QWRF motif-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20616 AT2G20815 AT2G20815 AT2G20815 AT2G20815 |
| malus_domestica | MD09G1092900.v1.1 MD17G1083000.v1.1 |
| prunus_persica | Prupe.3G232200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0161991 |
| rosa_laevigata | RLG00000021313 |
| rosa_multiflora | Rmu_co8420029.1_g000001 Rmu_sc0008428.1_g000003 Rmu_sc0038528.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00088420 |
| rosa_rugosa | Rorug02G0493800 |
| rosa_samantha | Rh2AG559700 Rh2BG573100 Rh2CG543300 Rh2DG582900 |
| rosa_wichuraiana | Rw2G046320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1253 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 682 |
| Acc16I | TGCGCA | 1 cut(s) | 1596 |
| Acc65I | GGTACC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 1 cut(s) | 751 |
| AccI | GTMKAC | 1 cut(s) | 573 |
| AccII | CGCG | 2 cut(s) | 69, 82 |
| AciI | CCGC | 5 cut(s) | 67, 82, 370, 695, 1550 |
| AclWI | GGATC | 2 cut(s) | 460, 652 |
| AcsI | RAATTY | 4 cut(s) | 343, 609, 833, 1321 |
| AcuI | CTGAAG | 4 cut(s) | 87, 1083, 1307, 1334 |
| AfaI | GTAC | 3 cut(s) | 740, 753, 1437 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 242, 446, 695, 806, 1447 |
| AflII | CTTAAG | 1 cut(s) | 1343 |
| AhlI | ACTAGT | 1 cut(s) | 983 |
| AjnI | CCWGG | 1 cut(s) | 556 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 682, 714 |
| Alw21I | GWGCWC | 1 cut(s) | 865 |
| Alw26I | GTCTC | 3 cut(s) | 606, 690, 822 |
| AlwI | GGATC | 2 cut(s) | 460, 652 |
| Ama87I | CYCGRG | 1 cut(s) | 466 |
| AoxI | GGCC | 4 cut(s) | 232, 251, 670, 946 |
| ApaI | GGGCCC | 1 cut(s) | 236 |
| ApeKI | GCWGC | 3 cut(s) | 1388, 1475, 1723 |
| ApoI | RAATTY | 4 cut(s) | 343, 609, 833, 1321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 833 |
| Asp718I | GGTACC | 1 cut(s) | 751 |
| AspLEI | GCGC | 4 cut(s) | 171, 422, 1105, 1597 |
| AspS9I | GGNCC | 4 cut(s) | 232, 233, 252, 946 |
| AsuC2I | CCSGG | 1 cut(s) | 906 |
| AsuHPI | GGTGA | 5 cut(s) | 87, 293, 829, 894, 1533 |
| AsuII | TTCGAA | 1 cut(s) | 542 |
| AsuNHI | GCTAGC | 1 cut(s) | 1528 |
| AvaI | CYCGRG | 1 cut(s) | 466 |
| BaeGI | GKGCMC | 1 cut(s) | 236 |
| BanI | GGYRCC | 1 cut(s) | 751 |
| BanII | GRGCYC | 2 cut(s) | 236, 865 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1039, 1071 |
| BbsI | GAAGAC | 2 cut(s) | 61, 510 |
| Bbv12I | GWGCWC | 1 cut(s) | 865 |
| BbvI | GCAGC | 3 cut(s) | 1400, 1462, 1735 |
| BccI | CCATC | 7 cut(s) | 145, 161, 245, 449, 611, 653, 1114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 563, 597 |
