Rmu_co8420029.1_g000001

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8420029.1
OG0010969
Physical Location & Seq
Reverse (-)
1 .. 1311
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8420029.1_g000001.1.cds

Sequence Viewer

Length: 798 bp
atgagtgatattcagacgaggcatcatcggagatggacgtcggattctaatctccggaatccgatttcggcagagagctctccgaaaatgaacaagtttaacctgaaaaatgtgatcaagagggctaattcgttgaccgggtcaaagttcgggacgacgcagtgggcattgtcgccgggaaggagcgtggcgcagccggggtcggcggagagtttggggaagtcgacgtcgttttcgagcttgaagcctccgacgagtccttcgaaaagtaagggagtggagaagttgctcaatatggggttcgacttgttcaagagtaaaaaatcttcatcatctactaggtcactggtgaggtctaattccgggtatggtgtgaccgataccggtcatcaactccggatgcttcagaacagattgatgcaatggcggtacgcaaatgcaagagctgaaactgtgaatggcaatgttgctgatcaagcacagtttgagccattggaagcttggggagatatggaaaggcaacatatgggagcagtttctatgttgaaagagagcttacattctgttgtgtgcagagtgcctctcactgaaggtgcaaaggtggatactcaatcagccgccatcaatcttcgaaatgcttcagattactcagcctccattaagttgatattggctacatttgccccctcggctgagcagactagtgtgttgctctcagaattagcagaggttgttgcgcaagaaaagttgctttctgatgagtgtcttgagctctgtagaaccatatcagaactagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

266

Amino Acids

29.17

Weight (kDa)

