Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000303.1

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Forward (+)

77427 .. 83984

Gene Structure 6558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000303.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2571 bp

atggtggtaccaagccaaagggttctcttgatatcttttctacttttgttggtctcgaccacattaatattccatgccaaaggtgacaagccgaaaccagaaggtggtggcgtggctgctggggacggtggggatggcggtgacggagaggttgccggggacactacagatgacggggcagtacagggaggaaagaagcagcttgcacacggtcccgtgacgtatgatgccaggtctttgatcattaatgggaaacatgagcttctattttctggttcaattcattatccacgtagcccggtggaaatgtggcctgatattctgaagaaggctaaacaaggaggtttgaacgtgattcaaacttatgtgttttggaacattcatgagcctgtgcaaggcaagtgggagttcgagggaaactatgatttggtgaagtttattaggttgatccaggagaatggaatgtatgctaccctcagggttggaccattcatccaagcagaatggaaccatggaggtcttccatattggctgagagaggtcccaggaatcactttccgatcagataatgaaccatacaagaaacacatggagcaatatgtgaacaagataatgaagatgatgaaggatgaaaagctattttctccacaaggaggtccaatcatcttagctcagattgagaatgagtacaatcaaatccaacttgcatatagagagttgggagatacatatgtgcagtgggcagcaaagctggcagttgggcagaatattggagtgccatggatcatgtgcaagcaaaaggatgctcctgatccagtgattaatacttgcaacggaaggcattgtggagatactttttcaggacctaacaaacccaacaagcctgctctatggactgagaattggacagctcagtaccgagtatttggtgaccctccttcacaaagagcagcagaagacattgcattttcagttgctcggtttttctccaagggtggggctctaaccaactactatatgtaccatggtggaacgaattttggaagaacaagtgctgttttcacaacaactcgttactacgatgaggctcctctcgatgaatatgctttgcaaagggacccgaaatggagtcacctcaaggacttgcacaaggctataaatctatgcaagaaaactttgcttactggaactcccggagaccaaaggttgggagaagagactgaggttcgtttctatgagaagccagggacagagtgtgctgctttcatagcaaataatcactcgaccatggaagcaaccgttaattggaggggacagaagtttctcctgccaccagcttccattagcatcctccccgactgcaagactgtggtcttcaatactcaacaaattgtatcccaacataattcaaggaactttgttacagctagtaaaaaaatgaactgggaaatgtctcccgaacccattgcaaccgtcgcgcaaatcccatccaatagtagggaaatgcaggagctctatctcttgctaaaagataccacagactatgcatggtacacaactagcattgacctaagtccgtatgacttgccgatgaaggagactatcaggccagttgtacgaattcctagtcttggtcatgcaatggctgtatttgtcaatgacgaatatattggatcgcaacacggtagccacgcagagaaaggtttcgtgttcgaggcacctgctaaaatgaagctaggggcgaaccatatctctctgctttgcattgtagtgggactcccagatagtggagcgtacatggagcacaggtatgcagggcctcgttctgtaacaatcctaggattgaacaccggaacaatcgacctgtccgcaaatggctggggacatagggctggcctgaatggtgaaaagctcgaagtgtacactgagaagggagctcagaaagtgaaatggactaaggcaacaggtaaaggaagggctctcacatggtacaagacaagttttgatgctcctccaggaagagacccttgtgctattcgaatgaccggtatgggcaagggaatggtatgggtgaatggtataagcatcggccgtcattggatgtccttcctctctcctcttggacaacctactcaaatcgagtaccacatcccaagagccttcattaagcctaagaatttccttgttgtattggaggaggagccagcagacccaaaagacattgagatcgtaacagtcaacagagacaccatctgcagccttattaaacaggactatccgggacatgttaagtactgggatagaaaaggcggcaagctcacaacagctcctggaaaaagtctccaaccatcagctctcctcaactgtccaaactacaaaaagatcagtgctattgaattcgcgggctatggcaatcctgacggcttctgtggagcctttaaattgggacaatgcaatgctcctgaagccaagaaggtcgtcgaagatgaaagtaatgcagtccaagcttatgaatcggagcagatagcacccatgaaggtccttggatcagcgcagcccccattgaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

856

Amino Acids

95.05

Weight (kDa)

8.05

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1729
Acc36I	ACCTGC	1 cut(s)	1729
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	2 cut(s)	7, 1717
AccB7I	CCANNNNNTGG	3 cut(s)	104, 1207, 1787
AccII	CGCG	2 cut(s)	1478, 2402
AciI	CCGC	4 cut(s)	138, 1869, 2310, 2402
AclWI	GGATC	5 cut(s)	442, 791, 806, 1681, 2554
AcoI	YGGCCR	1 cut(s)	2089
AcsI	RAATTY	4 cut(s)	1036, 1620, 2176, 2396
AcuI	CTGAAG	2 cut(s)	344, 2484
AfiI	CCNNNNNNNGG	9 cut(s)	104, 395, 653, 996, 1207, 1305, 1497, 1631, 1787
AflIII	ACRYGT	1 cut(s)	2284
AgeI	ACCGGT	1 cut(s)	2045
AgsI	TTSAA	8 cut(s)	279, 349, 359, 1378, 1410, 1846, 2396, 2566
AjnI	CCWGG	6 cut(s)	230, 450, 544, 1243, 2014, 2329
Alw21I	GWGCWC	3 cut(s)	1515, 1806, 1939
Alw26I	GTCTC	8 cut(s)	58, 1191, 1211, 1458, 1592, 2016, 2238, 2345
AlwI	GGATC	5 cut(s)	442, 791, 806, 1681, 2554
AlwNI	CAGNNNCTG	1 cut(s)	2330
AoxI	GGCC	5 cut(s)	311, 1607, 1817, 1894, 2089
ApeKI	GCWGC	7 cut(s)	116, 199, 743, 950, 1259, 2256, 2554
ApoI	RAATTY	4 cut(s)	1036, 1620, 2176, 2396
ArsI	GACNNNNNNTTYG	2 cut(s)	1612, 1644
AseI	ATTAAT	3 cut(s)	65, 246, 822
AsiGI	ACCGGT	1 cut(s)	2045
Asp700I	GAANNNNTTC	1 cut(s)	1703
Asp718I	GGTACC	1 cut(s)	7
AspA2I	CCTAGG	1 cut(s)	1837
AspLEI	GCGC	2 cut(s)	1480, 2554
AspS9I	GGNCC	8 cut(s)	212, 485, 541, 656, 863, 1117, 1817, 2539
AsuC2I	CCSGG	4 cut(s)	157, 299, 1194, 2280
AsuHPI	GGTGA	7 cut(s)	95, 152, 442, 941, 1124, 1916, 2083
AsuII	TTCGAA	1 cut(s)	2038
AvaII	GGWCC	7 cut(s)	212, 485, 541, 656, 863, 1117, 2539
AvrII	CCTAGG	1 cut(s)	1837
AxyI	CCTNAGG	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BanI	GGYRCC	2 cut(s)	7, 1717
BanII	GRGCYC	4 cut(s)	1003, 1515, 1939, 1981
BbsI	GAAGAC	3 cut(s)	512, 963, 1366
Bbv12I	GWGCWC	3 cut(s)	1515, 1806, 1939
BbvI	GCAGC	7 cut(s)	103, 211, 755, 962, 1246, 2268, 2566
BccI	CCATC	4 cut(s)	128, 1495, 2258, 2356
BceAI	ACGGC	2 cut(s)	2076, 2437
BcgI	CGANNNNNNTGC	6 cut(s)	1085, 1119, 1448, 1482, 1703, 1737
