Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Reverse (-)

42832934 .. 42834169

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1284600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCGGTACCTATCAGTCGAACTCTCTTGATTTCTCTTGTTTCAGTTGTGATTGCAGCCACGCTAGTCCATGCCAAAGGCCATGGACATCATGCACACGGTGGGCATCATCATCATCATCAGAATCAATCAATGCAGGTTGGCCTCATGACATATGATGGAAGGTCACTGATTATCAATGGGAAACGCGCGCTTCTATTTTTGGGTTCAATCCACTACCCGCGAAGCACGGCAGAAATGTGGCCTGATATTCTCGAGAAGGCCAAACGCGGAGGCTTAAATTTGATTCAAACTTATATGTTTTGGAATATTCATGAGCCTGTGCAAGGGCAATTCGACTTTGAAGGAAACTATGATGTGGTGAAGTTCATCAAGCTTGTGCATGAACACGGAATGTATGCTACCATTAGGCTTGGGCCGTTCATCCAAGCTGAATGGAACCACGGAGGACTTCCTTATTGGCTAAGGGAGGTCCCCAGAATCATATTCCGCTTTGATAACACAGCATACAAGTACCACATGAAGAATTATGTGGATATGATTGTGAGCAGGTTGAGAGAGGCGAAGCTCTTTGCTCCACAGGGAGGCCCTATCATTTTGGCGCAGATTGAAAATGAGTACAACATGGTCCAGCTTGCATATAGAGAATTGGGAAATAGTTACGTGAGGTGGGCAGCAATGATCTCGGTGAACCAAAACATCGGAGTGCCATGGATCATGTGCAAGCACAAGGACGCTCTTGATCCGGTGATTAATACTTGCAATGGAAGGCATTGCAGAGATACTTTCACAGGCCCTAATAAACCCAACAAGCCATCTTTATGGACTGAGAATTGGACTGCTCAATACAGAGTATTTGGTGACCCTCATTCGCAAAGAGCGGCAGAGGATAGTGCATTTTCCGTTGCACGCTATTTATCAAAGAACGGAGCTCTAACCAACTACTATATGTACCATGGTGGCACAAATTTTGGACGAACAAGTTCTATTTTCACAACCACCTGCTACTATGACGAAGCTCCTCTCGATGAATATGGTTTGCCAAGGGATCCTAAGTGGAGTCACCTCAAAGACTTGCACAAGGCTTTGAAGCTTTCCAGGAAGGCTTTGCTTTGGGGAGTTCCAGGAGTCCAGAAGATTAGCGCAGACACCGAGGTTCATTTCTATGAGATGCCAACAACAGGCACTTGTGCTGCTTTCGTGACAAACAACAATTTCAAAACTGAAGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

412

Amino Acids

46.93

Weight (kDa)

