Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Forward (+)

3831517 .. 3833950

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGGAAGAGCTATGTGATATACAAATTCGGGTGTTTGGATGAAGATACTGTTTCTGTTTTCTTGTTTGGTGATGCTTATGAGAGGAACTGCAATGAGCCAGTTGGAATGGTGTTTGCGCTGTTTAATTGTAGCATACGCAAGGATGCTAAGGGTGCTGGTTTTTCTTTGAGTGTGTTTTCAGCCAATCATATTGTGAAGATCGGAACTTCTGTTGATTATGGAGTTTGCAGAGGGAAAAGAAAGGATGGAAAGGCTTGTACTTTAGTCATAAATAAGCACCATGGAATATATTGTAAATTTCATAGATCGAAAGAATCACAGAAATATTCCACTATGCGAACCGAGCTCAAGGGAGGGAATTTGAGAACAGGATTTCGGAACCCATACCAGCTAGAAGGAGTTTTTATGGTCGATCCTCTAGCTGACAGAACAAACTTGAACGAGCTTAAGCAGCCGGTGAAGCTATTGTCTGTGGAAGGGCTTAAAAAGGCACTAAGTGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

170

Amino Acids

18.87

Weight (kDa)

9.39

Isoelectric Point (pI)

21.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	2 - 66	9.8e-22	MCM10 OB-fold
zf-primase	PF09329	69 - 114	3.1e-14	Primase zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	3 cut(s)	26, 299, 361
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	442
AluBI	AGCT	6 cut(s)	12, 349, 394, 425, 448, 466
AluI	AGCT	6 cut(s)	12, 349, 394, 425, 448, 466
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	26, 299, 361
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	83, 472
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	395, 422
BfrI	CTTAAG	1 cut(s)	449
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	383
BmsI	GCATC	2 cut(s)	64, 136
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	3 cut(s)	46, 151, 253
BseMI	GCAATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	201, 308, 415
Bsp19I	CCATGG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	2
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	3 cut(s)	201, 308, 415
BssT1I	CCWWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	2
BstAFI	CTTAAG	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	150, 497
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	3 cut(s)	46, 151, 253
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	204, 311, 418
BstMBI	GATC	3 cut(s)	201, 308, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 346, 454, 463
BstV1I	GCAGC	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	46, 151, 253
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	284
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	150, 497
DpnI	GATC	3 cut(s)	203, 310, 417
DpnII	GATC	3 cut(s)	201, 308, 415
DraIII	CACNNNGTG	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	287
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	3 cut(s)	53, 158, 260
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	2 cut(s)	395, 422
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	455
HapII	CCGG	1 cut(s)	458
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	83, 472
Hpy188I	TCNGA	2 cut(s)	206, 381
HpyAV	CCTTC	2 cut(s)	392, 473
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	93, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 346, 454, 463
HpyF3I	CTNAG	2 cut(s)	150, 497
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	201, 308, 415
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	5 cut(s)	114, 144, 357, 404, 471
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	2 cut(s)	64, 136
MaeI	CTAG	2 cut(s)	395, 422
MalI	GATC	3 cut(s)	203, 310, 417
MboI	GATC	3 cut(s)	201, 308, 415
MboII	GAAGA	3 cut(s)	19, 56, 211
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	26, 127, 299, 361
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	78, 227, 350, 429
MseI	TTAA	3 cut(s)	126, 450, 486
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	4 cut(s)	155, 346, 454, 463
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	201, 308, 415
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	3 cut(s)	126, 450, 486
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	3 cut(s)	201, 308, 415
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	14, 351, 396, 427, 450, 468
SfaNI	GCATC	2 cut(s)	64, 136
SmlI	CTYRAG	2 cut(s)	350, 449
SmoI	CTYRAG	2 cut(s)	350, 449
Sse9I	AATT	4 cut(s)	26, 127, 299, 361
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	2 cut(s)	395, 422
SstI	GAGCTC	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	311, 414
TasI	AATT	4 cut(s)	26, 127, 299, 361
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	126, 450, 486
Tru9I	TTAA	3 cut(s)	126, 450, 486
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	57, 293
Vha464I	CTTAAG	1 cut(s)	449
XapI	RAATTY	3 cut(s)	26, 299, 361
XspI	CTAG	2 cut(s)	395, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.