Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

9011344 .. 9013963

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAAACGACCAAGAGGATCTTGAATTGCTTCTGTCTCTTGACGATAGGGTTCTCGAAACTCCTCCTGGTTCTCCTTCTGCTGCACCCGGATATCTCACGGATGATGAATCCCCCAAGCGTAGGGGTCACTCTGACTTGTCTGACTTCAGAAGTGTTGTTCAAGATTGCATTGACTATAATCCTAAACCAATCGCCAAAAACACTAAACCCAAAGGCTCCAACAACTCCAATACCAATGACATTGAGAAGTTTTCTGGCTTGCGCATTAGGAATCAATTACTTAGCCCTGCAGAGATAAGTGATCTGTTTTCAGATATCCGTTTCGTTCGATTGCCAACAATAAAGAACTTGCTAATGGGTGACAAACTCTCTGGCTGCTGGGCGACAATGGGAGTGATAACAGAGAAAGGACAACCCAAAACAAGCTCCATTGGGCAGGCTTATGGTATATGGAAGATCGGTAGCTTAAATGAAAACAATGTCTCCTTGTTCTTGTTTGGTGATGCTTACAAAAAGAATGAGACAGAAAAGGCAGGAACGGTTTTCGGTCTGTTTAATTGCTCACTTCGCAAGGACAATGGGGGACGTGAGTTCTCATTGAGTGTCAACTCTGCTAAACAAATGGTTAAACTGGGGGTTTCAGCTGATTATGGAGTCTGCACAGCAAAGCGGAAAGATGGAACAACTTGTACATCTGTTGTAAACAAGCGCCAAGGAGCATTCTGCAAGATTCATAAACTGAATGCATCAGACAAATTTGCTACAATGAGAACTGAACTCAAAGGAGGGAACTTGAGAACAGCGTTCAGAGATCTAAAATCGCAAGGGATTTACACAGTTGAGCCACCAGCAGATAGAAGCGGAAACAAAAAGACCACTCAGCCTGTTCGAGTGCTATCAGTGGAAGGTCTCCGAAAGGCTCTAAGTGGCGCGGATAAAGTGACCCCTAATGTACACTCACAAGGAATACGTTTCTTGAACGAGATGGCCAGACAAAAGGCATCAAAGAACGTAAACAAGAAATCTGAAGCTGTGAATAAGTCGACAGAGAAGAGGAAAGCATCAACGAAAGAAACACAAGTAAATGGTGAGCCAAAGAGAAAGAAAACAGAGCACAGGAAGGAAACTCCCGAGATTTCCACCGGAAAAATGATGCTCCTAGATTTCTGCAGCTCTGACGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

396

Amino Acids

43.71

Weight (kDa)