BciT130I	CCWGG	6 cut(s)	232, 452, 546, 1245, 2016, 2331
BciVI	GTATCC	1 cut(s)	1405
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	4 cut(s)	157, 299, 1194, 2280
BcoDI	GTCTC	8 cut(s)	58, 1191, 1211, 1458, 1592, 2016, 2238, 2345
BfaI	CTAG	5 cut(s)	1428, 1560, 1626, 1736, 1838
BfmI	CTRYAG	2 cut(s)	165, 2254
BfuAI	ACCTGC	1 cut(s)	1729
BfuI	GTATCC	1 cut(s)	1405
BisI	GCNGC	8 cut(s)	117, 200, 744, 951, 1260, 2257, 2311, 2555
BlnI	CCTAGG	1 cut(s)	1837
BlsI	GCNGC	8 cut(s)	118, 201, 745, 952, 1261, 2258, 2312, 2556
BmcAI	AGTACT	1 cut(s)	2294
Bme18I	GGWCC	7 cut(s)	212, 485, 541, 656, 863, 1117, 2539
BmgT120I	GGNCC	8 cut(s)	212, 485, 541, 656, 863, 1117, 1817, 2539
BmrI	ACTGGG	2 cut(s)	1453, 2305
BmsI	GCATC	5 cut(s)	217, 793, 1356, 1996, 2094
BmuI	ACTGGG	2 cut(s)	1453, 2305
BoxI	GACNNNNGTC	2 cut(s)	1370, 1572
BpiI	GAAGAC	3 cut(s)	512, 963, 1366
BpmI	CTGGAG	1 cut(s)	1998
Bpu14I	TTCGAA	1 cut(s)	2038
BpuEI	CTTGAG	1 cut(s)	1121
BpuMI	CCSGG	4 cut(s)	157, 299, 1194, 2280
BsaAI	YACGTR	1 cut(s)	293
BsaI	GGTCTC	3 cut(s)	58, 1191, 2016
BsaWI	WCCGGW	2 cut(s)	1850, 2045
BsaXI	ACNNNNNCTCC	6 cut(s)	1174, 1204, 1793, 1823, 2311, 2341
Bsc4I	CCNNNNNNNGG	9 cut(s)	104, 395, 653, 996, 1207, 1305, 1497, 1631, 1787
Bse118I	RCCGGY	1 cut(s)	2045
Bse1I	ACTGG	5 cut(s)	815, 1189, 1448, 1610, 2300
Bse21I	CCTNAGG	1 cut(s)	476
Bse3DI	GCAATG	4 cut(s)	960, 1464, 1647, 2461
BseBI	CCWGG	6 cut(s)	232, 452, 546, 1245, 2016, 2331
BseGI	GGATG	8 cut(s)	139, 492, 634, 808, 1347, 1487, 2106, 2148
BseLI	CCNNNNNNNGG	9 cut(s)	104, 395, 653, 996, 1207, 1305, 1497, 1631, 1787
BseMI	GCAATG	4 cut(s)	960, 1464, 1647, 2461
BseMII	CTCAG	8 cut(s)	490, 524, 686, 888, 926, 1212, 1917, 1952
BseNI	ACTGG	5 cut(s)	815, 1189, 1448, 1610, 2300
BseRI	GAGGAG	6 cut(s)	1080, 2001, 2106, 2210, 2213, 2348
BseX3I	CGGCCG	1 cut(s)	2089
BseXI	GCAGC	7 cut(s)	103, 211, 755, 962, 1246, 2268, 2566
BseYI	CCCAGC	2 cut(s)	119, 1878
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	1478, 2402
Bsh1285I	CGRYCG	1 cut(s)	2092
BshFI	GGCC	5 cut(s)	313, 1609, 1819, 1896, 2091
BshNI	GGYRCC	2 cut(s)	7, 1717
BshTI	ACCGGT	1 cut(s)	2045
BsiEI	CGRYCG	1 cut(s)	2092
BsiHKAI	GWGCWC	3 cut(s)	1515, 1806, 1939
BsiSI	CCGG	6 cut(s)	156, 299, 1194, 1851, 2046, 2279
BslI	CCNNNNNNNGG	9 cut(s)	104, 395, 653, 996, 1207, 1305, 1497, 1631, 1787
BsmAI	GTCTC	8 cut(s)	58, 1191, 1211, 1458, 1592, 2016, 2238, 2345
BsnI	GGCC	5 cut(s)	313, 1609, 1819, 1896, 2091
Bso31I	GGTCTC	3 cut(s)	58, 1191, 2016
Bsp119I	TTCGAA	1 cut(s)	2038