9.05

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	56 - 362	1.2e-110	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	77 - 213	8.8e-06	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1010
Acc36I	ACCTGC	3 cut(s)	127, 540, 1010
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AccBSI	CCGCTC	1 cut(s)	881
AccII	CGCG	4 cut(s)	189, 191, 223, 270
AciI	CCGC	5 cut(s)	5, 221, 270, 490, 881
AclWI	GGATC	4 cut(s)	722, 737, 1043, 1056
AcsI	RAATTY	2 cut(s)	280, 967
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	4 cut(s)	9, 515, 620, 953
AfiI	CCNNNNNNNGG	3 cut(s)	326, 584, 1181
AgsI	TTSAA	6 cut(s)	210, 290, 344, 611, 1090, 1219
AjnI	CCWGG	2 cut(s)	1097, 1123
AluBI	AGCT	7 cut(s)	376, 431, 568, 634, 932, 1019, 1093
AluI	AGCT	7 cut(s)	376, 431, 568, 634, 932, 1019, 1093
Alw21I	GWGCWC	1 cut(s)	934
AlwI	GGATC	4 cut(s)	722, 737, 1043, 1056
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	7 cut(s)	79, 142, 242, 261, 416, 586, 793
ApeKI	GCWGC	3 cut(s)	56, 674, 1193
ApoI	RAATTY	2 cut(s)	280, 967
AseI	ATTAAT	1 cut(s)	753
Asp700I	GAANNNNTTC	1 cut(s)	982
Asp718I	GGTACC	1 cut(s)	7
AspLEI	GCGC	4 cut(s)	191, 193, 604, 1145
AspS9I	GGNCC	5 cut(s)	416, 472, 587, 628, 794
AsuHPI	GGTGA	5 cut(s)	373, 700, 760, 872, 1055
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	472, 628
BamHI	GGATCC	1 cut(s)	1048
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	934
Bbv12I	GWGCWC	1 cut(s)	934
BbvI	GCAGC	3 cut(s)	68, 686, 1180
BccI	CCATC	2 cut(s)	152, 823
BceAI	ACGGC	2 cut(s)	246, 403
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BciT130I	CCWGG	2 cut(s)	1099, 1125
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	3 cut(s)	127, 540, 1010
BisI	GCNGC	4 cut(s)	57, 675, 882, 1194
BlsI	GCNGC	4 cut(s)	58, 676, 883, 1195
Bme1390I	CCNGG	2 cut(s)	1099, 1125
Bme18I	GGWCC	2 cut(s)	472, 628
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	5 cut(s)	416, 472, 587, 628, 794
BmiI	GGNNCC	4 cut(s)	9, 440, 474, 1050
BmrFI	CCNGG	2 cut(s)	1099, 1125
BmsI	GCATC	2 cut(s)	115, 1161
Bpu10I	CCTNAGC	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	6 cut(s)	82, 442, 710, 955, 1043, 1152
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 584, 1181
Bse3DI	GCAATG	3 cut(s)	684, 769, 772
BseBI	CCWGG	2 cut(s)	1099, 1125
BseDI	CCNNGG	6 cut(s)	82, 442, 710, 955, 1043, 1152
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	326, 584, 1181
BseMI	GCAATG	3 cut(s)	684, 769, 772
BseMII	CTCAG	1 cut(s)	819
BsePI	GCGCGC	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	1011
BseXI	GCAGC	3 cut(s)	68, 686, 1180
Bsh1236I	CGCG	4 cut(s)	189, 191, 223, 270
BshFI	GGCC	7 cut(s)	81, 144, 244, 263, 418, 588, 795
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	934
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	326, 584, 1181
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	7 cut(s)	81, 144, 244, 263, 418, 588, 795
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	934
Bsp143I	GATC	4 cut(s)	681, 714, 742, 1048
Bsp19I	CCATGG	3 cut(s)	82, 710, 955
BspACI	CCGC	5 cut(s)	5, 221, 270, 490, 881
BspANI	GGCC	7 cut(s)	81, 144, 244, 263, 418, 588, 795
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	4 cut(s)	189, 191, 223, 270
BspHI	TCATGA	2 cut(s)	147, 313
BspLI	GGNNCC	4 cut(s)	9, 440, 474, 1050
BspMI	ACCTGC	3 cut(s)	127, 540, 1010
BspPI	GGATC	4 cut(s)	722, 737, 1043, 1056
BspT107I	GGYRCC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	881
BsrDI	GCAATG	3 cut(s)	684, 769, 772
BssECI	CCNNGG	6 cut(s)	82, 442, 710, 955, 1043, 1152
BssHII	GCGCGC	1 cut(s)	189
BssMI	GATC	4 cut(s)	681, 714, 742, 1048
BssT1I	CCWWGG	4 cut(s)	82, 710, 955, 1043
Bst2UI	CCWGG	2 cut(s)	1099, 1125
Bst4CI	ACNGT	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	4 cut(s)	191, 636, 725, 910
BstDEI	CTNAG	3 cut(s)	464, 828, 1053
BstDSI	CCRYGG	4 cut(s)	82, 442, 710, 955
BstEII	GGTNACC	1 cut(s)	860
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	4 cut(s)	189, 191, 223, 270
BstHHI	GCGC	4 cut(s)	191, 193, 604, 1145
BstKTI	GATC	4 cut(s)	684, 717, 745, 1051
BstMBI	GATC	4 cut(s)	681, 714, 742, 1048
BstNI	CCWGG	2 cut(s)	1099, 1125
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	2 cut(s)	1097, 1123
BstUI	CGCG	4 cut(s)	189, 191, 223, 270
BstV1I	GCAGC	3 cut(s)	68, 686, 1180
BstX2I	RGATCY	1 cut(s)	1048
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	1048
BsuRI	GGCC	7 cut(s)	81, 144, 244, 263, 418, 588, 795
BtgI	CCRYGG	4 cut(s)	82, 442, 710, 955
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	3 cut(s)	127, 540, 1010
Cac8I	GCNNGC	4 cut(s)	191, 636, 725, 910
CciI	TCATGA	2 cut(s)	147, 313
CfoI	GCGC	4 cut(s)	191, 193, 604, 1145
Cfr13I	GGNCC	5 cut(s)	416, 472, 587, 628, 794
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	4 cut(s)	8, 514, 619, 952
CviQI	GTAC	4 cut(s)	8, 514, 619, 952
DdeI	CTNAG	3 cut(s)	464, 828, 1053
DpnI	GATC	4 cut(s)	683, 716, 744, 1050
