Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Forward (+)

38901909 .. 38904437

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGGCGGTACCAAGCTCCTGGTTGCTCCTTATAGCTCTTGTTTTCTTGGTTGTTTCAGCTGCAGTAGCCCATACGAAAAGCCAAGGTCGTAGCCACGATGGTGGGAAGCACCAGCTTGAAACAGGGCCCGTAACATATGATGGGAGGTCGCTGCTTATCAATGGCAAACGAGAGCTTCTATTTTCCGGTTCAATTCATTATACACGAAGCACGCCAGAAATGTGGCCTGATCTTCTCCGAAAGGCTAAATATGGAGGTTTGAATGTGATTCAAACTTACGTGTTTTGGAACATTCACGAGCCGGTGAAAGGTCAATACAATTTTTCAGGAAACTATGATTTGGTGAGGTTCATTAAGCTTGTTCAAGAGCATGGAATGTATGTTACCCTTCGAGTTGGGCCATTCATTCAAGCCGAATGGAACCATGGAGGACTTCCATATTGGCTGAGAGAGGTCCCCAACCTAATATTTCGTACTGATAATGCACCATACAAGTACTATATGAAGAAGTATGTGACCATGATTGTAGACAAGCTGAAAGAAGCGAAGCTATTTTTTCCTCAAGGCGGCCCGATCATATTGGCACAGATTGAAAATGAGTACGATCATATACAGCTTGCATATAAAGACATGGGATTCAGTTATGTCAGATGGGCAGCAAGGATGGCCGTAAAGCAAAACGCTGGAGTACCATGGATCATGTGCAAGCAGACCGATGCTCCTGATCCGGTGATTAATACTTGTAACGGAAGGCATTGTGGAGATACTTTCTTCGGGCCTAATAAGCCATACAAGCCTGCTCTATGGACCGAAAACTGGACAGCTCAGTACAGAGTATTTGGTGATCCAGCTTCACAGAGACCCGCAGAAGATATAGCATTTTCAGTTGCCCGCTTTTTCTCAAAGAATGGAGCTCTAACCAACTACTACATGTACCATGGTGGGACTAATTTTGGAAGAACAAGTGCGATTTTTACAACAACTCGCTACTATGACGAAGCACCTCTTGACGAATATGGTTTGCCAAGGGACCCAAAATGGAGTCACCTCAAGGACTTGCACAAGGCTTTGAGACTAAGCAGGAAGCCTTTGCTTTGGGGAGTTTCAGGTGTCCAAAACTTAGGGGAAAACCTCGAGGCTCGTTTCTATGAGTTGAAAAACAACTCCAAAATCTGTGCTGCTTTCTTGGCCAACAACAATTCAAGGAGTGAAGCAACTGTTAATTGGCGAGGACAAGACTACTACCTTCCACCGCATTCCATTAGCATCCTCCCTGACTGCAAGACCGTAGTCTACAATACTCAAACCATCGTATCGCAACATAATGCAAGGAATATTGTCAGATCAACTTTGGCCAATAAATTGAGATGGATGGAGTCTTCAGAACCCATTCCAAGCACCGTGCAAGTTCCGATCAATAATAGGACACCGTTGGAGCTCTACAGCTTGCTAAAAGATCAGTCAGACTATGCGTGGTACACAACCAGCCTTGAATTGAATCCCAGGGACATGTCCATGAAGGAAAGTATTCAACCGGTTCTACGAATTGGAAGTCTCGGTCACGCAATGCTGGTGTTTGTCAATGGTGAGTATGTTGGTTCCGGACATGGAAGCCACGACGAGAAGAGCTTTGTCTTCCAAAAAGTTGTGTCCTTAAAGGCCGGGGTCAACCAAATAGCTTTGCTTGCCATGACAGTTGGTCTTCCAGATAGCGGAGCGTACATGGAGCACAGATATGCAGGGCCTAAAGACATAGAAGTTCTAGGACTGAACACTGGAACTATAGATCTCTCACAAAATGGGTGGGGGCATCAAGTTGGCCTGAATGGAGAGAAGATCCAAGTCTTCACTGAAGAGGGATCGAAACGGGTTCAATGGGGTGAAATAAATGGACCAAAAAAGGCTCTAACATGGTACAAGACATATTTTGATGCTCCTGAAGGGAATGACCCTGTGGCTATTAAAATGTCTGGTATGGGAAAAGGAATGATGTGGGTGAATGGTAAGAGCATTGGCCGGCACTGGATGTCTTTCCTCTCTCCTCTAGGACAACCTACTCAATCCGAGTACCACATCCCAAGATCCTTCATCGAGCCTACACAAAACTTTCTTGTTGTTTTGGAAGAGGAGCCAGCCAAGCCTAATAGCATTGAGATTATGACTGTCAACAGAGATACCATTTGCAGCTTCATTACTGAGTATCATCCTCCAAATGTCAAGTCATGGACAAGAGAGAACAGCCTCTTCCGACCTGTTTTAGATGTTGTCAGAACATCCGCGGAGTTGAAATGTCCAAACTACAAAAAGGTTGTACAGGTTGAGTTTGCAAGCTTCGGCGATCCTGTTGGTTCATGTGGAAGCTACACCTTGGGCAAATGCAACTCCCCTGTATCTAAGGAGGTTGTTGAACAGCACTGCTTGAACAAAACTAGCTGCGTAGTTCCGATTGACCGCAAGCTTTACTTCAAGAACAATGATGATTGCCCGGATATCAAGAAAACACTAGCTATCCAAGTGAAGTGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

842

Amino Acids

95.17

Weight (kDa)

8.87

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	50 - 356	1.9e-116	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	72 - 203	2.4e-07	Beta-galactosidase
GHD	PF17834	380 - 436	5.8e-21	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	636 - 702	1.6e-23	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	762 - 841	2.8e-15	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1133
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	2 cut(s)	528, 1293
AccII	CGCG	1 cut(s)	2279
AccIII	TCCGGA	1 cut(s)	1601
AciI	CCGC	9 cut(s)	5, 567, 864, 892, 1253, 1713, 2277, 2279, 2452
AclWI	GGATC	7 cut(s)	704, 719, 839, 1831, 1867, 2076, 2333
AcoI	YGGCCR	4 cut(s)	666, 1188, 1353, 2014
AcuI	CTGAAG	3 cut(s)	1365, 1872, 1959
AfiI	CCNNNNNNNGG	4 cut(s)	308, 566, 816, 1712
AflIII	ACRYGT	3 cut(s)	279, 930, 1509
AgeI	ACCGGT	1 cut(s)	1534
AhdI	GACNNNNNGTC	1 cut(s)	1698
AjnI	CCWGG	2 cut(s)	17, 1502
AleI	CACNNNNGTG	1 cut(s)	99
Alw21I	GWGCWC	3 cut(s)	916, 1440, 1731
Alw26I	GTCTC	3 cut(s)	853, 1066, 1559
AlwI	GGATC	7 cut(s)	704, 719, 839, 1831, 1867, 2076, 2333
Ama87I	CYCGRG	1 cut(s)	1133
Aor13HI	TCCGGA	1 cut(s)	1601
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	6 cut(s)	59, 151, 656, 1178, 2184, 2433
ArsI	GACNNNNNNTTYG	4 cut(s)	1537, 1569, 2204, 2236
AseI	ATTAAT	1 cut(s)	735
AsiGI	ACCGGT	1 cut(s)	1534
Asp700I	GAANNNNTTC	2 cut(s)	1389, 1527
Asp718I	GGTACC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	1663, 2486
AsuHPI	GGTGA	8 cut(s)	316, 355, 742, 854, 1037, 1598, 1892, 2008
AvaI	CYCGRG	1 cut(s)	1133
AvaII	GGWCC	4 cut(s)	454, 807, 1030, 1892
BaeGI	GKGCMC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	1296, 1329
BalI	TGGCCA	2 cut(s)	1190, 1355
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	3 cut(s)	129, 916, 1440
