Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Reverse (-)

68810380 .. 68815145

Gene Structure 4766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0505100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGACGTCACCCTCCGCCTCCTCCACTTTGCTGGACTCCATCCACGCCTCCCTCGCCGACCTCTGCGCCCCTCACTACGACCACTCCTCCTTCGACCCCCCTCGCCGCTTCTCCGCCTTCGCCCACCGCCTCCAGCTCGCCCTCACCCACCTCACCCGCTCCACCTCCTCACCCGACGCCGCCTTCCCGCCTTCCGTCCTCACCGCCCTCAAGGGCATCGCCGCCGACCTCAGCGCCGCCGTCAAAACGATGTCGTCTTACTCCAAAGGCAAAATCTTCGTCCTCATCCACTGCCTCTCCCTCTGCAAATCCCTCAACGAAAACACCGTCGCCGTCTCCGGCTGGCTCGCCCTCCTCGACTCCGCCGTCGAGGACCTCCCCGATCTCCGCAAAAAAATCGCCGATCTCTCCAGGGACATGAAACAAGCTCAATTCAAAGTCACAGAGAACGAAGAGAGAGTTCACCACACGCTTCGGAAGGAAGGAGAAGCGACGCAGACGAAGACCAGCAAAGCCGTTGAGAGCGCGATTATCATGGATTTGGCTCGAGCTCTCGGAATTGAGCCGGAGAATCACGCCGAGCTGTCCAAGCAAATCAAGGTCCTGAGAAACGACATCGCCGGCTCGAATTCGGCGTCGGAACGCCGGATTTTGGTGTCGTTGGAGAGGATCCTGGAGAATTGGGCCGTGCAGCCCAATTTCGCGACGGGCCTGGAGTTCGAAGACGACGCTCAAATCTCTCCGTTCAAGAATTTTCTGTGTCCGTTGACGAAGGAGGTGATGAGAGACCCGGTGGTACTCCAATCGTCGCAGACGTACGAACGGTCGGCCATTAAGTACTGGTTTGAGCGGTGTTTTGACGACGGCCGAGAACCGACTTGTCCGGTCACCGGTCAGGTGCTTCAGTCATTGGAGCTGAAACCAAATATTGGACTAGCCGGAGCAATTGAGGAGTGGGTGAATAGGAATGTTGAGATTCTGGTCAAAATTGGGGTTCAAAAGCTTAGCGAAGAGCCTTTAATGGTGGATGGTATAGAGGGAGTGTTGGATAATGTTTATAACATCTCAGAAGAGTATCCCCTTTGTAGATTTAGAGTTAGGAATGCTGGCATTGTTGTGCTTATTGTTAAAATGTTGAGGAACAGTTCGAAGAGTATTGGGACTCATTTGAGAAGCAAAGCTCTTGTGGCTTTGGTTAGCATGGCCAAAGATGAAGAAAGCAAGGAAATCATGCTTCAAGAAGGTATCACTAGATTGGCCATACATAGTCTTATAGGGAGTTCAGAGAAAGAGAGAGAGTGTGCTGTGAAATTGTTACTTGAGTTCTCTAGTGATGAAGCTTGTTGCATTAAAATTGCATCAGAGAAAGGTGCTTTGGTTCTTCTCTCAAGCATGGCAGGAAACCTGGAGCATCCTGGTTTATCCAATCTAGCTGAGGAGGTATTAAAGCAGATGGAGAAAGTGGAGGGTATTGTTCAGCATTTGGCCGCAGCAGGGAGATTCAATCCCTTGCTTACTCGACTTTGTGAAGGTTCTGAAAATGTCAAAATTGAGATGGCATCTATAGTGGGAAGTATGACCTTGACGAATAGCAGCAAGGAACAAATAGCTAGGCAATGTGCCAAAATACTAGTTGAGATGCTTTCTAATCCGGAAGGAAGAGCAGCGAGCTTGAAAGCGTTGTATAACTTGTCAGGTCTAGATGACAATGCAACCATCCTTGTTGATTCTGCTGTACTTCCCGCTTTAACAGGTATCCTTTTCATCAACCAGGATACTTCGTTGGAACTGAAAGAGTTGGCTGCATCAACCATGGCAAATATAGTATCAAATCCAGGGCACTGGGAATTGGCTTCAGCTGACAAAGAAGGGAACTCTATGCAGTCAGAATCATTTATATATAATCTTTTGGGGGTTTTACCTCTTGCATCCCTTCCCTGTCAAATATCTATTCTCCATATCCTGTATGGAATTGCCTCATCTCCGCAAGCATCAGAGTCAGTAGCTTGTCATATAAAATCTGGGGAAGGGATTAAAACCATTTTACCATTTCTTGAGCAACCTGAAGTGGAACTCAGAATTCAAGCTTATAGGCTTACAAGACTACTCTCAGAGAGGTTTGGTCAAGATATTGCTGATGAGCTAAGGCCTTGTTACAAGCTTTCCCTGTTGAAAGACAAACTATTAGATGACCAATCGGCAGATAGTGAGAGATCTGATACTGCATGCATACTTGCAAACCTTCCACTCTCGGAAGACGAAGTGAAGACACTCCTAGAAGTTAATTTTGTTAGATGGATAGCTTCTACTCTAAAAAACCAGCACCAAACTTCGAGTGGGAGGAGTATTTCTCGACCTGCATCAAGCATGTTGGAAGGTCTTCTTGGTCTTTTACTTCACATTACAAAGAACCTCAATCCGCAAACTCTTAGTACAGTCAAAGAGCATAGCCTTATTACTATTTTTCATCATCACCTTAATTATCCTTCAAACCCAAGAGTAAAACAACTAGCCATCCTTGGGTTGAAAAACTTGTCTGGATATGGAAGATCAGTAGCCGCTATGCAGTCAGAACCACAACTTCCCCATGGATTATGTTCTCATTTGATGTTCATGTGCGGACGGTCTTCTCTAGAACCTTCCAAGTGTCCGATACACAACATTCCATGCGAAGAAGATAGTCAATTGTGTTTGCTAAAGAGCAATTGCATCAAGCCCCTTGTTGATCTACTCACGGATAACAACACTAGTGTTCAGATTGCTGCAGTGGAGGCACTATCCACTCTAGTAATAGAGACTTCTAGTTCTAGCAACTTCAAAAGAGCAGTTGACGAACTTGAGCAATTGGGTGTTATTGACGCTGTGATTACTCTTTTCACAGAAGTTCGACCTGGCGAGCTGCAAGAGAGAACAGTTTGGATCATTGAGAGGATACTGAGAGTCGAGAACCATAGGCATTCGCTCAACCAGGCTCTGGTGTGGGCATTGGTGGAAGCCTTTAAGCATGGCAATGCCAACACAAAGCGAAATGCTCAAGATGCTCTTACTAGTCTTAAGCAGTTATCGGGGGTTAGCGGAAATCGAAGATCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

1031

Amino Acids

113.28

Weight (kDa)

5.92

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	251 - 323	2.8e-16	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AasI	GACNNNNNNGTC	1 cut(s)	365
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	2365
AccB7I	CCANNNNNTGG	2 cut(s)	929, 2974
AccBSI	CCGCTC	2 cut(s)	159, 850
AccII	CGCG	2 cut(s)	527, 704
AccIII	TCCGGA	1 cut(s)	1651
AclWI	GGATC	3 cut(s)	664, 677, 2927
AcoI	YGGCCR	5 cut(s)	828, 865, 1203, 1257, 1485
AcsI	RAATTY	3 cut(s)	628, 751, 2079
AcuI	CTGAAG	3 cut(s)	887, 1839, 2085
AcyI	GRCGYC	3 cut(s)	5, 177, 635
AfaI	GTAC	5 cut(s)	798, 818, 839, 1737, 2434
AfiI	CCNNNNNNNGG	6 cut(s)	652, 890, 929, 1494, 2520, 2974
AflII	CTTAAG	1 cut(s)	3053
AgeI	ACCGGT	1 cut(s)	890
AhlI	ACTAGT	3 cut(s)	1630, 2747, 3047
AjnI	CCWGG	9 cut(s)	410, 672, 711, 1404, 1414, 1770, 1834, 2890, 2967
AjuI	GAANNNNNNNTTGG	4 cut(s)	1358, 1390, 2367, 2399
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	3 cut(s)	340, 780, 2789
AlwI	GGATC	3 cut(s)	664, 677, 2927
AlwNI	CAGNNNCTG	1 cut(s)	2974
Ama87I	CYCGRG	1 cut(s)	546
Aor13HI	TCCGGA	1 cut(s)	1651
AoxI	GGCC	8 cut(s)	684, 709, 828, 865, 1203, 1257, 1485, 2147
ApeKI	GCWGC	7 cut(s)	691, 1490, 1593, 1664, 1802, 2762, 2899
