Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Forward (+)

45028743 .. 45030092

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGGAAGCAGTTGCTAACTCCTTCAGAGCTCAAGGATCGGTTTTCATACATCCGTTTTGTTCGGTTACCCAATATAAAAGCTAGTTCTATAGGGAAGAGCTATTCGATATACAAATTCGGGTGTTTGGAGGAAGATACCGTTTCTGTTTTCTTGTTTGGTGATGATTATGAGAGGAACTGCAATGAGCAGGCTGGAATGGTGTTTGCACTGTTTAATTGTAGTGTACGCAAGGATGCTAAGAATTTGAGAACAGGATTTCAGAACCCGTACCAGCCGAAAGGAGTTTTTATGGTTGATCCTCTAGCTAACAGAACAAACTCAAACAAGAGTAAGCAACCGGTGAAGCTATTCTATGTGGAAGGGATTAAAAAGGCATTAAAATTATATGTTTTAATCTACTGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

136

Amino Acids

15.8

Weight (kDa)

9.45

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	27 - 82	1.4e-18	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	45, 293
AcsI	RAATTY	2 cut(s)	116, 244
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	2 cut(s)	228, 272
AgeI	ACCGGT	1 cut(s)	340
AluBI	AGCT	5 cut(s)	31, 83, 102, 308, 349
AluI	AGCT	5 cut(s)	31, 83, 102, 308, 349
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	45, 293
ApoI	RAATTY	2 cut(s)	116, 244
AsiGI	ACCGGT	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	173, 355
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	84, 305, 409
BfmI	CTRYAG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	51, 241
BseMI	GCAATG	1 cut(s)	190
BshTI	ACCGGT	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	37, 298
BspPI	GGATC	2 cut(s)	45, 293
BspQI	GCTCTTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssMI	GATC	2 cut(s)	37, 298
Bst4CI	ACNGT	2 cut(s)	142, 213
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	240
BstEII	GGTNACC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	51, 241
BstKTI	GATC	2 cut(s)	40, 301
BstMBI	GATC	2 cut(s)	37, 298
BstPI	GGTNACC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	51, 241
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	227, 271
CspAI	ACCGGT	1 cut(s)	340
CviJI	RGCY	7 cut(s)	31, 83, 102, 194, 277, 308, 349
CviKI_1	RGCY	7 cut(s)	31, 83, 102, 194, 277, 308, 349
CviQI	GTAC	2 cut(s)	227, 271
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	39, 300
DpnII	GATC	2 cut(s)	37, 298
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	33
FaiI	YATR	9 cut(s)	49, 77, 92, 112, 171, 293, 357, 388, 390
FokI	GGATG	2 cut(s)	38, 248
FriOI	GRGCYC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	84, 305, 409
HapII	CCGG	1 cut(s)	341
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	173, 355
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	28, 264
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	33, 356
HpyCH4III	ACNGT	2 cut(s)	142, 213
HpyCH4V	TGCA	2 cut(s)	183, 209
HpyF3I	CTNAG	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	37, 298
LguI	GCTCTTC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	176, 180, 240, 287, 354
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	84, 305, 409
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	2 cut(s)	39, 300
MboI	GATC	2 cut(s)	37, 298
MboII	GAAGA	2 cut(s)	109, 146
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	4 cut(s)	116, 217, 244, 383
MnlI	CCTC	3 cut(s)	124, 168, 312
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	4 cut(s)	216, 369, 380, 395
MspI	CCGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	37, 298
PciSI	GCTCTTC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	228, 272
RsaNI	GTAC	2 cut(s)	227, 271
SacI	GAGCTC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	216, 369, 380, 395
Sau3AI	GATC	2 cut(s)	37, 298
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	5 cut(s)	33, 85, 104, 310, 351
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	116, 217, 244, 383
SspMI	CTAG	3 cut(s)	84, 305, 409
SstI	GAGCTC	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	142, 213
TaqI	TCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	116, 217, 244, 383
Tru1I	TTAA	4 cut(s)	216, 369, 380, 395
Tru9I	TTAA	4 cut(s)	216, 369, 380, 395
TscAI	CASTG	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	216
XapI	RAATTY	2 cut(s)	116, 244
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	3 cut(s)	84, 305, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.