Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Forward (+)

21089283 .. 21090932

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCTGGTAAATCGACTCGTTCCGATTCAACGCCACTCCTTCGCCCACAACACCATCCATCACAACGCTTCTCCCCCTCAAACGCTTATTCCTCATACTCCTCTATCTCTCTCGAAATGACCTCCGCCGTCTCCGCCACCACCACCCCCACCGCCCGCTCCTTCTTCCTCGGCGTCGACGTCGGCACCGGCAGAGCCCGCGCAGGTGTGTTTGATGAGAATGGGAAGCTTCTAGAAGTTTCCGGGGATGAAGTGAAGGGTCTGGGATTCGCGGCTACTTGTTCACTAGTTGCAGTGGATGCTGATGGCTCTCCTGTTACGGTTTCCTGGAGTGGTGATTCAAGAAGAAACATAATAGTATGGATGGACCATAGAGCTGTAGAACAAGCTGAAAGGATCAATTCACACAACTCACCCGTCCTGCAGTACTGTGGTGGAGCTCTTTCCCCTGAGATGCAGCCTCCTAAGCTTTTATGGGTGAAAGAAAATCTGCCAGAATCTTGGTCAATGGTCTTCAGGTGGATGGACTTGAGTGATTGGTTATCATACAGGGCCACAGGAGATGATGCACGTAGTCTCTGCACAACAGTTTGCAAATGGACATATCTTGGTCATGCACATATGCAGCAAAACAATGAGAAAGATTCTCGAGACATGGAAGCTTGTGGATGGGATGATGATTTCTGGGAGGAGATTGGATTAGGTGATCTTGTAGAAGGGTATCATGCTAAGATAGGGAAATTTTTGAATTCGAAGTTTTTCTATGTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

257

Amino Acids

28.52

Weight (kDa)