ApoI	RAATTY	3 cut(s)	628, 751, 2079
ArsI	GACNNNNNNTTYG	6 cut(s)	264, 296, 312, 344, 620, 652
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	2379
AspLEI	GCGC	3 cut(s)	68, 236, 527
AspS9I	GGNCC	4 cut(s)	373, 601, 684, 709
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	9 cut(s)	136, 145, 162, 193, 455, 790, 880, 970, 2465
AsuII	TTCGAA	2 cut(s)	720, 1148
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	373, 601
BaeGI	GKGCMC	1 cut(s)	1842
BalI	TGGCCA	2 cut(s)	1205, 1259
BamHI	GGATCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	553
BbsI	GAAGAC	6 cut(s)	509, 729, 2262, 2273, 2372, 2619
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	2 cut(s)	230, 1434
BbvI	GCAGC	7 cut(s)	703, 1502, 1605, 1676, 1789, 2749, 2886
BccI	CCATC	7 cut(s)	47, 1022, 1447, 1549, 1724, 2289, 2522
BceAI	ACGGC	6 cut(s)	224, 317, 350, 500, 671, 880
BcgI	CGANNNNNNTGC	4 cut(s)	259, 293, 379, 413
BciT130I	CCWGG	9 cut(s)	412, 674, 713, 1406, 1416, 1772, 1836, 2892, 2969
BciVI	GTATCC	4 cut(s)	1086, 1766, 1768, 2925
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	3 cut(s)	340, 780, 2789
BcuI	ACTAGT	3 cut(s)	1630, 2747, 3047
BfmI	CTRYAG	3 cut(s)	1563, 2763, 3092
BfoI	RGCGCY	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	3053
BfuAI	ACCTGC	1 cut(s)	2365
BfuI	GTATCC	4 cut(s)	1086, 1766, 1768, 2925
BglII	AGATCT	2 cut(s)	2213, 3086
BlpI	GCTNAGC	1 cut(s)	1004
BmcAI	AGTACT	1 cut(s)	839
Bme18I	GGWCC	2 cut(s)	373, 601
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	4 cut(s)	373, 601, 684, 709
BmiI	GGNNCC	1 cut(s)	671
BmrI	ACTGGG	1 cut(s)	1852
BmuI	ACTGGG	1 cut(s)	1852
BpiI	GAAGAC	6 cut(s)	509, 729, 2262, 2273, 2372, 2619
BplI	GAGNNNNNCTC	2 cut(s)	2335, 2367
BpmI	CTGGAG	5 cut(s)	116, 394, 695, 734, 1427
Bpu10I	CCTNAGC	3 cut(s)	230, 1434, 2144
Bpu1102I	GCTNAGC	1 cut(s)	1004
Bpu14I	TTCGAA	2 cut(s)	720, 1148
BpuEI	CTTGAG	6 cut(s)	194, 1340, 1372, 2075, 2858, 3018
BpuMI	CCSGG	1 cut(s)	791
BsaHI	GRCGYC	3 cut(s)	5, 177, 635
BsaI	GGTCTC	1 cut(s)	780
BsaJI	CCNNGG	5 cut(s)	411, 1812, 1835, 2518, 2587
BsaWI	WCCGGW	3 cut(s)	883, 890, 1651
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 71, 98, 101, 281, 311
Bsc4I	CCNNNNNNNGG	6 cut(s)	652, 890, 929, 1494, 2520, 2974
Bse118I	RCCGGY	2 cut(s)	620, 890
Bse1I	ACTGG	2 cut(s)	845, 1847
Bse3DI	GCAATG	2 cut(s)	1622, 3016