Bsp1286I	GDGCHC	5 cut(s)	1003, 1515, 1806, 1939, 1981
Bsp1407I	TGTACA	1 cut(s)	1920
Bsp143I	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
Bsp19I	CCATGG	4 cut(s)	511, 779, 1024, 1287
BspACI	CCGC	4 cut(s)	138, 1869, 2310, 2402
BspANI	GGCC	5 cut(s)	313, 1609, 1819, 1896, 2091
BspCNI	CTCAG	8 cut(s)	489, 525, 685, 889, 925, 1213, 1918, 1951
BspFNI	CGCG	2 cut(s)	1478, 2402
BspHI	TCATGA	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	2258
BspMI	ACCTGC	1 cut(s)	1729
BspPI	GGATC	5 cut(s)	442, 791, 806, 1681, 2554
BspT104I	TTCGAA	1 cut(s)	2038
BspT107I	GGYRCC	2 cut(s)	7, 1717
BspTNI	GGTCTC	3 cut(s)	58, 1191, 2016
BsrDI	GCAATG	4 cut(s)	960, 1464, 1647, 2461
BsrFI	RCCGGY	1 cut(s)	2045
BsrGI	TGTACA	1 cut(s)	1920
BsrI	ACTGG	5 cut(s)	815, 1189, 1448, 1610, 2300
BssAI	RCCGGY	1 cut(s)	2045
BssMI	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
BssT1I	CCWWGG	7 cut(s)	511, 779, 990, 1024, 1287, 1837, 2542
Bst2UI	CCWGG	6 cut(s)	232, 452, 546, 1245, 2016, 2331
Bst4CI	ACNGT	8 cut(s)	128, 212, 1300, 1369, 1474, 1685, 2236, 2366
Bst6I	CTCTTC	2 cut(s)	1209, 2014
BstAUI	TGTACA	1 cut(s)	1920
BstBAI	YACGTR	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	2038
BstC8I	GCNNGC	8 cut(s)	204, 753, 794, 885, 1894, 2205, 2315, 2404
BstDSI	CCRYGG	4 cut(s)	511, 779, 1024, 1287
BstEII	GGTNACC	1 cut(s)	929
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	8 cut(s)	139, 492, 634, 808, 1347, 1487, 2106, 2148
BstFNI	CGCG	2 cut(s)	1478, 2402
BstHHI	GCGC	2 cut(s)	1480, 2554
BstKTI	GATC	9 cut(s)	243, 450, 563, 786, 814, 1676, 2229, 2385, 2549
BstMAI	GTCTC	8 cut(s)	58, 1191, 1211, 1458, 1592, 2016, 2238, 2345
BstMBI	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
BstMCI	CGRYCG	1 cut(s)	2092
BstMWI	GCNNNNNNNGC	5 cut(s)	752, 1268, 1475, 2465, 2504
BstNI	CCWGG	6 cut(s)	232, 452, 546, 1245, 2016, 2331
BstNSI	RCATGY	1 cut(s)	2288
BstPAI	GACNNNNGTC	2 cut(s)	1370, 1572
BstPI	GGTNACC	1 cut(s)	929
BstSFI	CTRYAG	2 cut(s)	165, 2254
BstUI	CGCG	2 cut(s)	1478, 2402
BstV1I	GCAGC	7 cut(s)	103, 211, 755, 962, 1246, 2268, 2566
BstV2I	GAAGAC	3 cut(s)	512, 963, 1366
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstZI	CGGCCG	1 cut(s)	2089
Bsu36I	CCTNAGG	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	1405
BsuRI	GGCC	5 cut(s)	313, 1609, 1819, 1896, 2091
BtgI	CCRYGG	4 cut(s)	511, 779, 1024, 1287
BtsCI	GGATG	8 cut(s)	139, 492, 634, 808, 1347, 1487, 2106, 2148
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	4 cut(s)	743, 822, 1923, 2392