9.38

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 41, 230
Acc16I TGCGCA 1 cut(s) 738
AccI GTMKAC 1 cut(s) 224
AccIII TCCGGA 2 cut(s) 54, 396
AciI CCGC 3 cut(s) 206, 427, 618
AcuI CTGAAG 3 cut(s) 389, 609, 624
AcyI GRCGYC 2 cut(s) 38, 227
AfaI GTAC 1 cut(s) 431
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 244, 313, 547
AhlI ACTAGT 1 cut(s) 701
AluBI AGCT 6 cut(s) 78, 240, 446, 500, 555, 772
AluI AGCT 6 cut(s) 78, 240, 446, 500, 555, 772
Alw21I GWGCWC 2 cut(s) 80, 774
Aor13HI TCCGGA 2 cut(s) 54, 396
ApeKI GCWGC 1 cut(s) 193
ArsI GACNNNNNNTTYG 4 cut(s) 217, 244, 249, 276
AsiGI ACCGGT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 637
AspLEI GCGC 2 cut(s) 193, 739
AsuC2I CCSGG 4 cut(s) 139, 177, 198, 364
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 2 cut(s) 263, 631
BanII GRGCYC 2 cut(s) 80, 774
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
Bbv12I GWGCWC 2 cut(s) 80, 774
BbvI GCAGC 1 cut(s) 205
BccI CCATC 2 cut(s) 27, 629
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 2 cut(s) 114, 472
BcnI CCSGG 4 cut(s) 139, 177, 198, 364
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 339, 702, 794
BfmI CTRYAG 1 cut(s) 775
BfuI GTATCC 1 cut(s) 598
BglI GCCNNNNNGGC 1 cut(s) 689
BisI GCNGC 2 cut(s) 194, 618
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 2 cut(s) 195, 619
Bme1390I CCNGG 4 cut(s) 139, 177, 198, 364
BmrFI CCNGG 4 cut(s) 139, 177, 198, 364
BmsI GCATC 3 cut(s) 31, 390, 408
BplI GAGNNNNNCTC 2 cut(s) 567, 599
Bpu1102I GCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 2 cut(s) 263, 631
BpuEI CTTGAG 1 cut(s) 788
BpuMI CCSGG 4 cut(s) 139, 177, 198, 364
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 2 cut(s) 38, 227
BsaJI CCNNGG 2 cut(s) 197, 687
BsaWI WCCGGW 3 cut(s) 54, 383, 396
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 428, 469
Bse8I GATNNNNATC 1 cut(s) 48
BseAI TCCGGA 2 cut(s) 54, 396
BseDI CCNNGG 2 cut(s) 197, 687
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 48
BseMI GCAATG 2 cut(s) 428, 469
BseMII CTCAG 3 cut(s) 663, 684, 729
BseNI ACTGG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 592
BshTI ACCGGT 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 80, 774
BsiSI CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
Bsp119I TTCGAA 2 cut(s) 263, 631
Bsp1286I GDGCHC 2 cut(s) 80, 774
Bsp13I TCCGGA 2 cut(s) 54, 396
Bsp143I GATC 2 cut(s) 114, 472
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 3 cut(s) 206, 427, 618
BspCNI CTCAG 3 cut(s) 662, 685, 728
BspEI TCCGGA 2 cut(s) 54, 396
BspT104I TTCGAA 2 cut(s) 263, 631
BsrDI GCAATG 2 cut(s) 428, 469
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 197, 687
BssMI GATC 2 cut(s) 114, 472
BssNI GRCGYC 2 cut(s) 38, 227
Bst4CI ACNGT 2 cut(s) 454, 483
BstACI GRCGYC 2 cut(s) 38, 227
BstBI TTCGAA 2 cut(s) 263, 631
BstDEI CTNAG 3 cut(s) 649, 693, 715
BstF5I GGATG 1 cut(s) 405
BstHHI GCGC 2 cut(s) 193, 739
BstKTI GATC 2 cut(s) 117, 475
BstMBI GATC 2 cut(s) 114, 472
BstMWI GCNNNNNNNGC 3 cut(s) 476, 680, 689
BstSCI CCNGG 4 cut(s) 137, 175, 196, 362
BstSFI CTRYAG 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 205
BsuI GTATCC 1 cut(s) 598
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 3 cut(s) 167, 344, 585
CfoI GCGC 2 cut(s) 193, 739
Cfr10I RCCGGY 1 cut(s) 383
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 430
CspAI ACCGGT 1 cut(s) 383
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 3 cut(s) 649, 693, 715
DpnI GATC 2 cut(s) 116, 474
DpnII GATC 2 cut(s) 114, 472
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 2 cut(s) 78, 772
Eco24I GRGCYC 2 cut(s) 80, 774
Eco53kI GAGCTC 2 cut(s) 78, 772
Eco57I CTGAAG 3 cut(s) 389, 609, 624
EcoICRI GAGCTC 2 cut(s) 78, 772
EcoT38I GRGCYC 2 cut(s) 80, 774
FaiI YATR 7 cut(s) 296, 369, 512, 525, 527, 542, 785
FaqI GGGAC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 525