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	4 cut(s)	1371, 1627, 1694, 1837
Bbv12I	GWGCWC	3 cut(s)	916, 1440, 1731
BbvI	GCAGC	6 cut(s)	46, 138, 668, 1165, 2196, 2420
BccI	CCATC	7 cut(s)	92, 134, 645, 658, 1316, 1362, 1366
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	19, 1504
BcnI	CCSGG	2 cut(s)	1663, 2486
BcoDI	GTCTC	3 cut(s)	853, 1066, 1559
BfaI	CTAG	4 cut(s)	1763, 2045, 2430, 2504
BfmI	CTRYAG	3 cut(s)	60, 1441, 1782
BglII	AGATCT	1 cut(s)	1786
BisI	GCNGC	7 cut(s)	60, 152, 568, 657, 1179, 2185, 2434
BlsI	GCNGC	7 cut(s)	61, 153, 569, 658, 1180, 2186, 2435
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	4 cut(s)	19, 1504, 1663, 2486
Bme18I	GGWCC	4 cut(s)	454, 807, 1030, 1892
BmeRI	GACNNNNNGTC	1 cut(s)	1698
BmeT110I	CYCGRG	1 cut(s)	1133
BmiI	GGNNCC	8 cut(s)	9, 127, 422, 456, 1031, 1032, 1600, 2130
BmrFI	CCNGG	4 cut(s)	19, 1504, 1663, 2486
BmsI	GCATC	4 cut(s)	706, 1275, 1819, 1921
BoxI	GACNNNNGTC	1 cut(s)	1289
BpiI	GAAGAC	4 cut(s)	1371, 1627, 1694, 1837
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	2 cut(s)	546, 1034
BpuMI	CCSGG	2 cut(s)	1663, 2486
BsaAI	YACGTR	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	853
BsaWI	WCCGGW	4 cut(s)	185, 727, 1534, 1601
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 566, 816, 1712
Bse118I	RCCGGY	3 cut(s)	301, 1534, 2016
Bse1I	ACTGG	3 cut(s)	821, 1780, 2027
Bse3DI	GCAATG	1 cut(s)	1572
BseAI	TCCGGA	1 cut(s)	1601
BseBI	CCWGG	2 cut(s)	19, 1504
BseGI	GGATG	7 cut(s)	669, 1266, 1377, 2031, 2073, 2203, 2273
BseLI	CCNNNNNNNGG	4 cut(s)	308, 566, 816, 1712
BseMI	GCAATG	1 cut(s)	1572
BseMII	CTCAG	3 cut(s)	437, 839, 2187
BseNI	ACTGG	3 cut(s)	821, 1780, 2027
BseRI	GAGGAG	2 cut(s)	2031, 2141
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	6 cut(s)	46, 138, 668, 1165, 2196, 2420
Bsh1236I	CGCG	1 cut(s)	2279
BshNI	GGYRCC	1 cut(s)	7
BshTI	ACCGGT	1 cut(s)	1534
BsiHKAI	GWGCWC	3 cut(s)	916, 1440, 1731
BsiHKCI	CYCGRG	1 cut(s)	1133
BsiSI	CCGG	8 cut(s)	186, 302, 728, 1535, 1602, 1662, 2017, 2486
BslFI	GGGAC	4 cut(s)	440, 958, 1043, 1520
BslI	CCNNNNNNNGG	4 cut(s)	308, 566, 816, 1712
BsmAI	GTCTC	3 cut(s)	853, 1066, 1559
BsmFI	GGGAC	4 cut(s)	440, 958, 1043, 1520
BsmI	GAATGC	1 cut(s)	1255
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	1 cut(s)	1133
