Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Forward (+)

65822638 .. 65825494

Gene Structure 2857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTCAAACCGCGAAGACGACGACCTTGACCTCCTTCTCTCCCTGCAAGACAGGGTTTTGGAAACCCCTCCTGCCTCTCCTTCACGTTCCCCAGACTCAAGGTATCTTTCCGACGACGATGAGTTGTCCCGCCGAAGAGGGCCGCCGGACATGTCCGTGTTCAGGGATGCTGTTCAGGACTGCCTCGATTACGATCACAAATCGGCACAGAAGACCATCAAATCCAAGCAAATCAGTTCCTCCAATGATTCAGAGGTTGAGAAATATTCGGGTTTGCGAATAAGGAAGCAGTTGCTAACTCCTTCAGAGCTCAAGGATCGGTTTTCAGACATCCGTTTTGTTCGGTTACCCAATATAAAGAACTCTCTGGTTGGGGAAACTCTTTCAGGATGTTGGGCAACTGTGGGAGTGTTGACTGAGAAGGGGACTAAAAGAGCTAGTTCCACAGGGAAGAGCTATTCGATATACAAATTCGGGTGTTTGGAGGAAGATACCGTTTCTGTTTTCTTGTTTGGTGATGCTTATGAGAGGAACTGCAATGAGCAGGTCGGAATGGTGTTTGCACTGTTTAATTGTAGCGTACGCAAGGATGCTAAGGGTGCTGGTTTTTCTTTGAGCGTGTTTTCAGCCAATCAAATTGTGAAGATAGGAACTTCAGTTGATTATGGAGTTTGCAGAGGGAAAAGGAAGGATGGAATGGCTTGTAGTTTAGTCATAAATAAGCGCCAAGGAATATATTGTAAATTTCATAGATCGAAAGAATCACAGAAATATTCCACTATGCGAACTGAGCTCAAGGGAGGGAATTTGAGAACAGGATTTCGGAACCCGTACCAGCCAGAAGGAGTTTTTATGGTCGATCCTCTAGTTGACAGAACAAACTCGAACAAGCGTAAGCAGCCGGTGAAGCTATTGTCTGTGGAAGGGCTTAAGAAGGCATTAAGTAAAGCAGATAAAGTGACTACAAATACACACTCACAAGGAATAAGGTTTTTGGCCAAGGTCACAGGGACGACAGATCCAAATGATGTGATTAAAGAGACAACAATGCAAAAGAAACAAATATCCAGCTTAGAGAAGAGGAAATCGTCTACCACAAGCATGGGTTCATCTGCAGTCATCAAAAACCAGCAAGTAGATGCAAAAAGAATGAAAACCGGAAAGGACAATAGTCTGGCAGACAAATCAAAGCTGGGCACTGGAAAGATGATTGAATTAGATTACTATATTAGCTCGGATGAAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

417

Amino Acids

46.42

Weight (kDa)