BseAI	TCCGGA	1 cut(s)	1651
BseBI	CCWGG	9 cut(s)	412, 674, 713, 1406, 1416, 1772, 1836, 2892, 2969
BseDI	CCNNGG	5 cut(s)	411, 1812, 1835, 2518, 2587
BseGI	GGATG	7 cut(s)	39, 285, 1033, 1411, 1716, 1928, 2514
BseLI	CCNNNNNNNGG	6 cut(s)	652, 890, 929, 1494, 2520, 2974
BseMI	GCAATG	2 cut(s)	1622, 3016
BseMII	CTCAG	7 cut(s)	244, 596, 1080, 1425, 2089, 2124, 2927
BseNI	ACTGG	2 cut(s)	845, 1847
BseRI	GAGGAG	7 cut(s)	10, 76, 157, 344, 965, 1451, 2356
BseSI	GKGCMC	1 cut(s)	1842
BseX3I	CGGCCG	1 cut(s)	865
BseXI	GCAGC	7 cut(s)	703, 1502, 1605, 1676, 1789, 2749, 2886
BsgI	GTGCAG	1 cut(s)	710
Bsh1236I	CGCG	2 cut(s)	527, 704
Bsh1285I	CGRYCG	2 cut(s)	827, 868
BshFI	GGCC	8 cut(s)	686, 711, 830, 867, 1205, 1259, 1487, 2149
BshTI	ACCGGT	1 cut(s)	890
BsiEI	CGRYCG	2 cut(s)	827, 868
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	9 cut(s)	339, 566, 621, 646, 791, 884, 891, 939, 1652
BsiWI	CGTACG	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	428, 1174
BslI	CCNNNNNNNGG	6 cut(s)	652, 890, 929, 1494, 2520, 2974
BsmAI	GTCTC	3 cut(s)	340, 780, 2789
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	428, 1174
BsmI	GAATGC	2 cut(s)	1108, 2956
BsnI	GGCC	8 cut(s)	686, 711, 830, 867, 1205, 1259, 1487, 2149
Bso31I	GGTCTC	1 cut(s)	780
BsoBI	CYCGRG	1 cut(s)	546
Bsp119I	TTCGAA	2 cut(s)	720, 1148
Bsp1286I	GDGCHC	2 cut(s)	553, 1842
Bsp13I	TCCGGA	1 cut(s)	1651
Bsp143I	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
Bsp1720I	GCTNAGC	1 cut(s)	1004
Bsp19I	CCATGG	2 cut(s)	1812, 2587
Bsp68I	TCGCGA	1 cut(s)	704
BspANI	GGCC	8 cut(s)	686, 711, 830, 867, 1205, 1259, 1487, 2149
BspCNI	CTCAG	7 cut(s)	243, 597, 1079, 1426, 2088, 2123, 2928
BspEI	TCCGGA	1 cut(s)	1651
BspFNI	CGCG	2 cut(s)	527, 704
BspLI	GGNNCC	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	2767
BspMI	ACCTGC	1 cut(s)	2365
BspPI	GGATC	3 cut(s)	664, 677, 2927
BspQI	GCTCTTC	2 cut(s)	1005, 1654
BspT104I	TTCGAA	2 cut(s)	720, 1148
BspTI	CTTAAG	1 cut(s)	3053
BspTNI	GGTCTC	1 cut(s)	780
BsrBI	CCGCTC	2 cut(s)	159, 850
BsrDI	GCAATG	2 cut(s)	1622, 3016
BsrFI	RCCGGY	2 cut(s)	620, 890
BsrI	ACTGG	2 cut(s)	845, 1847
BssAI	RCCGGY	2 cut(s)	620, 890
BssECI	CCNNGG	5 cut(s)	411, 1812, 1835, 2518, 2587
BssMI	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
BssNI	GRCGYC	3 cut(s)	5, 177, 635
BssT1I	CCWWGG	3 cut(s)	1812, 2518, 2587