| BciT130I | CCWGG | 1 cut(s) | 558 |
| BcnI | CCSGG | 1 cut(s) | 906 |
| BcoDI | GTCTC | 3 cut(s) | 606, 690, 822 |
| BcuI | ACTAGT | 1 cut(s) | 983 |
| BfaI | CTAG | 7 cut(s) | 293, 966, 984, 1065, 1179, 1292, 1529 |
| BfmI | CTRYAG | 2 cut(s) | 1274, 1429 |
| BfoI | RGCGCY | 2 cut(s) | 423, 1106 |
| BfrI | CTTAAG | 1 cut(s) | 1343 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 166 |
| BisI | GCNGC | 4 cut(s) | 370, 1389, 1476, 1724 |
| BlsI | GCNGC | 4 cut(s) | 371, 1390, 1477, 1725 |
| Bme1390I | CCNGG | 2 cut(s) | 558, 906 |
| BmeT110I | CYCGRG | 1 cut(s) | 466 |
| BmgT120I | GGNCC | 4 cut(s) | 232, 233, 252, 946 |
| BmiI | GGNNCC | 3 cut(s) | 234, 235, 753 |
| BmrFI | CCNGG | 2 cut(s) | 558, 906 |
| BmsI | GCATC | 2 cut(s) | 772, 1146 |
| BmtI | GCTAGC | 1 cut(s) | 1532 |
| BpiI | GAAGAC | 2 cut(s) | 61, 510 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 847, 879, 1425, 1457 |
| Bpu14I | TTCGAA | 1 cut(s) | 542 |
| BpuEI | CTTGAG | 1 cut(s) | 1673 |
| BpuMI | CCSGG | 1 cut(s) | 906 |
| Bsa29I | ATCGAT | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 786 |
| BsaI | GGTCTC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 5 cut(s) | 241, 304, 423, 557, 999 |
| BsaWI | WCCGGW | 1 cut(s) | 176 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 242, 446, 695, 806, 1447 |
| Bse1I | ACTGG | 1 cut(s) | 161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 786 |
| BseBI | CCWGG | 1 cut(s) | 558 |
| BseCI | ATCGAT | 1 cut(s) | 455 |
| BseDI | CCNNGG | 5 cut(s) | 241, 304, 423, 557, 999 |
| BseGI | GGATG | 3 cut(s) | 237, 622, 1201 |
| BseJI | GATNNNNATC | 1 cut(s) | 786 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 242, 446, 695, 806, 1447 |
| BseMII | CTCAG | 2 cut(s) | 64, 1083 |
| BseNI | ACTGG | 1 cut(s) | 161 |
| BseRI | GAGGAG | 3 cut(s) | 871, 1631, 1681 |
| BseSI | GKGCMC | 1 cut(s) | 236 |
| BseXI | GCAGC | 3 cut(s) | 1400, 1462, 1735 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BsgI | GTGCAG | 2 cut(s) | 673, 1473 |
| Bsh1236I | CGCG | 2 cut(s) | 69, 82 |
| BshFI | GGCC | 4 cut(s) | 234, 253, 672, 948 |
| BshNI | GGYRCC | 1 cut(s) | 751 |
| BshVI | ATCGAT | 1 cut(s) | 455 |
| BsiHKAI | GWGCWC | 1 cut(s) | 865 |
| BsiHKCI | CYCGRG | 1 cut(s) | 466 |
| BsiSI | CCGG | 3 cut(s) | 166, 177, 905 |
| BslFI | GGGAC | 2 cut(s) | 787, 972 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 242, 446, 695, 806, 1447 |
| BsmAI | GTCTC | 3 cut(s) | 606, 690, 822 |
| BsmBI | CGTCTC | 1 cut(s) | 606 |
| BsmFI | GGGAC | 2 cut(s) | 787, 972 |
| BsnI | GGCC | 4 cut(s) | 234, 253, 672, 948 |