9.41

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	84 - 210	1.8e-53	MCM10 OB-fold
zf-primase	PF09329	213 - 257	4.1e-14	Primase zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	1046
AccII	CGCG	1 cut(s)	935
AciI	CCGC	3 cut(s)	673, 864, 935
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	133, 1050
AfaI	GTAC	2 cut(s)	694, 957
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	26, 164, 982
AjiI	CACGTC	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	5 cut(s)	429, 468, 647, 1034, 1176
AluI	AGCT	5 cut(s)	429, 468, 647, 1034, 1176
Alw21I	GWGCWC	1 cut(s)	1119
Alw26I	GTCTC	4 cut(s)	42, 490, 518, 917
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	1133
AoxI	GGCC	1 cut(s)	990
ApeKI	GCWGC	3 cut(s)	83, 378, 1173
ApoI	RAATTY	1 cut(s)	758
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	267, 714, 935
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	374, 515, 1103
AvaI	CYCGRG	1 cut(s)	1133
BalI	TGGCCA	1 cut(s)	992
Bbv12I	GWGCWC	1 cut(s)	1119
BbvI	GCAGC	3 cut(s)	70, 365, 1185
BccI	CCATC	2 cut(s)	674, 982
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	4 cut(s)	42, 490, 518, 917
BfaI	CTAG	1 cut(s)	1163
BfmI	CTRYAG	2 cut(s)	291, 1171
BfoI	RGCGCY	1 cut(s)	715
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	3 cut(s)	84, 379, 1174
BlsI	GCNGC	3 cut(s)	85, 380, 1175
Bme1390I	CCNGG	2 cut(s)	69, 90
BmeT110I	CYCGRG	1 cut(s)	1133
BmgBI	CACGTC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	69, 90
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	5 cut(s)	496, 758, 1013, 1073, 1146
BmuI	ACTGGG	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	1 cut(s)	715
BsaWI	WCCGGW	1 cut(s)	1145
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	70, 365, 1185
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	2 cut(s)	69, 646
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	1119
BsiHKCI	CYCGRG	1 cut(s)	1133
BsiSI	CCGG	2 cut(s)	90, 1146
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	4 cut(s)	42, 490, 518, 917
BsmFI	GGGAC	1 cut(s)	600
BsmI	GAATGC	2 cut(s)	722, 751
BsnI	GGCC	1 cut(s)	992
Bso31I	GGTCTC	1 cut(s)	917
BsoBI	CYCGRG	1 cut(s)	1133
Bsp1286I	GDGCHC	1 cut(s)	1119
Bsp1407I	TGTACA	2 cut(s)	692, 955
Bsp143I	GATC	4 cut(s)	19, 304, 459, 814
BspACI	CCGC	3 cut(s)	673, 864, 935
BspANI	GGCC	1 cut(s)	992
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	2 cut(s)	295, 1175
BspPI	GGATC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	917
BsrGI	TGTACA	2 cut(s)	692, 955
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	4 cut(s)	19, 304, 459, 814
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	544, 841
Bst6I	CTCTTC	1 cut(s)	1049
BstAUI	TGTACA	2 cut(s)	692, 955
BstC8I	GCNNGC	2 cut(s)	263, 441
BstDEI	CTNAG	3 cut(s)	284, 882, 926
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	935
BstH2I	RGCGCY	1 cut(s)	715
BstHHI	GCGC	3 cut(s)	267, 714, 935
BstKTI	GATC	4 cut(s)	22, 307, 462, 817
BstMAI	GTCTC	4 cut(s)	42, 490, 518, 917
BstMBI	GATC	4 cut(s)	19, 304, 459, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	67, 88
BstSFI	CTRYAG	2 cut(s)	291, 1171
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	3 cut(s)	70, 365, 1185
BstX2I	RGATCY	2 cut(s)	19, 814
BstYI	RGATCY	2 cut(s)	19, 814
BsuRI	GGCC	1 cut(s)	992
BtrI	CACGTC	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	909
Cac8I	GCNNGC	2 cut(s)	263, 441
CfoI	GCGC	3 cut(s)	267, 714, 935
Csp6I	GTAC	2 cut(s)	693, 956
CviQI	GTAC	2 cut(s)	693, 956
DdeI	CTNAG	3 cut(s)	284, 882, 926
DpnI	GATC	4 cut(s)	21, 306, 461, 816
DpnII	GATC	4 cut(s)	19, 304, 459, 814
EaeI	YGGCCR	1 cut(s)	990
Eam1104I	CTCTTC	1 cut(s)	1049
EarI	CTCTTC	1 cut(s)	1049
Eco130I	CCWWGG	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	917
Eco32I	GATATC	2 cut(s)	95, 319
Eco57I	CTGAAG	2 cut(s)	133, 1050
Eco88I	CYCGRG	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	67
EcoRV	GATATC	2 cut(s)	95, 319
EcoT14I	CCWWGG	1 cut(s)	715
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	715
FaiI	YATR	6 cut(s)	180, 447, 452, 454, 654, 738