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	4 cut(s)	129, 916, 1440, 1731
Bsp13I	TCCGGA	1 cut(s)	1601
Bsp1407I	TGTACA	1 cut(s)	2311
Bsp19I	CCATGG	3 cut(s)	424, 692, 937
BspACI	CCGC	9 cut(s)	5, 567, 864, 892, 1253, 1713, 2277, 2279, 2452
BspCNI	CTCAG	3 cut(s)	438, 838, 2188
BspEI	TCCGGA	1 cut(s)	1601
BspFNI	CGCG	1 cut(s)	2279
BspLI	GGNNCC	8 cut(s)	9, 127, 422, 456, 1031, 1032, 1600, 2130
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	7 cut(s)	704, 719, 839, 1831, 1867, 2076, 2333
BspQI	GCTCTTC	1 cut(s)	1619
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	1572
BsrFI	RCCGGY	3 cut(s)	301, 1534, 2016
BsrGI	TGTACA	1 cut(s)	2311
BsrI	ACTGG	3 cut(s)	821, 1780, 2027
BssAI	RCCGGY	3 cut(s)	301, 1534, 2016
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	6 cut(s)	82, 424, 692, 937, 1025, 2367
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	19, 1504
Bst4CI	ACNGT	6 cut(s)	1219, 1288, 1402, 1431, 1696, 2164
Bst6I	CTCTTC	4 cut(s)	1619, 1848, 2118, 2249
BstAUI	TGTACA	1 cut(s)	2311
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	7 cut(s)	446, 825, 1076, 1120, 2196, 2394, 2526
BstDSI	CCRYGG	4 cut(s)	424, 692, 937, 2277
BstF5I	GGATG	7 cut(s)	669, 1266, 1377, 2031, 2073, 2203, 2273
BstFNI	CGCG	1 cut(s)	2279
BstMAI	GTCTC	3 cut(s)	853, 1066, 1559
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 665, 784, 793, 1187, 1685, 2137
BstNI	CCWGG	2 cut(s)	19, 1504
BstNSI	RCATGY	2 cut(s)	934, 1513
BstPAI	GACNNNNGTC	1 cut(s)	1289
BstSCI	CCNGG	4 cut(s)	17, 1502, 1661, 2484
BstSFI	CTRYAG	3 cut(s)	60, 1441, 1782
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	1 cut(s)	2279
BstV1I	GCAGC	6 cut(s)	46, 138, 668, 1165, 2196, 2420
BstV2I	GAAGAC	4 cut(s)	1371, 1627, 1694, 1837
BstX2I	RGATCY	3 cut(s)	1786, 1836, 2081
BstXI	CCANNNNNNTGG	3 cut(s)	18, 101, 222
BstYI	RGATCY	3 cut(s)	1786, 1836, 2081
BtgI	CCRYGG	4 cut(s)	424, 692, 937, 2277
BtsCI	GGATG	7 cut(s)	669, 1266, 1377, 2031, 2073, 2203, 2273
BtsI	GCAGTG	1 cut(s)	2413
BtsIMutI	CAGTG	4 cut(s)	1773, 1848, 2020, 2413
Cfr10I	RCCGGY	3 cut(s)	301, 1534, 2016
Cfr42I	CCGCGG	1 cut(s)	2280
CspAI	ACCGGT	1 cut(s)	1534
CspCI	CAANNNNNGTGG	2 cut(s)	1784, 1819
DdeI	CTNAG	7 cut(s)	446, 825, 1076, 1120, 2196, 2394, 2526
DriI	GACNNNNNGTC	1 cut(s)	1698
EaeI	YGGCCR	4 cut(s)	666, 1188, 1353, 2014