BveI	ACCTGC	1 cut(s)	1729
Cac8I	GCNNGC	8 cut(s)	204, 753, 794, 885, 1894, 2205, 2315, 2404
CaiI	CAGNNNCTG	1 cut(s)	2330
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	1480, 2554
Cfr10I	RCCGGY	1 cut(s)	2045
Cfr13I	GGNCC	8 cut(s)	212, 485, 541, 656, 863, 1117, 1817, 2539
CspAI	ACCGGT	1 cut(s)	2045
CspCI	CAANNNNNGTGG	2 cut(s)	383, 418
DpnI	GATC	9 cut(s)	242, 449, 562, 785, 813, 1675, 2228, 2384, 2548
DpnII	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
DraI	TTTAAA	1 cut(s)	2440
EaeI	YGGCCR	1 cut(s)	2089
EagI	CGGCCG	1 cut(s)	2089
Eam1104I	CTCTTC	2 cut(s)	1209, 2014
EarI	CTCTTC	2 cut(s)	1209, 2014
Ecl136II	GAGCTC	2 cut(s)	1513, 1937
EclXI	CGGCCG	1 cut(s)	2089
Eco130I	CCWWGG	7 cut(s)	511, 779, 990, 1024, 1287, 1837, 2542
Eco24I	GRGCYC	4 cut(s)	1003, 1515, 1939, 1981
Eco31I	GGTCTC	3 cut(s)	58, 1191, 2016
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	7 cut(s)	212, 485, 541, 656, 863, 1117, 2539
Eco52I	CGGCCG	1 cut(s)	2089
Eco53kI	GAGCTC	2 cut(s)	1513, 1937
Eco57I	CTGAAG	2 cut(s)	344, 2484
Eco81I	CCTNAGG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	929
EcoICRI	GAGCTC	2 cut(s)	1513, 1937
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	5 cut(s)	541, 863, 1117, 1817, 2539
EcoO65I	GGTNACC	1 cut(s)	929
EcoRI	GAATTC	2 cut(s)	1620, 2396
EcoRII	CCWGG	6 cut(s)	230, 450, 544, 1243, 2014, 2329
EcoRV	GATATC	1 cut(s)	33
EcoT14I	CCWWGG	7 cut(s)	511, 779, 990, 1024, 1287, 1837, 2542
EcoT22I	ATGCAT	1 cut(s)	1549
EcoT38I	GRGCYC	4 cut(s)	1003, 1515, 1939, 1981
ErhI	CCWWGG	7 cut(s)	511, 779, 990, 1024, 1287, 1837, 2542
FalI	AAGNNNNNCTT	2 cut(s)	2011, 2043
FauI	CCCGC	1 cut(s)	2395
FauNDI	CATATG	1 cut(s)	730
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	8 cut(s)	117, 200, 744, 951, 1260, 2257, 2311, 2555
FokI	GGATG	8 cut(s)	146, 479, 641, 815, 1334, 1474, 2113, 2135
FriOI	GRGCYC	4 cut(s)	1003, 1515, 1939, 1981
Fsp4HI	GCNGC	8 cut(s)	117, 200, 744, 951, 1260, 2257, 2311, 2555
FspBI	CTAG	5 cut(s)	1428, 1560, 1626, 1736, 1838
GlaI	GCGC	2 cut(s)	1479, 2553
GluI	GCNGC	8 cut(s)	117, 200, 744, 951, 1260, 2257, 2311, 2555
GsaI	CCCAGC	2 cut(s)	123, 1882
GsuI	CTGGAG	1 cut(s)	1998
HaeIII	GGCC	5 cut(s)	313, 1609, 1819, 1896, 2091
HapII	CCGG	6 cut(s)	156, 299, 1194, 1851, 2046, 2279
HhaI	GCGC	2 cut(s)	1480, 2554
Hin6I	GCGC	2 cut(s)	1478, 2552
HinP1I	GCGC	2 cut(s)	1478, 2552
HincII	GTYRAC	1 cut(s)	2239
HindII	GTYRAC	1 cut(s)	2239
HindIII	AAGCTT	1 cut(s)	2505