| Bso31I | GGTCTC | 1 cut(s) | 690 |
| BsoBI | CYCGRG | 1 cut(s) | 466 |
| Bsp119I | TTCGAA | 1 cut(s) | 542 |
| Bsp120I | GGGCCC | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 2 cut(s) | 236, 865 |
| Bsp143I | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| BspACI | CCGC | 5 cut(s) | 67, 82, 370, 695, 1550 |
| BspANI | GGCC | 4 cut(s) | 234, 253, 672, 948 |
| BspCNI | CTCAG | 2 cut(s) | 63, 1082 |
| BspDI | ATCGAT | 1 cut(s) | 455 |
| BspFNI | CGCG | 2 cut(s) | 69, 82 |
| BspHI | TCATGA | 1 cut(s) | 1754 |
| BspLI | GGNNCC | 3 cut(s) | 234, 235, 753 |
| BspMAI | CTGCAG | 1 cut(s) | 1433 |
| BspOI | GCTAGC | 1 cut(s) | 1532 |
| BspPI | GGATC | 2 cut(s) | 460, 652 |
| BspQI | GCTCTTC | 1 cut(s) | 1491 |
| BspT104I | TTCGAA | 1 cut(s) | 542 |
| BspT107I | GGYRCC | 1 cut(s) | 751 |
| BspTI | CTTAAG | 1 cut(s) | 1343 |
| BspTNI | GGTCTC | 1 cut(s) | 690 |
| BsrI | ACTGG | 1 cut(s) | 161 |
| BssECI | CCNNGG | 5 cut(s) | 241, 304, 423, 557, 999 |
| BssMI | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| BssT1I | CCWWGG | 3 cut(s) | 304, 423, 999 |
| Bst2UI | CCWGG | 1 cut(s) | 558 |
| Bst4CI | ACNGT | 5 cut(s) | 600, 679, 1221, 1561, 1572 |
| Bst6I | CTCTTC | 3 cut(s) | 262, 763, 1491 |
| BstAFI | CTTAAG | 1 cut(s) | 1343 |
| BstBI | TTCGAA | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 2 cut(s) | 80, 1530 |
| BstDEI | CTNAG | 2 cut(s) | 50, 1069 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| BstF5I | GGATG | 3 cut(s) | 237, 622, 1201 |
| BstFNI | CGCG | 2 cut(s) | 69, 82 |
| BstH2I | RGCGCY | 2 cut(s) | 423, 1106 |
| BstHHI | GCGC | 4 cut(s) | 171, 422, 1105, 1597 |
| BstKTI | GATC | 7 cut(s) | 301, 328, 455, 647, 1337, 1504, 1630 |
| BstMAI | GTCTC | 3 cut(s) | 606, 690, 822 |
| BstMBI | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 75, 166, 660, 669, 1481 |
| BstNI | CCWGG | 1 cut(s) | 558 |
| BstNSI | RCATGY | 1 cut(s) | 1496 |
| BstSCI | CCNGG | 2 cut(s) | 556, 904 |
| BstSFI | CTRYAG | 2 cut(s) | 1274, 1429 |
| BstSLI | GKGCMC | 1 cut(s) | 236 |
| BstUI | CGCG | 2 cut(s) | 69, 82 |
| BstV1I | GCAGC | 3 cut(s) | 1400, 1462, 1735 |
| BstV2I | GAAGAC | 2 cut(s) | 61, 510 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 680, 1006 |
| Bsu15I | ATCGAT | 1 cut(s) | 455 |
| BsuRI | GGCC | 4 cut(s) | 234, 253, 672, 948 |
| BsuTUI | ATCGAT | 1 cut(s) | 455 |
| BtsCI | GGATG | 3 cut(s) | 237, 622, 1201 |
| BtsI | GCAGTG | 2 cut(s) | 661, 1166 |
| BtsIMutI | CAGTG | 3 cut(s) | 661, 1077, 1166 |
| Cac8I | GCNNGC | 2 cut(s) | 80, 1530 |
| CciI | TCATGA | 1 cut(s) | 1754 |
| CfoI | GCGC | 4 cut(s) | 171, 422, 1105, 1597 |