DpnII	GATC	4 cut(s)	681, 714, 742, 1048
DraIII	CACNNNGTG	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	4 cut(s)	82, 710, 955, 1043
Eco24I	GRGCYC	1 cut(s)	934
Eco47I	GGWCC	2 cut(s)	472, 628
Eco53kI	GAGCTC	1 cut(s)	932
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	932
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	3 cut(s)	472, 587, 794
EcoO65I	GGTNACC	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	1097, 1123
EcoT14I	CCWWGG	4 cut(s)	82, 710, 955, 1043
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	4 cut(s)	82, 710, 955, 1043
FaqI	GGGAC	1 cut(s)	458
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	57, 675, 882, 1194
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	4 cut(s)	57, 675, 882, 1194
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	4 cut(s)	190, 192, 603, 1144
GluI	GCNGC	4 cut(s)	57, 675, 882, 1194
HaeIII	GGCC	7 cut(s)	81, 144, 244, 263, 418, 588, 795
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	743
HhaI	GCGC	4 cut(s)	191, 193, 604, 1145
Hin6I	GCGC	4 cut(s)	189, 191, 602, 1143
HinP1I	GCGC	4 cut(s)	189, 191, 602, 1143
HindIII	AAGCTT	2 cut(s)	374, 1091
HinfI	GANTC	5 cut(s)	124, 286, 480, 1060, 1128
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	5 cut(s)	373, 700, 760, 872, 1055
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	2 cut(s)	123, 704
Hpy188III	TCNNGA	9 cut(s)	28, 148, 254, 256, 314, 740, 1025, 1132, 1201
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	5 cut(s)	156, 253, 338, 762, 1096
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	663
HpyF3I	CTNAG	3 cut(s)	464, 828, 1053
HpySE526I	ACGT	1 cut(s)	663
HspAI	GCGC	4 cut(s)	189, 191, 602, 1143
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	4 cut(s)	681, 714, 742, 1048
LmnI	GCTCC	3 cut(s)	580, 929, 1024
Lsp1109I	GCAGC	3 cut(s)	68, 686, 1180
LweI	GCATC	2 cut(s)	115, 1161
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	5 cut(s)	165, 659, 860, 1061, 1201
MalI	GATC	4 cut(s)	683, 716, 744, 1050
MbiI	CCGCTC	1 cut(s)	881
MboI	GATC	4 cut(s)	681, 714, 742, 1048
MboII	GAAGA	2 cut(s)	535, 1147
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	1 cut(s)	934
MluCI	AATT	7 cut(s)	280, 332, 526, 647, 832, 967, 1213
MlyI	GAGTC	2 cut(s)	1069, 1137
MroXI	GAANNNNTTC	1 cut(s)	982
MseI	TTAA	3 cut(s)	278, 753, 1234
MslI	CAYNNNNRTG	3 cut(s)	704, 820, 1164
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	1099, 1125
MvaI	CCWGG	2 cut(s)	1099, 1125
MvnI	CGCG	4 cut(s)	189, 191, 223, 270
NcoI	CCATGG	3 cut(s)	82, 710, 955
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	4 cut(s)	681, 714, 742, 1048
NlaIV	GGNNCC	4 cut(s)	9, 440, 474, 1050
NmuCI	GTSAC	4 cut(s)	165, 860, 1061, 1201
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	2 cut(s)	147, 313
PaqCI	CACCTGC	1 cut(s)	1010
PauI	GCGCGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	3 cut(s)	124, 286, 480
PfoI	TCCNGGA	2 cut(s)	1097, 1123
PkrI	GCNGC	4 cut(s)	58, 676, 883, 1195
PleI	GAGTC	2 cut(s)	1068, 1136
PpsI	GAGTC	2 cut(s)	1068, 1136
Ppu21I	YACGTR	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	1097, 1123
PspEI	GGTNACC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	1097, 1123
PspN4I	GGNNCC	4 cut(s)	9, 440, 474, 1050
PspPI	GGNCC	5 cut(s)	416, 472, 587, 628, 794
PspPPI	RGGWCCY	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	1048
PteI	GCGCGC	1 cut(s)	189
RsaI	GTAC	4 cut(s)	9, 515, 620, 953
RsaNI	GTAC	4 cut(s)	8, 514, 619, 952
RseI	CAYNNNNRTG	3 cut(s)	704, 820, 1164
SacI	GAGCTC	1 cut(s)	934
SaqAI	TTAA	3 cut(s)	278, 753, 1234
SatI	GCNGC	4 cut(s)	57, 675, 882, 1194
Sau3AI	GATC	4 cut(s)	681, 714, 742, 1048
Sau96I	GGNCC	5 cut(s)	416, 472, 587, 628, 794
SchI	GAGTC	2 cut(s)	1069, 1137
ScrFI	CCNGG	2 cut(s)	1099, 1125
SduI	GDGCHC	1 cut(s)	934
SfaNI	GCATC	2 cut(s)	115, 1161
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	472, 628
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	704, 820, 1164
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	280, 332, 526, 647, 832, 967, 1213
SsiI	CCGC	5 cut(s)	5, 221, 270, 490, 881
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	1097, 1123
StyI	CCWWGG	4 cut(s)	82, 710, 955, 1043
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	19, 255, 336, 1026
TasI	AATT	7 cut(s)	280, 332, 526, 647, 832, 967, 1213
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	3 cut(s)	124, 286, 480
Tru1I	TTAA	3 cut(s)	278, 753, 1234
Tru9I	TTAA	3 cut(s)	278, 753, 1234
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	4 cut(s)	165, 860, 1061, 1201
TseI	GCWGC	3 cut(s)	56, 674, 1193
Tsp45I	GTSAC	4 cut(s)	165, 860, 1061, 1201
TspDTI	ATGAA	7 cut(s)	302, 358, 399, 412, 536, 1044, 1148
TspGWI	ACGGA	4 cut(s)	405, 459, 892, 942
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	472, 628
VspI	ATTAAT	1 cut(s)	753
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	280, 967
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.