | 3 cut(s) | 304, 1035, 1066 |
| TspDTI | ATGAA | 2 cut(s) | 797, 1011 |
| TspGWI | ACGGA | 3 cut(s) | 292, 490, 522 |
| TspMI | CCCGGG | 1 cut(s) | 36 |
| TspRI | CASTG | 3 cut(s) | 860, 1044, 1285 |
| Tth111I | GACNNNGTC | 1 cut(s) | 832 |
| VspI | ATTAAT | 1 cut(s) | 612 |
| XapI | RAATTY | 3 cut(s) | 401, 407, 1551 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1191 |
| XhoI | CTCGAG | 1 cut(s) | 566 |
| XmaI | CCCGGG | 1 cut(s) | 36 |
| XmiI | GTMKAC | 1 cut(s) | 917 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1330 |
| XspI | CTAG | 4 cut(s) | 242, 1032, 1395, 1487 |
| ZraI | GACGTC | 2 cut(s) | 732, 921 |