| Cfr13I | GGNCC | 4 cut(s) | 232, 233, 252, 946 |
| ClaI | ATCGAT | 1 cut(s) | 455 |
| Csp6I | GTAC | 3 cut(s) | 739, 752, 1436 |
| CviAII | CATG | 8 cut(s) | 721, 742, 943, 1384, 1399, 1493, 1516, 1755 |
| CviQI | GTAC | 3 cut(s) | 739, 752, 1436 |
| DdeI | CTNAG | 2 cut(s) | 50, 1069 |
| DpnI | GATC | 7 cut(s) | 300, 327, 454, 646, 1336, 1503, 1629 |
| DpnII | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 682 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 682 |
| Eam1104I | CTCTTC | 3 cut(s) | 262, 763, 1491 |
| EarI | CTCTTC | 3 cut(s) | 262, 763, 1491 |
| EciI | GGCGGA | 1 cut(s) | 1565 |
| Ecl136II | GAGCTC | 1 cut(s) | 863 |
| Eco130I | CCWWGG | 3 cut(s) | 304, 423, 999 |
| Eco24I | GRGCYC | 2 cut(s) | 236, 865 |
| Eco31I | GGTCTC | 1 cut(s) | 690 |
| Eco32I | GATATC | 2 cut(s) | 804, 1206 |
| Eco53kI | GAGCTC | 1 cut(s) | 863 |
| Eco57I | CTGAAG | 4 cut(s) | 87, 1083, 1307, 1334 |
| Eco88I | CYCGRG | 1 cut(s) | 466 |
| EcoICRI | GAGCTC | 1 cut(s) | 863 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| EcoRI | GAATTC | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 1 cut(s) | 556 |
| EcoRV | GATATC | 2 cut(s) | 804, 1206 |
| EcoT14I | CCWWGG | 3 cut(s) | 304, 423, 999 |
| EcoT38I | GRGCYC | 2 cut(s) | 236, 865 |
| ErhI | CCWWGG | 3 cut(s) | 304, 423, 999 |
| Esp3I | CGTCTC | 1 cut(s) | 606 |
| FaeI | CATG | 8 cut(s) | 724, 745, 946, 1387, 1402, 1496, 1519, 1758 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1290, 1322 |
| FaqI | GGGAC | 2 cut(s) | 787, 972 |
| FatI | CATG | 8 cut(s) | 720, 741, 942, 1383, 1398, 1492, 1515, 1754 |
| FauI | CCCGC | 2 cut(s) | 74, 688 |
| FauNDI | CATATG | 1 cut(s) | 1234 |
| FblI | GTMKAC | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 4 cut(s) | 370, 1389, 1476, 1724 |
| FokI | GGATG | 3 cut(s) | 224, 629, 1208 |
| FriOI | GRGCYC | 2 cut(s) | 236, 865 |
| Fsp4HI | GCNGC | 4 cut(s) | 370, 1389, 1476, 1724 |
| FspBI | CTAG | 7 cut(s) | 293, 966, 984, 1065, 1179, 1292, 1529 |
| FspI | TGCGCA | 1 cut(s) | 1596 |
| GlaI | GCGC | 4 cut(s) | 170, 421, 1104, 1596 |
| GluI | GCNGC | 4 cut(s) | 370, 1389, 1476, 1724 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| HaeII | RGCGCY | 2 cut(s) | 423, 1106 |
| HaeIII | GGCC | 4 cut(s) | 234, 253, 672, 948 |
| HapII | CCGG | 3 cut(s) | 166, 177, 905 |
| HhaI | GCGC | 4 cut(s) | 171, 422, 1105, 1597 |
| Hin1II | CATG | 8 cut(s) | 724, 745, 946, 1387, 1402, 1496, 1519, 1758 |
| Hin6I | GCGC | 4 cut(s) | 169, 420, 1103, 1595 |
| HinP1I | GCGC | 4 cut(s) | 169, 420, 1103, 1595 |