HinfI	GANTC	5 cut(s)	355, 549, 1129, 1776, 2513
HpaII	CCGG	6 cut(s)	156, 299, 1194, 1851, 2046, 2279
HphI	GGTGA	7 cut(s)	95, 152, 442, 941, 1124, 1916, 2083
Hpy166II	GTNNAC	5 cut(s)	604, 1554, 1921, 1923, 2239
Hpy188I	TCNGA	6 cut(s)	324, 560, 565, 675, 1941, 2518
Hpy188III	TCNNGA	9 cut(s)	28, 55, 383, 809, 861, 1094, 1457, 2417, 2462
Hpy8I	GTNNAC	5 cut(s)	604, 1554, 1921, 1923, 2239
Hpy99I	CGWCG	2 cut(s)	1478, 2483
HpyCH4III	ACNGT	8 cut(s)	128, 212, 1300, 1369, 1474, 1685, 2236, 2366
HpyCH4IV	ACGT	3 cut(s)	221, 292, 351
HpyF10VI	GCNNNNNNNGC	5 cut(s)	752, 1268, 1475, 2465, 2504
HpySE526I	ACGT	3 cut(s)	221, 292, 351
HspAI	GCGC	2 cut(s)	1478, 2552
KflI	GGGWCCC	1 cut(s)	1117
KpnI	GGTACC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
Lsp1109I	GCAGC	7 cut(s)	103, 211, 755, 962, 1246, 2268, 2566
LweI	GCATC	5 cut(s)	217, 793, 1356, 1996, 2094
MaeI	CTAG	5 cut(s)	1428, 1560, 1626, 1736, 1838
MaeII	ACGT	3 cut(s)	221, 292, 351
MaeIII	GTNAC	9 cut(s)	83, 140, 217, 929, 1073, 1130, 1420, 1828, 2230
MalI	GATC	9 cut(s)	242, 449, 562, 785, 813, 1675, 2228, 2384, 2548
MboI	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
MboII	GAAGA	9 cut(s)	337, 512, 628, 968, 1056, 1226, 1366, 2031, 2495
MhlI	GDGCHC	5 cut(s)	1003, 1515, 1806, 1939, 1981
MlyI	GAGTC	2 cut(s)	1138, 1770
MmeI	TCCRAC	3 cut(s)	463, 724, 2368
Mph1103I	ATGCAT	1 cut(s)	1549
MroXI	GAANNNNTTC	1 cut(s)	1703
MseI	TTAA	8 cut(s)	65, 246, 822, 1302, 2166, 2265, 2289, 2439
MslI	CAYNNNNRTG	2 cut(s)	1769, 1809
MspI	CCGG	6 cut(s)	156, 299, 1194, 1851, 2046, 2279
MvaI	CCWGG	6 cut(s)	232, 452, 546, 1245, 2016, 2331
MvnI	CGCG	2 cut(s)	1478, 2402
MwoI	GCNNNNNNNGC	5 cut(s)	752, 1268, 1475, 2465, 2504
NciI	CCSGG	4 cut(s)	157, 299, 1194, 2280
NcoI	CCATGG	4 cut(s)	511, 779, 1024, 1287
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
NmuCI	GTSAC	5 cut(s)	83, 140, 217, 929, 1130
NsiI	ATGCAT	1 cut(s)	1549
NspI	RCATGY	1 cut(s)	2288
NspV	TTCGAA	1 cut(s)	2038
PagI	TCATGA	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	1729
PciI	ACATGT	1 cut(s)	2284
PdmI	GAANNNNTTC	1 cut(s)	1703
PfeI	GAWTC	3 cut(s)	355, 549, 2513
PflMI	CCANNNNNTGG	3 cut(s)	104, 1207, 1787
PfoI	TCCNGGA	5 cut(s)	450, 1192, 2014, 2278, 2329
PinAI	ACCGGT	1 cut(s)	2045
PkrI	GCNGC	8 cut(s)	118, 201, 745, 952, 1261, 2258, 2312, 2556
PleI	GAGTC	2 cut(s)	1137, 1770
PpsI	GAGTC	2 cut(s)	1137, 1770
Ppu21I	YACGTR	1 cut(s)	293
PpuMI	RGGWCCY	4 cut(s)	541, 863, 1117, 2539
PscI	ACATGT	1 cut(s)	2284