Eam1104I	CTCTTC	4 cut(s)	1619, 1848, 2118, 2249
Eam1105I	GACNNNNNGTC	1 cut(s)	1698
EarI	CTCTTC	4 cut(s)	1619, 1848, 2118, 2249
Ecl136II	GAGCTC	2 cut(s)	914, 1438
Eco130I	CCWWGG	6 cut(s)	82, 424, 692, 937, 1025, 2367
Eco24I	GRGCYC	3 cut(s)	129, 916, 1440
Eco31I	GGTCTC	1 cut(s)	853
Eco32I	GATATC	1 cut(s)	2491
Eco47I	GGWCC	4 cut(s)	454, 807, 1030, 1892
Eco53kI	GAGCTC	2 cut(s)	914, 1438
Eco57I	CTGAAG	3 cut(s)	1365, 1872, 1959
Eco88I	CYCGRG	1 cut(s)	1133
EcoICRI	GAGCTC	2 cut(s)	914, 1438
EcoO109I	RGGNCCY	4 cut(s)	125, 454, 1030, 1742
EcoRII	CCWGG	2 cut(s)	17, 1502
EcoRV	GATATC	1 cut(s)	2491
EcoT14I	CCWWGG	6 cut(s)	82, 424, 692, 937, 1025, 2367
EcoT38I	GRGCYC	3 cut(s)	129, 916, 1440
ErhI	CCWWGG	6 cut(s)	82, 424, 692, 937, 1025, 2367
FalI	AAGNNNNNCTT	4 cut(s)	990, 1022, 2447, 2479
FaqI	GGGAC	4 cut(s)	440, 958, 1043, 1520
FauI	CCCGC	2 cut(s)	871, 899
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	2 cut(s)	528, 1293
Fnu4HI	GCNGC	7 cut(s)	60, 152, 568, 657, 1179, 2185, 2434
FokI	GGATG	7 cut(s)	676, 1253, 1384, 2038, 2060, 2190, 2260
FriOI	GRGCYC	3 cut(s)	129, 916, 1440
Fsp4HI	GCNGC	7 cut(s)	60, 152, 568, 657, 1179, 2185, 2434
FspBI	CTAG	4 cut(s)	1763, 2045, 2430, 2504
GluI	GCNGC	7 cut(s)	60, 152, 568, 657, 1179, 2185, 2434
GsuI	CTGGAG	1 cut(s)	705
HapII	CCGG	8 cut(s)	186, 302, 728, 1535, 1602, 1662, 2017, 2486
HincII	GTYRAC	2 cut(s)	1669, 2167
HindII	GTYRAC	2 cut(s)	1669, 2167
HindIII	AAGCTT	3 cut(s)	356, 2329, 2456
HinfI	GANTC	5 cut(s)	268, 636, 1042, 1376, 1498
HpaII	CCGG	8 cut(s)	186, 302, 728, 1535, 1602, 1662, 2017, 2486
HphI	GGTGA	8 cut(s)	316, 355, 742, 854, 1037, 1598, 1892, 2008
Hpy166II	GTNNAC	5 cut(s)	529, 1294, 1479, 1669, 2167
Hpy8I	GTNNAC	5 cut(s)	529, 1294, 1479, 1669, 2167
Hpy99I	CGWCG	1 cut(s)	1622
HpyAV	CCTTC	6 cut(s)	398, 744, 1256, 1513, 1934, 2095
HpyCH4III	ACNGT	6 cut(s)	1219, 1288, 1402, 1431, 1696, 2164
HpyCH4IV	ACGT	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 665, 784, 793, 1187, 1685, 2137
HpyF3I	CTNAG	7 cut(s)	446, 825, 1076, 1120, 2196, 2394, 2526
HpySE526I	ACGT	1 cut(s)	279
KflI	GGGWCCC	1 cut(s)	1030
Kpn2I	TCCGGA	1 cut(s)	1601
KpnI	GGTACC	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	2016
KroNI	GCCGGC	1 cut(s)	2018
KspI	CCGCGG	1 cut(s)	2280
LguI	GCTCTTC	1 cut(s)	1619