FbaI TGATCA 2 cut(s) 114, 472
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 194, 618
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 2 cut(s) 80, 774
Fsp4HI GCNGC 2 cut(s) 194, 618
FspBI CTAG 3 cut(s) 339, 702, 794
FspI TGCGCA 1 cut(s) 738
GlaI GCGC 2 cut(s) 192, 738
GluI GCNGC 2 cut(s) 194, 618
HapII CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
HgaI GACGC 1 cut(s) 166
HhaI GCGC 2 cut(s) 193, 739
Hin1I GRCGYC 2 cut(s) 38, 227
Hin6I GCGC 2 cut(s) 191, 737
HinP1I GCGC 2 cut(s) 191, 737
HincII GTYRAC 2 cut(s) 135, 225
HindII GTYRAC 2 cut(s) 135, 225
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 3 cut(s) 44, 58, 256
HpaII CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 135, 225
Hpy188III TCNNGA 6 cut(s) 55, 118, 151, 313, 397, 767
Hpy8I GTNNAC 2 cut(s) 135, 225
Hpy99I CGWCG 5 cut(s) 43, 160, 229, 232, 256
HpyAV CCTTC 3 cut(s) 174, 270, 584
HpyCH4III ACNGT 2 cut(s) 454, 483
HpyCH4IV ACGT 2 cut(s) 38, 227
HpyCH4V TGCA 4 cut(s) 421, 440, 573, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 476, 680, 689
HpyF3I CTNAG 3 cut(s) 649, 693, 715
HpySE526I ACGT 2 cut(s) 38, 227
Hsp92I GRCGYC 2 cut(s) 38, 227
HspAI GCGC 2 cut(s) 191, 737
Kpn2I TCCGGA 2 cut(s) 54, 396
Ksp22I TGATCA 2 cut(s) 114, 472
Kzo9I GATC 2 cut(s) 114, 472
LmnI GCTCC 2 cut(s) 183, 530
LpnPI CCDG 9 cut(s) 68, 116, 151, 189, 210, 332, 376, 397, 410
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 3 cut(s) 31, 390, 408
MaeI CTAG 3 cut(s) 339, 702, 794
MaeII ACGT 2 cut(s) 38, 227
MaeIII GTNAC 2 cut(s) 342, 373
MalI GATC 2 cut(s) 116, 474
MboI GATC 2 cut(s) 114, 472
MboII GAAGA 2 cut(s) 318, 620
MhlI GDGCHC 2 cut(s) 80, 774
MluCI AATT 3 cut(s) 127, 358, 719
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 21, 275
MnlI CCTC 8 cut(s) 12, 114, 258, 345, 591, 664, 697, 721
MroI TCCGGA 2 cut(s) 54, 396
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 2 cut(s) 99, 660
MspI CCGG 7 cut(s) 55, 138, 176, 197, 363, 384, 397
MspR9I CCNGG 4 cut(s) 139, 177, 198, 364
MwoI GCNNNNNNNGC 3 cut(s) 476, 680, 689
NciI CCSGG 4 cut(s) 139, 177, 198, 364
NdeI CATATG 1 cut(s) 525
NdeII GATC 2 cut(s) 114, 472
NmeAIII GCCGAG 1 cut(s) 668
NmuCI GTSAC 2 cut(s) 342, 373
NsbI TGCGCA 1 cut(s) 738
NspV TTCGAA 2 cut(s) 263, 631
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 260
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 2 cut(s) 44, 58
PflFI GACNNNGTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 2 cut(s) 195, 619
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp124BI GAGCTC 2 cut(s) 80, 774
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SacI GAGCTC 2 cut(s) 80, 774
SalI GTCGAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 99, 660
SatI GCNGC 2 cut(s) 194, 618
Sau3AI GATC 2 cut(s) 114, 472
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 4 cut(s) 139, 177, 198, 364
SduI GDGCHC 2 cut(s) 80, 774
SfaNI GCATC 3 cut(s) 31, 390, 408
SfcI CTRYAG 1 cut(s) 775
SfuI TTCGAA 2 cut(s) 263, 631
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 3 cut(s) 127, 358, 719
SsiI CCGC 3 cut(s) 206, 427, 618
SspMI CTAG 3 cut(s) 339, 702, 794
SstI GAGCTC 2 cut(s) 80, 774
StyD4I CCNGG 4 cut(s) 137, 175, 196, 362
TaaI ACNGT 2 cut(s) 454, 483
TaiI ACGT 2 cut(s) 41, 230
TaqI TCGA 5 cut(s) 224, 236, 263, 303, 631
TaqII GACCGA 1 cut(s) 392
TasI AATT 3 cut(s) 127, 358, 719
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 2 cut(s) 44, 58
Tru1I TTAA 2 cut(s) 99, 660
Tru9I TTAA 2 cut(s) 99, 660
TscAI CASTG 3 cut(s) 167, 351, 592
TseFI GTSAC 2 cut(s) 342, 373
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 2 cut(s) 342, 373
TspDTI ATGAA 2 cut(s) 104, 318
TspRI CASTG 3 cut(s) 167, 351, 592
Tth111I GACNNNGTC 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 3 cut(s) 339, 702, 794
ZraI GACGTC 2 cut(s) 39, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.