5.36

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_N	PF00370	80 - 192	3.4e-08	FGGY family of carbohydrate kinases, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	201, 272
AciI	CCGC	6 cut(s)	126, 135, 153, 157, 199, 272
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	740, 748
AcuI	CTGAAG	1 cut(s)	499
AcyI	GRCGYC	2 cut(s)	174, 180
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	30, 342, 748
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	6 cut(s)	229, 377, 389, 440, 469, 662
AluI	AGCT	6 cut(s)	229, 377, 389, 440, 469, 662
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	3 cut(s)	136, 581, 645
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	2 cut(s)	457, 625
ApoI	RAATTY	2 cut(s)	740, 748
Asp700I	GAANNNNTTC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	367, 552
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	4 cut(s)	347, 405, 490, 716
AsuII	TTCGAA	1 cut(s)	752
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	199, 442
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	469, 637
BccI	CCATC	6 cut(s)	63, 67, 299, 358, 517, 663
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	136, 581, 645
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	2 cut(s)	233, 287
BfmI	CTRYAG	2 cut(s)	378, 422
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	3 cut(s)	273, 458, 626
BlsI	GCNGC	3 cut(s)	274, 459, 627
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	244, 328
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	367, 552
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	244, 328
BmsI	GCATC	3 cut(s)	289, 444, 556
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	174, 180
BsaJI	CCNNGG	2 cut(s)	169, 243
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	169, 243
BseGI	GGATG	7 cut(s)	55, 253, 304, 369, 528, 674, 679
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	91, 704
BseXI	GCAGC	2 cut(s)	469, 637
BsgI	GTGCAG	1 cut(s)	565
Bsh1236I	CGCG	2 cut(s)	201, 272
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	189, 243
BsmAI	GTCTC	3 cut(s)	136, 581, 645
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	199, 442
Bsp143I	GATC	2 cut(s)	396, 706
BspACI	CCGC	6 cut(s)	126, 135, 153, 157, 199, 272
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	201, 272
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	169, 243
BssMI	GATC	2 cut(s)	396, 706
BssNI	GRCGYC	2 cut(s)	174, 180
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	322, 431, 589
BstACI	GRCGYC	2 cut(s)	174, 180
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	157, 199
BstDEI	CTNAG	3 cut(s)	450, 465, 729
BstF5I	GGATG	7 cut(s)	55, 253, 304, 369, 528, 674, 679
BstFNI	CGCG	2 cut(s)	201, 272
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	399, 709
BstMAI	GTCTC	3 cut(s)	136, 581, 645
BstMBI	GATC	2 cut(s)	396, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 198, 299, 466
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	242, 326
BstSFI	CTRYAG	2 cut(s)	378, 422
BstUI	CGCG	2 cut(s)	201, 272
BstV1I	GCAGC	2 cut(s)	469, 637
BstV2I	GAAGAC	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	7 cut(s)	55, 253, 304, 369, 528, 674, 679
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	157, 199
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	367, 552
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	3 cut(s)	614, 655, 725
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	450, 465, 729
DpnI	GATC	2 cut(s)	398, 708
DpnII	GATC	2 cut(s)	396, 706
EciI	GGCGGA	2 cut(s)	115, 124
Ecl136II	GAGCTC	1 cut(s)	440
Eco24I	GRGCYC	2 cut(s)	199, 442
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	199, 442
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	3 cut(s)	617, 658, 728
FatI	CATG	3 cut(s)	613, 654, 724
FauI	CCCGC	2 cut(s)	164, 206
FauNDI	CATATG	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	273, 458, 626
FokI	GGATG	7 cut(s)	42, 260, 311, 376, 535, 681, 686
FriOI	GRGCYC	2 cut(s)	199, 442
Fsp4HI	GCNGC	3 cut(s)	273, 458, 626
FspBI	CTAG	2 cut(s)	233, 287
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	273, 458, 626
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	2 cut(s)	189, 243
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	2 cut(s)	174, 180
Hin1II	CATG	3 cut(s)	617, 658, 728
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	3 cut(s)	227, 467, 660
HinfI	GANTC	6 cut(s)	16, 26, 267, 338, 497, 644
HpaII	CCGG	2 cut(s)	189, 243
HphI	GGTGA	4 cut(s)	347, 405, 490, 716
Hpy166II	GTNNAC	2 cut(s)	178, 284
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	5 cut(s)	113, 233, 342, 648, 650
Hpy8I	GTNNAC	2 cut(s)	178, 284
Hpy99I	CGWCG	3 cut(s)	179, 182, 185
HpyAV	CCTTC	4 cut(s)	50, 172, 250, 710
HpyCH4III	ACNGT	3 cut(s)	322, 431, 589
HpyCH4IV	ACGT	2 cut(s)	180, 571
HpyCH4V	TGCA	8 cut(s)	293, 424, 457, 569, 582, 594, 617, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 198, 299, 466
HpyF3I	CTNAG	3 cut(s)	450, 465, 729
HpySE526I	ACGT	2 cut(s)	180, 571
Hsp92I	GRCGYC	2 cut(s)	174, 180
Hsp92II	CATG	3 cut(s)	617, 658, 728
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	396, 706
LmnI	GCTCC	2 cut(s)	164, 437
Lsp1109I	GCAGC	2 cut(s)	469, 637
LweI	GCATC	3 cut(s)	289, 444, 556
MaeI	CTAG	2 cut(s)	233, 287
MaeII	ACGT	2 cut(s)	180, 571
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	398, 708
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	2 cut(s)	396, 706
MboII	GAAGA	3 cut(s)	157, 357, 505
MhlI	GDGCHC	2 cut(s)	199, 442
MluCI	AATT	3 cut(s)	400, 740, 748
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	7 cut(s)	88, 103, 112, 133, 179, 471, 682
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	1 cut(s)	772
MspI	CCGG	2 cut(s)	189, 243
MspR9I	CCNGG	2 cut(s)	244, 328
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	2 cut(s)	201, 272
MwoI	GCNNNNNNNGC	4 cut(s)	134, 198, 299, 466
NciI	CCSGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	2 cut(s)	396, 706
NlaIII	CATG	3 cut(s)	617, 658, 728
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	5 cut(s)	26, 267, 338, 497, 644
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	274, 459, 627
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Ppu21I	YACGTR	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	367, 552
PstI	CTGCAG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	442
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	3 cut(s)	273, 458, 626
Sau3AI	GATC	2 cut(s)	396, 706
Sau96I	GGNCC	2 cut(s)	367, 552
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	244, 328
SduI	GDGCHC	2 cut(s)	199, 442
SfaNI	GCATC	3 cut(s)	289, 444, 556
SfcI	CTRYAG	2 cut(s)	378, 422
Sfr274I	CTCGAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	752
SgrDI	CGTCGACG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	648
SmlI	CTYRAG	2 cut(s)	529, 648
SmoI	CTYRAG	2 cut(s)	529, 648
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	3 cut(s)	400, 740, 748
SsiI	CCGC	6 cut(s)	126, 135, 153, 157, 199, 272
SspMI	CTAG	2 cut(s)	233, 287
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	242, 326
TaaI	ACNGT	3 cut(s)	322, 431, 589
TaiI	ACGT	2 cut(s)	183, 574
TaqI	TCGA	5 cut(s)	14, 114, 177, 649, 752
TasI	AATT	3 cut(s)	400, 740, 748
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	5 cut(s)	26, 267, 338, 497, 644
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	457, 625
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	740, 748
XbaI	TCTAGA	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	233, 287
ZraI	GACGTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.