Bst2UI	CCWGG	9 cut(s)	412, 674, 713, 1406, 1416, 1772, 1836, 2892, 2969
Bst4CI	ACNGT	6 cut(s)	328, 825, 1145, 2437, 2625, 2914
Bst6I	CTCTTC	5 cut(s)	447, 1005, 1065, 1145, 1654
BstACI	GRCGYC	3 cut(s)	5, 177, 635
BstAFI	CTTAAG	1 cut(s)	3053
BstBI	TTCGAA	2 cut(s)	720, 1148
BstC8I	GCNNGC	9 cut(s)	138, 344, 348, 622, 1108, 1669, 1989, 2227, 2897
BstDSI	CCRYGG	2 cut(s)	1812, 2587
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	7 cut(s)	39, 285, 1033, 1411, 1716, 1928, 2514
BstFNI	CGCG	2 cut(s)	527, 704
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	3 cut(s)	68, 236, 527
BstKTI	GATC	8 cut(s)	385, 406, 672, 2216, 2552, 2728, 2922, 3089
BstMAI	GTCTC	3 cut(s)	340, 780, 2789
BstMBI	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
BstMCI	CGRYCG	2 cut(s)	827, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 589, 1187, 2771, 3038
BstNI	CCWGG	9 cut(s)	412, 674, 713, 1406, 1416, 1772, 1836, 2892, 2969
BstNSI	RCATGY	2 cut(s)	2229, 2371
BstPI	GGTNACC	1 cut(s)	886
BstSFI	CTRYAG	3 cut(s)	1563, 2763, 3092
BstSLI	GKGCMC	1 cut(s)	1842
BstUI	CGCG	2 cut(s)	527, 704
BstV1I	GCAGC	7 cut(s)	703, 1502, 1605, 1676, 1789, 2749, 2886
BstV2I	GAAGAC	6 cut(s)	509, 729, 2262, 2273, 2372, 2619
BstX2I	RGATCY	3 cut(s)	669, 2213, 3086
BstXI	CCANNNNNNTGG	2 cut(s)	31, 1842
BstYI	RGATCY	3 cut(s)	669, 2213, 3086
BstZI	CGGCCG	1 cut(s)	865
BsuI	GTATCC	4 cut(s)	1086, 1766, 1768, 2925
BsuRI	GGCC	8 cut(s)	686, 711, 830, 867, 1205, 1259, 1487, 2149
BtgI	CCRYGG	2 cut(s)	1812, 2587
BtgZI	GCGATG	2 cut(s)	202, 601
BtsCI	GGATG	7 cut(s)	39, 285, 1033, 1411, 1716, 1928, 2514
BtsI	GCAGTG	2 cut(s)	289, 2772
BtsIMutI	CAGTG	3 cut(s)	289, 1840, 2772
BtuMI	TCGCGA	1 cut(s)	704
BveI	ACCTGC	1 cut(s)	2365
Cac8I	GCNNGC	9 cut(s)	138, 344, 348, 622, 1108, 1669, 1989, 2227, 2897
CaiI	CAGNNNCTG	1 cut(s)	2974
CfoI	GCGC	3 cut(s)	68, 236, 527
Cfr10I	RCCGGY	2 cut(s)	620, 890
Cfr13I	GGNCC	4 cut(s)	373, 601, 684, 709
CseI	GACGC	5 cut(s)	185, 502, 624, 737, 2867
Csp6I	GTAC	5 cut(s)	797, 817, 838, 1736, 2433
CspAI	ACCGGT	1 cut(s)	890
CviQI	GTAC	5 cut(s)	797, 817, 838, 1736, 2433
DpnI	GATC	8 cut(s)	384, 405, 671, 2215, 2551, 2727, 2921, 3088
DpnII	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	5 cut(s)	828, 865, 1203, 1257, 1485
EagI	CGGCCG	1 cut(s)	865
Eam1104I	CTCTTC	5 cut(s)	447, 1005, 1065, 1145, 1654