| HincII | GTYRAC | 1 cut(s) | 574 |
| HindII | GTYRAC | 1 cut(s) | 574 |
| HindIII | AAGCTT | 1 cut(s) | 1304 |
| HinfI | GANTC | 4 cut(s) | 638, 782, 1355, 1657 |
| HpaII | CCGG | 3 cut(s) | 166, 177, 905 |
| HphI | GGTGA | 5 cut(s) | 87, 293, 829, 894, 1533 |
| Hpy166II | GTNNAC | 1 cut(s) | 574 |
| Hpy8I | GTNNAC | 1 cut(s) | 574 |
| Hpy99I | CGWCG | 4 cut(s) | 517, 578, 886, 928 |
| HpyAV | CCTTC | 1 cut(s) | 513 |
| HpyCH4III | ACNGT | 5 cut(s) | 600, 679, 1221, 1561, 1572 |
| HpyCH4V | TGCA | 4 cut(s) | 654, 1159, 1431, 1454 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 75, 166, 660, 669, 1481 |
| HpyF3I | CTNAG | 2 cut(s) | 50, 1069 |
| Hsp92II | CATG | 8 cut(s) | 724, 745, 946, 1387, 1402, 1496, 1519, 1758 |
| HspAI | GCGC | 4 cut(s) | 169, 420, 1103, 1595 |
| KpnI | GGTACC | 1 cut(s) | 755 |
| Kzo9I | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| LguI | GCTCTTC | 1 cut(s) | 1491 |
| LmnI | GCTCC | 1 cut(s) | 1552 |
| Lsp1109I | GCAGC | 3 cut(s) | 1400, 1462, 1735 |
| LweI | GCATC | 2 cut(s) | 772, 1146 |
| MaeI | CTAG | 7 cut(s) | 293, 966, 984, 1065, 1179, 1292, 1529 |
| MaeIII | GTNAC | 3 cut(s) | 28, 900, 1228 |
| MalI | GATC | 7 cut(s) | 300, 327, 454, 646, 1336, 1503, 1629 |
| MboI | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| MfeI | CAATTG | 2 cut(s) | 1469, 1691 |
| MhlI | GDGCHC | 2 cut(s) | 236, 865 |
| MlyI | GAGTC | 2 cut(s) | 1364, 1666 |
| MmeI | TCCRAC | 1 cut(s) | 1011 |
| MroXI | GAANNNNTTC | 1 cut(s) | 833 |
| MseI | TTAA | 4 cut(s) | 758, 843, 1344, 1719 |
| MspCI | CTTAAG | 1 cut(s) | 1343 |
| MspI | CCGG | 3 cut(s) | 166, 177, 905 |
| MspR9I | CCNGG | 2 cut(s) | 558, 906 |
| MunI | CAATTG | 2 cut(s) | 1469, 1691 |
| MvaI | CCWGG | 1 cut(s) | 558 |
| MvnI | CGCG | 2 cut(s) | 69, 82 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 75, 166, 660, 669, 1481 |
| NciI | CCSGG | 1 cut(s) | 906 |
| NdeI | CATATG | 1 cut(s) | 1234 |
| NdeII | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| NheI | GCTAGC | 1 cut(s) | 1528 |
| NlaIII | CATG | 8 cut(s) | 724, 745, 946, 1387, 1402, 1496, 1519, 1758 |
| NlaIV | GGNNCC | 3 cut(s) | 234, 235, 753 |
| NmeAIII | GCCGAG | 1 cut(s) | 583 |
| NmuCI | GTSAC | 2 cut(s) | 28, 900 |
| NsbI | TGCGCA | 1 cut(s) | 1596 |
| NspI | RCATGY | 1 cut(s) | 1496 |
| NspV | TTCGAA | 1 cut(s) | 542 |
| PagI | TCATGA | 1 cut(s) | 1754 |
| PciSI | GCTCTTC | 1 cut(s) | 1491 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 518, 539, 881 |
| PdmI | GAANNNNTTC | 1 cut(s) | 833 |
| PfeI | GAWTC | 2 cut(s) | 638, 782 |
| PflFI | GACNNNGTC | 1 cut(s) | 928 |