9.37

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	88 - 214	1.7e-52	MCM10 OB-fold
zf-primase	PF09329	217 - 262	6.9e-14	Primase zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	1091
AccII	CGCG	1 cut(s)	12
AciI	CCGC	3 cut(s)	10, 130, 143
AclWI	GGATC	3 cut(s)	324, 854, 1013
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	470, 743, 805
AcuI	CTGAAG	2 cut(s)	288, 639
AfaI	GTAC	2 cut(s)	582, 833
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflII	CTTAAG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	1214
AluBI	AGCT	8 cut(s)	310, 437, 456, 793, 910, 1071, 1192, 1233
AluI	AGCT	8 cut(s)	310, 437, 456, 793, 910, 1071, 1192, 1233
Alw21I	GWGCWC	2 cut(s)	312, 795
Alw26I	GTCTC	1 cut(s)	1034
AlwI	GGATC	3 cut(s)	324, 854, 1013
AoxI	GGCC	2 cut(s)	140, 996
ApeKI	GCWGC	1 cut(s)	898
ApoI	RAATTY	3 cut(s)	470, 743, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	527, 916
BaeGI	GKGCMC	1 cut(s)	1199
BalI	TGGCCA	1 cut(s)	998
BanII	GRGCYC	2 cut(s)	312, 795
BbsI	GAAGAC	2 cut(s)	21, 218
Bbv12I	GWGCWC	2 cut(s)	312, 795
BbvI	GCAGC	1 cut(s)	910
BccI	CCATC	2 cut(s)	224, 686
BcoDI	GTCTC	1 cut(s)	1034
BfaI	CTAG	2 cut(s)	438, 866
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	727
BfrI	CTTAAG	1 cut(s)	929
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	143, 899
BlsI	GCNGC	2 cut(s)	144, 900
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	827
BmsI	GCATC	4 cut(s)	157, 508, 580, 1129
BoxI	GACNNNNGTC	1 cut(s)	1170
BpiI	GAAGAC	2 cut(s)	21, 218
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	82, 296, 779
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	727, 999
BsaWI	WCCGGW	1 cut(s)	1157
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	901
Bse1I	ACTGG	1 cut(s)	1204
Bse3DI	GCAATG	1 cut(s)	544
Bse8I	GATNNNNATC	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	727, 999
BseGI	GGATG	6 cut(s)	172, 330, 395, 595, 697, 1243
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	408, 780
BseNI	ACTGG	1 cut(s)	1204
BseSI	GKGCMC	1 cut(s)	1199
BseXI	GCAGC	1 cut(s)	910
BseYI	CCCAGC	1 cut(s)	1192
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	142, 998
BsiHKAI	GWGCWC	2 cut(s)	312, 795
BsiSI	CCGG	3 cut(s)	146, 902, 1158
BsiWI	CGTACG	1 cut(s)	580
BslFI	GGGAC	3 cut(s)	112, 439, 1024
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	1034
BsmFI	GGGAC	3 cut(s)	112, 439, 1024
BsnI	GGCC	2 cut(s)	142, 998
Bsp1286I	GDGCHC	3 cut(s)	312, 795, 1199
Bsp143I	GATC	5 cut(s)	193, 316, 752, 859, 1018
BspACI	CCGC	3 cut(s)	10, 130, 143
BspANI	GGCC	2 cut(s)	142, 998
BspCNI	CTCAG	2 cut(s)	409, 781
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	827
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	3 cut(s)	324, 854, 1013
BspQI	GCTCTTC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	901
BsrI	ACTGG	1 cut(s)	1204
BssAI	RCCGGY	1 cut(s)	901
BssECI	CCNNGG	2 cut(s)	727, 999
BssMI	GATC	5 cut(s)	193, 316, 752, 859, 1018
BssT1I	CCWWGG	2 cut(s)	727, 999
Bst4CI	ACNGT	3 cut(s)	403, 496, 567
Bst6I	CTCTTC	4 cut(s)	130, 446, 1073, 1236
BstAFI	CTTAAG	1 cut(s)	929
BstDEI	CTNAG	4 cut(s)	417, 594, 789, 1072
BstEII	GGTNACC	1 cut(s)	345
BstF5I	GGATG	6 cut(s)	172, 330, 395, 595, 697, 1243
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	5 cut(s)	196, 319, 755, 862, 1021
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	5 cut(s)	193, 316, 752, 859, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	599, 790, 898, 907
BstNSI	RCATGY	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	1170
BstPI	GGTNACC	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	1113
BstSLI	GKGCMC	1 cut(s)	1199
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	910
BstV2I	GAAGAC	2 cut(s)	21, 218
BstX2I	RGATCY	1 cut(s)	1018
BstXI	CCANNNNNNTGG	1 cut(s)	1102
BstYI	RGATCY	1 cut(s)	1018
BsuRI	GGCC	2 cut(s)	142, 998
BtsCI	GGATG	6 cut(s)	172, 330, 395, 595, 697, 1243
BtsIMutI	CAGTG	2 cut(s)	563, 1197
BveI	ACCTGC	1 cut(s)	535
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	901
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	581, 832
CviAII	CATG	2 cut(s)	151, 1102
CviQI	GTAC	2 cut(s)	581, 832
DdeI	CTNAG	4 cut(s)	417, 594, 789, 1072
DpnI	GATC	5 cut(s)	195, 318, 754, 861, 1020
DpnII	GATC	5 cut(s)	193, 316, 752, 859, 1018
EaeI	YGGCCR	1 cut(s)	996
Eam1104I	CTCTTC	4 cut(s)	130, 446, 1073, 1236
EarI	CTCTTC	4 cut(s)	130, 446, 1073, 1236
Ecl136II	GAGCTC	2 cut(s)	310, 793
Eco130I	CCWWGG	2 cut(s)	727, 999
Eco24I	GRGCYC	2 cut(s)	312, 795
Eco53kI	GAGCTC	2 cut(s)	310, 793
Eco57I	CTGAAG	2 cut(s)	288, 639
Eco91I	GGTNACC	1 cut(s)	345
EcoICRI	GAGCTC	2 cut(s)	310, 793