EarI	CTCTTC	5 cut(s)	447, 1005, 1065, 1145, 1654
EciI	GGCGGA	3 cut(s)	4, 103, 352
Ecl136II	GAGCTC	1 cut(s)	551
EclXI	CGGCCG	1 cut(s)	865
Eco130I	CCWWGG	3 cut(s)	1812, 2518, 2587
Eco147I	AGGCCT	1 cut(s)	2149
Eco24I	GRGCYC	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	373, 601
Eco52I	CGGCCG	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	3 cut(s)	887, 1839, 2085
Eco88I	CYCGRG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	886
EcoICRI	GAGCTC	1 cut(s)	551
EcoO109I	RGGNCCY	2 cut(s)	373, 601
EcoO65I	GGTNACC	1 cut(s)	886
EcoRI	GAATTC	2 cut(s)	628, 2079
EcoRII	CCWGG	9 cut(s)	410, 672, 711, 1404, 1414, 1770, 1834, 2890, 2967
EcoT14I	CCWWGG	3 cut(s)	1812, 2518, 2587
EcoT22I	ATGCAT	1 cut(s)	2231
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	3 cut(s)	1812, 2518, 2587
Esp3I	CGTCTC	1 cut(s)	340
FalI	AAGNNNNNCTT	4 cut(s)	2367, 2399, 3027, 3059
FaqI	GGGAC	2 cut(s)	428, 1174
FauI	CCCGC	3 cut(s)	164, 195, 1750
FokI	GGATG	7 cut(s)	26, 272, 1040, 1398, 1703, 1915, 2501
FriOI	GRGCYC	1 cut(s)	553
GlaI	GCGC	3 cut(s)	67, 235, 526
GsuI	CTGGAG	5 cut(s)	116, 394, 695, 734, 1427
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	8 cut(s)	686, 711, 830, 867, 1205, 1259, 1487, 2149
HapII	CCGG	9 cut(s)	339, 566, 621, 646, 791, 884, 891, 939, 1652
HgaI	GACGC	5 cut(s)	185, 502, 624, 737, 2867
HhaI	GCGC	3 cut(s)	68, 236, 527
Hin1I	GRCGYC	3 cut(s)	5, 177, 635
Hin6I	GCGC	3 cut(s)	66, 234, 525
HinP1I	GCGC	3 cut(s)	66, 234, 525
HincII	GTYRAC	2 cut(s)	768, 2830
HindII	GTYRAC	2 cut(s)	768, 2830
HindIII	AAGCTT	4 cut(s)	1001, 1338, 2085, 2159
HpaII	CCGG	9 cut(s)	339, 566, 621, 646, 791, 884, 891, 939, 1652
HphI	GGTGA	9 cut(s)	136, 145, 162, 193, 455, 790, 880, 970, 2465
Hpy166II	GTNNAC	3 cut(s)	463, 768, 2830
Hpy8I	GTNNAC	3 cut(s)	463, 768, 2830
Hpy99I	CGWCG	9 cut(s)	179, 332, 371, 496, 640, 709, 731, 811, 866
HpyCH4III	ACNGT	6 cut(s)	328, 825, 1145, 2437, 2625, 2914
HpyCH4IV	ACGT	2 cut(s)	5, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 589, 1187, 2771, 3038
HpySE526I	ACGT	2 cut(s)	5, 815
Hsp92I	GRCGYC	3 cut(s)	5, 177, 635
HspAI	GCGC	3 cut(s)	66, 234, 525
Kpn2I	TCCGGA	1 cut(s)	1651
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
LguI	GCTCTTC	2 cut(s)	1005, 1654
LmnI	GCTCC	4 cut(s)	164, 913, 941, 1408
Lsp1109I	GCAGC	7 cut(s)	703, 1502, 1605, 1676, 1789, 2749, 2886