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	3 cut(s)	84, 379, 1174
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	84, 379, 1174
FspBI	CTAG	1 cut(s)	1163
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	3 cut(s)	266, 713, 934
GluI	GCNGC	3 cut(s)	84, 379, 1174
GsaI	CCCAGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	715
HaeIII	GGCC	1 cut(s)	992
HapII	CCGG	2 cut(s)	90, 1146
HhaI	GCGC	3 cut(s)	267, 714, 935
Hin6I	GCGC	3 cut(s)	265, 712, 933
HinP1I	GCGC	3 cut(s)	265, 712, 933
HincII	GTYRAC	2 cut(s)	610, 1047
HindII	GTYRAC	2 cut(s)	610, 1047
HinfI	GANTC	4 cut(s)	110, 274, 657, 733
HpaII	CCGG	2 cut(s)	90, 1146
HphI	GGTGA	3 cut(s)	374, 515, 1103
Hpy166II	GTNNAC	5 cut(s)	610, 706, 958, 1018, 1047
Hpy188I	TCNGA	9 cut(s)	136, 145, 152, 316, 754, 812, 917, 1030, 1180
Hpy188III	TCNNGA	6 cut(s)	23, 41, 56, 164, 979, 1133
Hpy8I	GTNNAC	5 cut(s)	610, 706, 958, 1018, 1047
HpyAV	CCTTC	3 cut(s)	87, 902, 1117
HpyCH4III	ACNGT	2 cut(s)	544, 841
HpyCH4IV	ACGT	3 cut(s)	589, 973, 1014
HpyCH4V	TGCA	7 cut(s)	86, 171, 293, 663, 729, 749, 1173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	3 cut(s)	284, 882, 926
HpySE526I	ACGT	3 cut(s)	589, 973, 1014
HspAI	GCGC	3 cut(s)	265, 712, 933
Kzo9I	GATC	4 cut(s)	19, 304, 459, 814
LmnI	GCTCC	4 cut(s)	224, 434, 719, 1164
Lsp1109I	GCAGC	3 cut(s)	70, 365, 1185
LweI	GCATC	5 cut(s)	496, 758, 1013, 1073, 1146
MaeI	CTAG	1 cut(s)	1163
MaeII	ACGT	3 cut(s)	589, 973, 1014
MaeIII	GTNAC	3 cut(s)	128, 362, 943
MalI	GATC	4 cut(s)	21, 306, 461, 816
MboI	GATC	4 cut(s)	19, 304, 459, 814
MboII	GAAGA	2 cut(s)	469, 1066
MflI	RGATCY	2 cut(s)	19, 814
MhlI	GDGCHC	1 cut(s)	1119
MlsI	TGGCCA	1 cut(s)	992
MluCI	AATT	4 cut(s)	26, 278, 559, 758
MluNI	TGGCCA	1 cut(s)	992
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	10, 75, 782, 1050
Mox20I	TGGCCA	1 cut(s)	992
Mph1103I	ATGCAT	1 cut(s)	751
MroXI	GAANNNNTTC	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	992
MseI	TTAA	3 cut(s)	470, 558, 630
Msp20I	TGGCCA	1 cut(s)	992
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	90, 1146
MspR9I	CCNGG	2 cut(s)	69, 90
Mva1269I	GAATGC	2 cut(s)	722, 751
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	1 cut(s)	570
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	19, 304, 459, 814
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	3 cut(s)	128, 362, 943
NsbI	TGCGCA	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	751
PctI	GAATGC	2 cut(s)	722, 751
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	110, 274, 733
PkrI	GCNGC	3 cut(s)	85, 380, 1175
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PstI	CTGCAG	2 cut(s)	295, 1175
PsuI	RGATCY	2 cut(s)	19, 814
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	694, 957
RsaNI	GTAC	2 cut(s)	693, 956
SalI	GTCGAC	1 cut(s)	1045
SaqAI	TTAA	3 cut(s)	470, 558, 630
SatI	GCNGC	3 cut(s)	84, 379, 1174
Sau3AI	GATC	4 cut(s)	19, 304, 459, 814
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	2 cut(s)	69, 90
SduI	GDGCHC	1 cut(s)	1119
SetI	ASST	9 cut(s)	431, 470, 592, 649, 913, 976, 1017, 1036, 1178
SfaNI	GCATC	5 cut(s)	496, 758, 1013, 1073, 1146
SfcI	CTRYAG	2 cut(s)	291, 1171
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	4 cut(s)	26, 278, 559, 758
SsiI	CCGC	3 cut(s)	673, 864, 935
SspMI	CTAG	1 cut(s)	1163
StyD4I	CCNGG	2 cut(s)	67, 88
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	2 cut(s)	544, 841
TaiI	ACGT	3 cut(s)	592, 976, 1017
TaqI	TCGA	4 cut(s)	57, 331, 892, 1046
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	4 cut(s)	26, 278, 559, 758
TatI	WGTACW	2 cut(s)	692, 955
TfiI	GAWTC	3 cut(s)	110, 274, 733
Tru1I	TTAA	3 cut(s)	470, 558, 630
Tru9I	TTAA	3 cut(s)	470, 558, 630
TscAI	CASTG	1 cut(s)	909
TseFI	GTSAC	3 cut(s)	128, 362, 943
TseI	GCWGC	3 cut(s)	83, 378, 1173
Tsp45I	GTSAC	3 cut(s)	128, 362, 943
TspDTI	ATGAA	3 cut(s)	123, 489, 725
TspGWI	ACGGA	2 cut(s)	116, 311
TspRI	CASTG	1 cut(s)	909
XapI	RAATTY	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	30
XspI	CTAG	1 cut(s)	1163
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.