EcoO65I	GGTNACC	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	727, 999
EcoT38I	GRGCYC	2 cut(s)	312, 795
ErhI	CCWWGG	2 cut(s)	727, 999
FaeI	CATG	2 cut(s)	154, 1105
FaqI	GGGAC	3 cut(s)	112, 439, 1024
FatI	CATG	2 cut(s)	150, 1101
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	1091
Fnu4HI	GCNGC	2 cut(s)	143, 899
FokI	GGATG	5 cut(s)	179, 317, 402, 602, 704
FriOI	GRGCYC	2 cut(s)	312, 795
Fsp4HI	GCNGC	2 cut(s)	143, 899
FspBI	CTAG	2 cut(s)	438, 866
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	2 cut(s)	143, 899
GsaI	CCCAGC	1 cut(s)	1196
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	2 cut(s)	142, 998
HapII	CCGG	3 cut(s)	146, 902, 1158
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	2 cut(s)	154, 1105
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HincII	GTYRAC	2 cut(s)	414, 871
HindII	GTYRAC	2 cut(s)	414, 871
HinfI	GANTC	3 cut(s)	95, 248, 761
HpaII	CCGG	3 cut(s)	146, 902, 1158
HphI	GGTGA	2 cut(s)	527, 916
Hpy166II	GTNNAC	3 cut(s)	414, 871, 1092
Hpy188I	TCNGA	7 cut(s)	112, 253, 307, 328, 551, 825, 1237
Hpy188III	TCNNGA	2 cut(s)	176, 387
Hpy8I	GTNNAC	3 cut(s)	414, 871, 1092
Hpy99I	CGWCG	3 cut(s)	23, 116, 119
HpyAV	CCTTC	8 cut(s)	44, 90, 312, 415, 682, 836, 917, 928
HpyCH4III	ACNGT	3 cut(s)	403, 496, 567
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	7 cut(s)	46, 537, 563, 675, 1051, 1115, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	599, 790, 898, 907
HpyF3I	CTNAG	4 cut(s)	417, 594, 789, 1072
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	154, 1105
HspAI	GCGC	1 cut(s)	724
Kzo9I	GATC	5 cut(s)	193, 316, 752, 859, 1018
LguI	GCTCTTC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	910
LweI	GCATC	4 cut(s)	157, 508, 580, 1129
MaeI	CTAG	2 cut(s)	438, 866
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	3 cut(s)	345, 958, 1003
MalI	GATC	5 cut(s)	195, 318, 754, 861, 1020
MboI	GATC	5 cut(s)	193, 316, 752, 859, 1018
MboII	GAAGA	7 cut(s)	26, 147, 223, 463, 500, 655, 1090
MflI	RGATCY	1 cut(s)	1018
MhlI	GDGCHC	3 cut(s)	312, 795, 1199
MlsI	TGGCCA	1 cut(s)	998
MluCI	AATT	6 cut(s)	470, 571, 636, 743, 805, 1214
MluNI	TGGCCA	1 cut(s)	998
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	135, 529
Mox20I	TGGCCA	1 cut(s)	998
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	4 cut(s)	570, 930, 941, 1035
MslI	CAYNNNNRTG	2 cut(s)	155, 1100
Msp20I	TGGCCA	1 cut(s)	998
MspCI	CTTAAG	1 cut(s)	929
MspI	CCGG	3 cut(s)	146, 902, 1158
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	599, 790, 898, 907
NdeII	GATC	5 cut(s)	193, 316, 752, 859, 1018
NlaIII	CATG	2 cut(s)	154, 1105
NlaIV	GGNNCC	1 cut(s)	827
NmuCI	GTSAC	2 cut(s)	958, 1003
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	248, 761
Pfl23II	CGTACG	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	144, 900
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	150
PshAI	GACNNNNGTC	1 cut(s)	1170
Psp124BI	GAGCTC	2 cut(s)	312, 795
PspEI	GGTNACC	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	1192
PspLI	CGTACG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	827
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	1117
PsuI	RGATCY	1 cut(s)	1018
RsaI	GTAC	2 cut(s)	582, 833
RsaNI	GTAC	2 cut(s)	581, 832
RseI	CAYNNNNRTG	2 cut(s)	155, 1100
SacI	GAGCTC	2 cut(s)	312, 795
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	570, 930, 941, 1035
SatI	GCNGC	2 cut(s)	143, 899
Sau3AI	GATC	5 cut(s)	193, 316, 752, 859, 1018
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	3 cut(s)	312, 795, 1199
SfaNI	GCATC	4 cut(s)	157, 508, 580, 1129
SfcI	CTRYAG	1 cut(s)	1113
SmiMI	CAYNNNNRTG	2 cut(s)	155, 1100
SmlI	CTYRAG	4 cut(s)	97, 311, 794, 929
SmoI	CTYRAG	4 cut(s)	97, 311, 794, 929
Sse9I	AATT	6 cut(s)	470, 571, 636, 743, 805, 1214
SsiI	CCGC	3 cut(s)	10, 130, 143
SspI	AATATT	2 cut(s)	266, 773
SspMI	CTAG	2 cut(s)	438, 866
SstI	GAGCTC	2 cut(s)	312, 795
StyI	CCWWGG	2 cut(s)	727, 999
TaaI	ACNGT	3 cut(s)	403, 496, 567
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	5 cut(s)	186, 461, 755, 858, 884
TasI	AATT	6 cut(s)	470, 571, 636, 743, 805, 1214
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	248, 761
Tru1I	TTAA	4 cut(s)	570, 930, 941, 1035
Tru9I	TTAA	4 cut(s)	570, 930, 941, 1035
TscAI	CASTG	2 cut(s)	570, 1204
TseFI	GTSAC	2 cut(s)	958, 1003
TseI	GCWGC	1 cut(s)	898
Tsp45I	GTSAC	2 cut(s)	958, 1003
TspDTI	ATGAA	3 cut(s)	737, 1098, 1166
TspGWI	ACGGA	2 cut(s)	145, 323
TspRI	CASTG	2 cut(s)	570, 1204
Vha464I	CTTAAG	1 cut(s)	929
XapI	RAATTY	3 cut(s)	470, 743, 805
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	1091
XspI	CTAG	2 cut(s)	438, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.