MaeII	ACGT	2 cut(s)	5, 815
MaeIII	GTNAC	5 cut(s)	6, 439, 886, 1314, 2153
MalI	GATC	8 cut(s)	384, 405, 671, 2215, 2551, 2727, 2921, 3088
MbiI	CCGCTC	2 cut(s)	159, 850
MboI	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
MfeI	CAATTG	4 cut(s)	945, 2684, 2704, 2843
MflI	RGATCY	3 cut(s)	669, 2213, 3086
MhlI	GDGCHC	2 cut(s)	553, 1842
MlsI	TGGCCA	2 cut(s)	1205, 1259
MluNI	TGGCCA	2 cut(s)	1205, 1259
MlyI	GAGTC	5 cut(s)	29, 353, 1156, 2006, 2949
MmeI	TCCRAC	5 cut(s)	618, 642, 1026, 1764, 2352
Mox20I	TGGCCA	2 cut(s)	1205, 1259
Mph1103I	ATGCAT	1 cut(s)	2231
MroI	TCCGGA	1 cut(s)	1651
MroNI	GCCGGC	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	2379
MscI	TGGCCA	2 cut(s)	1205, 1259
MslI	CAYNNNNRTG	2 cut(s)	1115, 3009
Msp20I	TGGCCA	2 cut(s)	1205, 1259
MspA1I	CMGCKG	1 cut(s)	1859
MspCI	CTTAAG	1 cut(s)	3053
MspI	CCGG	9 cut(s)	339, 566, 621, 646, 791, 884, 891, 939, 1652
MunI	CAATTG	4 cut(s)	945, 2684, 2704, 2843
Mva1269I	GAATGC	2 cut(s)	1108, 2956
MvaI	CCWGG	9 cut(s)	412, 674, 713, 1406, 1416, 1772, 1836, 2892, 2969
MvnI	CGCG	2 cut(s)	527, 704
MwoI	GCNNNNNNNGC	5 cut(s)	53, 589, 1187, 2771, 3038
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	1 cut(s)	791
NcoI	CCATGG	2 cut(s)	1812, 2587
NdeII	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
NgoMIV	GCCGGC	1 cut(s)	620
NlaIV	GGNNCC	1 cut(s)	671
NmeAIII	GCCGAG	2 cut(s)	604, 893
NmuCI	GTSAC	3 cut(s)	6, 439, 886
NruI	TCGCGA	1 cut(s)	704
NsiI	ATGCAT	1 cut(s)	2231
NspI	RCATGY	2 cut(s)	2229, 2371
NspV	TTCGAA	2 cut(s)	720, 1148
PaeI	GCATGC	1 cut(s)	2229
PaeR7I	CTCGAG	1 cut(s)	546
PceI	AGGCCT	1 cut(s)	2149
PciSI	GCTCTTC	2 cut(s)	1005, 1654
PcsI	WCGNNNNNNNCGW	5 cut(s)	324, 354, 363, 632, 812
PctI	GAATGC	2 cut(s)	1108, 2956
PdiI	GCCGGC	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	2379
PfeI	GAWTC	5 cut(s)	571, 976, 1500, 1727, 1889
Pfl23II	CGTACG	1 cut(s)	816
PflMI	CCANNNNNTGG	2 cut(s)	929, 2974
PfoI	TCCNGGA	1 cut(s)	672
PinAI	ACCGGT	1 cut(s)	890
PleI	GAGTC	5 cut(s)	29, 353, 1156, 2005, 2948
PpsI	GAGTC	5 cut(s)	29, 353, 1156, 2005, 2948
PpuMI	RGGWCCY	2 cut(s)	373, 601
PsiI	TTATAA	1 cut(s)	1059
Psp124BI	GAGCTC	1 cut(s)	553
Psp5II	RGGWCCY	2 cut(s)	373, 601
Psp6I	CCWGG	9 cut(s)	410, 672, 711, 1404, 1414, 1770, 1834, 2890, 2967
PspEI	GGTNACC	1 cut(s)	886