PshAI	GACNNNNGTC	2 cut(s)	1370, 1572
PshBI	ATTAAT	3 cut(s)	65, 246, 822
Psp124BI	GAGCTC	2 cut(s)	1515, 1939
Psp5II	RGGWCCY	4 cut(s)	541, 863, 1117, 2539
Psp6I	CCWGG	6 cut(s)	230, 450, 544, 1243, 2014, 2329
PspEI	GGTNACC	1 cut(s)	929
PspFI	CCCAGC	2 cut(s)	119, 1878
PspGI	CCWGG	6 cut(s)	230, 450, 544, 1243, 2014, 2329
PspPI	GGNCC	8 cut(s)	212, 485, 541, 656, 863, 1117, 1817, 2539
PspPPI	RGGWCCY	4 cut(s)	541, 863, 1117, 2539
PstI	CTGCAG	1 cut(s)	2258
PstNI	CAGNNNCTG	1 cut(s)	2330
RseI	CAYNNNNRTG	2 cut(s)	1769, 1809
SacI	GAGCTC	2 cut(s)	1515, 1939
SaqAI	TTAA	8 cut(s)	65, 246, 822, 1302, 2166, 2265, 2289, 2439
SatI	GCNGC	8 cut(s)	117, 200, 744, 951, 1260, 2257, 2311, 2555
Sau3AI	GATC	9 cut(s)	240, 447, 560, 783, 811, 1673, 2226, 2382, 2546
Sau96I	GGNCC	8 cut(s)	212, 485, 541, 656, 863, 1117, 1817, 2539
ScaI	AGTACT	1 cut(s)	2294
SchI	GAGTC	2 cut(s)	1138, 1770
SduI	GDGCHC	5 cut(s)	1003, 1515, 1806, 1939, 1981
SfaNI	GCATC	5 cut(s)	217, 793, 1356, 1996, 2094
SfcI	CTRYAG	2 cut(s)	165, 2254
SfuI	TTCGAA	1 cut(s)	2038
SinI	GGWCC	7 cut(s)	212, 485, 541, 656, 863, 1117, 2539
SmiMI	CAYNNNNRTG	2 cut(s)	1769, 1809
SmlI	CTYRAG	1 cut(s)	1136
SmoI	CTYRAG	1 cut(s)	1136
SsiI	CCGC	4 cut(s)	138, 1869, 2310, 2402
SspI	AATATT	2 cut(s)	69, 769
SspMI	CTAG	5 cut(s)	1428, 1560, 1626, 1736, 1838
SstI	GAGCTC	2 cut(s)	1515, 1939
StyI	CCWWGG	7 cut(s)	511, 779, 990, 1024, 1287, 1837, 2542
TaaI	ACNGT	8 cut(s)	128, 212, 1300, 1369, 1474, 1685, 2236, 2366
TaiI	ACGT	3 cut(s)	224, 295, 354
TatI	WGTACW	4 cut(s)	181, 687, 1920, 2292
TauI	GCSGC	1 cut(s)	2313
TfiI	GAWTC	3 cut(s)	355, 549, 2513
Tru1I	TTAA	8 cut(s)	65, 246, 822, 1302, 2166, 2265, 2289, 2439
Tru9I	TTAA	8 cut(s)	65, 246, 822, 1302, 2166, 2265, 2289, 2439
TscAI	CASTG	4 cut(s)	743, 822, 1930, 2392
TseFI	GTSAC	5 cut(s)	83, 140, 217, 929, 1130
TseI	GCWGC	7 cut(s)	116, 199, 743, 950, 1259, 2256, 2554
Tsp45I	GTSAC	5 cut(s)	83, 140, 217, 929, 1130
TspGWI	ACGGA	3 cut(s)	159, 849, 1566
TspRI	CASTG	4 cut(s)	743, 822, 1930, 2392
Van91I	CCANNNNNTGG	3 cut(s)	104, 1207, 1787
VpaK11BI	GGWCC	7 cut(s)	212, 485, 541, 656, 863, 1117, 2539
VspI	ATTAAT	3 cut(s)	65, 246, 822
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	4 cut(s)	1036, 1620, 2176, 2396
XceI	RCATGY	1 cut(s)	2288
XmaJI	CCTAGG	1 cut(s)	1837
XmnI	GAANNNNTTC	1 cut(s)	1703
XspI	CTAG	5 cut(s)	1428, 1560, 1626, 1736, 1838
ZrmI	AGTACT	1 cut(s)	2294
Zsp2I	ATGCAT	1 cut(s)	1549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.