Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

19246670 .. 19247143

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGATTCTGCCCAAGCCCAGCTTCCTCTTCTTCCTTTCTCAACCCGATCTTGTGAACTATCTGGTTGGGGAAACTCTTTCAGGATGTTGGGCAACTGTTGGAGTGTTGACTGAGAAGGGGACTAAAAGAATTAGTTCTACGGGGAAGAGCTATGCGATATACAAATTCGGGTGTTTGGATGAAGATACTGTTTCTGTTTTCTTGTTTGGTGATGCTTATGAGAGGAACTGCAATGAGCCAGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

83

Amino Acids

9.11

Weight (kDa)

5.21

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	15 - 80	2.6e-23	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	164
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	21, 150
AluI	AGCT	2 cut(s)	21, 150
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	221
BmsI	GCATC	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	89, 184
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	239
BseYI	CCCAGC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	97, 190
Bst6I	CTCTTC	2 cut(s)	32, 140
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	89, 184
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	89, 184
BtsIMutI	CAGTG	1 cut(s)	246
CviJI	RGCY	4 cut(s)	16, 21, 150, 238
CviKI_1	RGCY	4 cut(s)	16, 21, 150, 238
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	32, 140
EarI	CTCTTC	2 cut(s)	32, 140
FaiI	YATR	3 cut(s)	153, 160, 219
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	133
FokI	GGATG	2 cut(s)	96, 191
GsaI	CCCAGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	55, 108
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	2 cut(s)	55, 108
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	97, 190
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	31, 47, 66
LweI	GCATC	1 cut(s)	202
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	19, 22, 157, 194
MluCI	AATT	2 cut(s)	129, 164
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	35, 216
MroXI	GAANNNNTTC	1 cut(s)	133
NdeII	GATC	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	46
SetI	ASST	2 cut(s)	23, 152
SfaNI	GCATC	1 cut(s)	202
SgeI	CNNG	9 cut(s)	25, 30, 56, 62, 74, 93, 153, 181, 214
Sse9I	AATT	2 cut(s)	129, 164
TaaI	ACNGT	2 cut(s)	97, 190
TasI	AATT	2 cut(s)	129, 164
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.