| PkrI | GCNGC | 4 cut(s) | 371, 1390, 1477, 1725 |
| PleI | GAGTC | 2 cut(s) | 1363, 1665 |
| PpsI | GAGTC | 2 cut(s) | 1363, 1665 |
| PsiI | TTATAA | 1 cut(s) | 1253 |
| Psp124BI | GAGCTC | 1 cut(s) | 865 |
| Psp6I | CCWGG | 1 cut(s) | 556 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 556 |
| PspN4I | GGNNCC | 3 cut(s) | 234, 235, 753 |
| PspOMI | GGGCCC | 1 cut(s) | 232 |
| PspPI | GGNCC | 4 cut(s) | 232, 233, 252, 946 |
| PstI | CTGCAG | 1 cut(s) | 1433 |
| PsyI | GACNNNGTC | 1 cut(s) | 928 |
| RsaI | GTAC | 3 cut(s) | 740, 753, 1437 |
| RsaNI | GTAC | 3 cut(s) | 739, 752, 1436 |
| SacI | GAGCTC | 1 cut(s) | 865 |
| SalI | GTCGAC | 1 cut(s) | 572 |
| SapI | GCTCTTC | 1 cut(s) | 1491 |
| SaqAI | TTAA | 4 cut(s) | 758, 843, 1344, 1719 |
| SatI | GCNGC | 4 cut(s) | 370, 1389, 1476, 1724 |
| Sau3AI | GATC | 7 cut(s) | 298, 325, 452, 644, 1334, 1501, 1627 |
| Sau96I | GGNCC | 4 cut(s) | 232, 233, 252, 946 |
| SchI | GAGTC | 2 cut(s) | 1364, 1666 |
| ScrFI | CCNGG | 2 cut(s) | 558, 906 |
| SduI | GDGCHC | 2 cut(s) | 236, 865 |
| SfaNI | GCATC | 2 cut(s) | 772, 1146 |
| SfcI | CTRYAG | 2 cut(s) | 1274, 1429 |
| SfuI | TTCGAA | 1 cut(s) | 542 |
| SmlI | CTYRAG | 2 cut(s) | 1343, 1652 |
| SmoI | CTYRAG | 2 cut(s) | 1343, 1652 |
| SpeI | ACTAGT | 1 cut(s) | 983 |
| SsiI | CCGC | 5 cut(s) | 67, 82, 370, 695, 1550 |
| SspMI | CTAG | 7 cut(s) | 293, 966, 984, 1065, 1179, 1292, 1529 |
| SstI | GAGCTC | 1 cut(s) | 865 |
| StyD4I | CCNGG | 2 cut(s) | 556, 904 |
| StyI | CCWWGG | 3 cut(s) | 304, 423, 999 |
| TaaI | ACNGT | 5 cut(s) | 600, 679, 1221, 1561, 1572 |
| TatI | WGTACW | 1 cut(s) | 738 |
| TauI | GCSGC | 1 cut(s) | 372 |
| TfiI | GAWTC | 2 cut(s) | 638, 782 |
| Tru1I | TTAA | 4 cut(s) | 758, 843, 1344, 1719 |
| Tru9I | TTAA | 4 cut(s) | 758, 843, 1344, 1719 |
| TscAI | CASTG | 3 cut(s) | 661, 1077, 1166 |
| TseFI | GTSAC | 2 cut(s) | 28, 900 |
| TseI | GCWGC | 3 cut(s) | 1388, 1475, 1723 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 900 |
| TspDTI | ATGAA | 7 cut(s) | 17, 255, 411, 758, 1133, 1418, 1532 |
| TspGWI | ACGGA | 2 cut(s) | 1130, 1258 |
| TspRI | CASTG | 3 cut(s) | 661, 1077, 1166 |
| Tth111I | GACNNNGTC | 1 cut(s) | 928 |
| Vha464I | CTTAAG | 1 cut(s) | 1343 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1445 |
| XapI | RAATTY | 4 cut(s) | 343, 609, 833, 1321 |
| XceI | RCATGY | 1 cut(s) | 1496 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1356 |
| XmiI | GTMKAC | 1 cut(s) | 573 |
| XmnI | GAANNNNTTC | 1 cut(s) | 833 |
| XspI | CTAG | 7 cut(s) | 293, 966, 984, 1065, 1179, 1292, 1529 |