LmnI	GCTCC	9 cut(s)	20, 30, 724, 911, 1435, 1715, 1726, 1939, 2128
Lsp1109I	GCAGC	6 cut(s)	46, 138, 668, 1165, 2196, 2420
LweI	GCATC	4 cut(s)	706, 1275, 1819, 1921
MaeI	CTAG	4 cut(s)	1763, 2045, 2430, 2504
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	6 cut(s)	130, 382, 514, 743, 1043, 1559
MflI	RGATCY	3 cut(s)	1786, 1836, 2081
MhlI	GDGCHC	4 cut(s)	129, 916, 1440, 1731
MlsI	TGGCCA	2 cut(s)	1190, 1355
MluCI	AATT	8 cut(s)	192, 319, 949, 1198, 1222, 1361, 1493, 1545
MluNI	TGGCCA	2 cut(s)	1190, 1355
MlyI	GAGTC	2 cut(s)	1051, 1385
MmeI	TCCRAC	2 cut(s)	1413, 2272
Mox20I	TGGCCA	2 cut(s)	1190, 1355
MroI	TCCGGA	1 cut(s)	1601
MroNI	GCCGGC	1 cut(s)	2016
MroXI	GAANNNNTTC	2 cut(s)	1389, 1527
MscI	TGGCCA	2 cut(s)	1190, 1355
MseI	TTAA	5 cut(s)	354, 735, 1221, 1655, 1962
MslI	CAYNNNNRTG	3 cut(s)	99, 1514, 1734
Msp20I	TGGCCA	2 cut(s)	1190, 1355
MspA1I	CMGCKG	2 cut(s)	59, 2279
MspI	CCGG	8 cut(s)	186, 302, 728, 1535, 1602, 1662, 2017, 2486
MspR9I	CCNGG	4 cut(s)	19, 1504, 1663, 2486
Mva1269I	GAATGC	1 cut(s)	1255
MvaI	CCWGG	2 cut(s)	19, 1504
MvnI	CGCG	1 cut(s)	2279
MwoI	GCNNNNNNNGC	7 cut(s)	65, 665, 784, 793, 1187, 1685, 2137
NaeI	GCCGGC	1 cut(s)	2018
NciI	CCSGG	2 cut(s)	1663, 2486
NcoI	CCATGG	3 cut(s)	424, 692, 937
NdeI	CATATG	1 cut(s)	136
NgoMIV	GCCGGC	1 cut(s)	2016
NlaIV	GGNNCC	8 cut(s)	9, 127, 422, 456, 1031, 1032, 1600, 2130
NmuCI	GTSAC	3 cut(s)	514, 1043, 1559
NspI	RCATGY	2 cut(s)	934, 1513
OliI	CACNNNNGTG	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	1133
PasI	CCCWGGG	1 cut(s)	1503
PciI	ACATGT	2 cut(s)	930, 1509
PciSI	GCTCTTC	1 cut(s)	1619
PctI	GAATGC	1 cut(s)	1255
PdiI	GCCGGC	1 cut(s)	2018
PdmI	GAANNNNTTC	2 cut(s)	1389, 1527
PfeI	GAWTC	3 cut(s)	268, 636, 1498
PinAI	ACCGGT	1 cut(s)	1534
PkrI	GCNGC	7 cut(s)	61, 153, 569, 658, 1180, 2186, 2435
PleI	GAGTC	2 cut(s)	1050, 1384
PpsI	GAGTC	2 cut(s)	1050, 1384
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	2 cut(s)	454, 1030
PscI	ACATGT	2 cut(s)	930, 1509
PshAI	GACNNNNGTC	1 cut(s)	1289
PshBI	ATTAAT	1 cut(s)	735
Psp124BI	GAGCTC	2 cut(s)	916, 1440
Psp5II	RGGWCCY	2 cut(s)	454, 1030
Psp6I	CCWGG	2 cut(s)	17, 1502
PspGI	CCWGG	2 cut(s)	17, 1502
PspN4I	GGNNCC	8 cut(s)	9, 127, 422, 456, 1031, 1032, 1600, 2130
PspOMI	GGGCCC	1 cut(s)	125
PspPPI	RGGWCCY	2 cut(s)	454, 1030