PspGI	CCWGG	9 cut(s)	410, 672, 711, 1404, 1414, 1770, 1834, 2890, 2967
PspLI	CGTACG	1 cut(s)	816
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	4 cut(s)	373, 601, 684, 709
PspPPI	RGGWCCY	2 cut(s)	373, 601
PspXI	VCTCGAGB	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	2767
PstNI	CAGNNNCTG	1 cut(s)	2974
PsuI	RGATCY	3 cut(s)	669, 2213, 3086
PvuII	CAGCTG	1 cut(s)	1859
RruI	TCGCGA	1 cut(s)	704
RsaI	GTAC	5 cut(s)	798, 818, 839, 1737, 2434
RsaNI	GTAC	5 cut(s)	797, 817, 838, 1736, 2433
RseI	CAYNNNNRTG	2 cut(s)	1115, 3009
SacI	GAGCTC	1 cut(s)	553
SapI	GCTCTTC	2 cut(s)	1005, 1654
Sau3AI	GATC	8 cut(s)	382, 403, 669, 2213, 2549, 2725, 2919, 3086
Sau96I	GGNCC	4 cut(s)	373, 601, 684, 709
ScaI	AGTACT	1 cut(s)	839
SchI	GAGTC	5 cut(s)	29, 353, 1156, 2006, 2949
SduI	GDGCHC	2 cut(s)	553, 1842
SfcI	CTRYAG	3 cut(s)	1563, 2763, 3092
Sfr274I	CTCGAG	1 cut(s)	546
SfuI	TTCGAA	2 cut(s)	720, 1148
SinI	GGWCC	2 cut(s)	373, 601
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	2 cut(s)	1115, 3009
SmlI	CTYRAG	8 cut(s)	209, 546, 1319, 1387, 2054, 2837, 3033, 3053
SmoI	CTYRAG	8 cut(s)	209, 546, 1319, 1387, 2054, 2837, 3033, 3053
SpeI	ACTAGT	3 cut(s)	1630, 2747, 3047
SphI	GCATGC	1 cut(s)	2229
SseBI	AGGCCT	1 cut(s)	2149
SspI	AATATT	1 cut(s)	928
SstI	GAGCTC	1 cut(s)	553
StuI	AGGCCT	1 cut(s)	2149
StyI	CCWWGG	3 cut(s)	1812, 2518, 2587
TaaI	ACNGT	6 cut(s)	328, 825, 1145, 2437, 2625, 2914
TaiI	ACGT	2 cut(s)	8, 818
TatI	WGTACW	3 cut(s)	837, 1735, 2432
TauI	GCSGC	6 cut(s)	108, 182, 224, 239, 1490, 2561
TfiI	GAWTC	5 cut(s)	571, 976, 1500, 1727, 1889
TscAI	CASTG	3 cut(s)	296, 1847, 2772
TseFI	GTSAC	3 cut(s)	6, 439, 886
TseI	GCWGC	7 cut(s)	691, 1490, 1593, 1664, 1802, 2762, 2899
Tsp45I	GTSAC	3 cut(s)	6, 439, 886
TspDTI	ATGAA	6 cut(s)	434, 1227, 1350, 1753, 2456, 2602
TspGWI	ACGGA	4 cut(s)	184, 732, 753, 2750
TspRI	CASTG	3 cut(s)	296, 1847, 2772
Van91I	CCANNNNNTGG	2 cut(s)	929, 2974
Vha464I	CTTAAG	1 cut(s)	3053
VpaK11BI	GGWCC	2 cut(s)	373, 601
XapI	RAATTY	3 cut(s)	628, 751, 2079
XbaI	TCTAGA	2 cut(s)	1699, 2632
XceI	RCATGY	2 cut(s)	2229, 2371
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1964, 2333
XhoI	CTCGAG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	2379
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	839
Zsp2I	ATGCAT	1 cut(s)	2231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.