PspXI	VCTCGAGB	1 cut(s)	1133
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	3 cut(s)	1786, 1836, 2081
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	3 cut(s)	99, 1514, 1734
SacI	GAGCTC	2 cut(s)	916, 1440
SacII	CCGCGG	1 cut(s)	2280
SapI	GCTCTTC	1 cut(s)	1619
SaqAI	TTAA	5 cut(s)	354, 735, 1221, 1655, 1962
SatI	GCNGC	7 cut(s)	60, 152, 568, 657, 1179, 2185, 2434
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	2 cut(s)	1051, 1385
ScrFI	CCNGG	4 cut(s)	19, 1504, 1663, 2486
SduI	GDGCHC	4 cut(s)	129, 916, 1440, 1731
SfaNI	GCATC	4 cut(s)	706, 1275, 1819, 1921
SfcI	CTRYAG	3 cut(s)	60, 1441, 1782
Sfr274I	CTCGAG	1 cut(s)	1133
Sfr303I	CCGCGG	1 cut(s)	2280
SgrBI	CCGCGG	1 cut(s)	2280
SinI	GGWCC	4 cut(s)	454, 807, 1030, 1892
SlaI	CTCGAG	1 cut(s)	1133
SmiMI	CAYNNNNRTG	3 cut(s)	99, 1514, 1734
SmlI	CTYRAG	3 cut(s)	561, 1049, 1133
SmoI	CTYRAG	3 cut(s)	561, 1049, 1133
Sse9I	AATT	8 cut(s)	192, 319, 949, 1198, 1222, 1361, 1493, 1545
SsiI	CCGC	9 cut(s)	5, 567, 864, 892, 1253, 1713, 2277, 2279, 2452
SspI	AATATT	2 cut(s)	468, 1336
SspMI	CTAG	4 cut(s)	1763, 2045, 2430, 2504
SstI	GAGCTC	2 cut(s)	916, 1440
StyD4I	CCNGG	4 cut(s)	17, 1502, 1661, 2484
StyI	CCWWGG	6 cut(s)	82, 424, 692, 937, 1025, 2367
TaaI	ACNGT	6 cut(s)	1219, 1288, 1402, 1431, 1696, 2164
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	4 cut(s)	391, 1134, 1862, 2091
TaqII	GACCGA	3 cut(s)	728, 824, 1547
TasI	AATT	8 cut(s)	192, 319, 949, 1198, 1222, 1361, 1493, 1545
TatI	WGTACW	3 cut(s)	495, 828, 2311
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	3 cut(s)	268, 636, 1498
Tru1I	TTAA	5 cut(s)	354, 735, 1221, 1655, 1962
Tru9I	TTAA	5 cut(s)	354, 735, 1221, 1655, 1962
TscAI	CASTG	4 cut(s)	1780, 1855, 2027, 2420
TseFI	GTSAC	3 cut(s)	514, 1043, 1559
TseI	GCWGC	6 cut(s)	59, 151, 656, 1178, 2184, 2433
Tsp45I	GTSAC	3 cut(s)	514, 1043, 1559
TspDTI	ATGAA	8 cut(s)	185, 340, 394, 518, 1532, 2077, 2179, 2340
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	4 cut(s)	1780, 1855, 2027, 2420
VpaK11BI	GGWCC	4 cut(s)	454, 807, 1030, 1892
VspI	ATTAAT	1 cut(s)	735
XceI	RCATGY	2 cut(s)	934, 1513
XhoI	CTCGAG	1 cut(s)	1133
XmiI	GTMKAC	2 cut(s)	528, 1293
XmnI	GAANNNNTTC	2 cut(s)	1389, 1527
XspI	CTAG	4 cut(s)	1763, 2045, 2430, 2504
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.