Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Reverse (-)

12099596 .. 12102686

Gene Structure 3091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCAGGAGGGAAAGCTTGATGATTTGATCAGCAGCTTACCATTTGAAATACAGAAAAGAGTTGTTTCCTTGCTGCCATTGAAGGAAGCAGTGAGAACAAGCACTCTTTCTACATTTTGGAGAAGCTTCTGGTTTCCAATTCAGCTAAGCTTGGATTTTGATCCAAACCCATTAACCAATGAAGGGCCTGGTCAAGAAATCGAACAGGTTATGGGCATGTTCTTGAGGTCTTATGCATGTCCAGAAAAATTGGAGCTCAATCTCAAAGTCCTTGGCCATATCAATAAAGAATTGGTTGTCAAAGCTACCAAGGGGGGTGAGCAAGAGCTTCATGTTGAGTTCTTTGAAACTCAGAATGTTGCAGCAAAAACCTGTTTGTGCCTTCATAGCAATCCAGCCCAAAAATCTAGTTTCTTCGGGGTCAAGCTTCTTCACCTCAGATCAGTCACCCATCTTTCCAAACCTTTGGTTTCTATGCTGCTTTCAAATTGTAATGTTCTTGAAAGCTTGAGGCTTGTTAAATGTAGAGAGTTGGAGAGCCTTGAAGTAGAGACAGAGAGTCTTCAGAGCTTGGTGGTGGAAGACTGTTCAGATATTTCTGCTATTGTGGTTTCTGCTCCAAATCTAATATCTTTTGAGTATCATGGCGCTCTTGCTCAGATTGAGATAAAGAATACAGTGAGCTTGGTTGATGTTGTGCTCGATTTGAGAGATGGACCAGGAAGCAATGAGTTTGATTGTGAGGATGTCTTGCCCATCCTAGCTTCTCTCAAGGATGTTGAGGTTCTCACCGTATGTGGCTGGCTTCTTGAGTGGTTGTGTTCGGCGGGAGTGATATTTGAGCGGCTTGAGTTCAAGTTCAACAAACTAAAGGAGTTGAGTTGCATTGATTCTGTTATCAGTAAGGACAAAAGGGATTCTCTTGCCTGCTTCCTAAACTCATGTCCTTCCTTGATGAAGTTGTCCGTCGAGATTGAGAGCAAGTTGAACTTCATCCCCAGTCCGTGCTTCCATCAATACTGGCATGAACCTCACCTCTGGATGGACTTCACGACTGTAAAGACAAATACTTCGAATCTTGAACAGCTCAAAAGTGTCGACTTGGTTGGCTTCGTCGGCAAAGAAGACGAATTGCTACTAATGGATCTCTTACTTGAGAAGGCAATTAATCTCAACTCGTTGACTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

397

Amino Acids

44.66

Weight (kDa)

4.95

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	117 - 215	2e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	141 - 396	8.2e-17	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	1098
AciI	CCGC	2 cut(s)	827, 844
AclWI	GGATC	2 cut(s)	155, 1152
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	183, 1042
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	187, 718
Alw21I	GWGCWC	2 cut(s)	258, 702
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	155, 1152
AoxI	GGCC	2 cut(s)	185, 274
ApeKI	GCWGC	4 cut(s)	33, 73, 362, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	1054, 1086
AseI	ATTAAT	1 cut(s)	1167
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	185, 716
AsuHPI	GGTGA	5 cut(s)	329, 425, 439, 781, 1025
AsuII	TTCGAA	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	3 cut(s)	554, 588, 1131
Bbv12I	GWGCWC	2 cut(s)	258, 702
BbvI	GCAGC	4 cut(s)	45, 60, 374, 465
BccI	CCATC	5 cut(s)	459, 707, 764, 1020, 1036
BciT130I	CCWGG	2 cut(s)	189, 720
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	408, 761
BfoI	RGCGCY	1 cut(s)	651
BisI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
Bme1390I	CCNGG	2 cut(s)	189, 720
Bme18I	GGWCC	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	2 cut(s)	185, 716
BmrFI	CCNGG	2 cut(s)	189, 720
BmrI	ACTGGG	1 cut(s)	993
BmuI	ACTGGG	1 cut(s)	993
BpiI	GAAGAC	3 cut(s)	554, 588, 1131
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	6 cut(s)	244, 529, 755, 830, 869, 1175
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	271, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 1042
Bse1I	ACTGG	2 cut(s)	999, 1025
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	189, 720
BseDI	CCNNGG	2 cut(s)	271, 309
BseGI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	183, 1042
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	365, 451, 671
BseNI	ACTGG	2 cut(s)	999, 1025
BseXI	GCAGC	4 cut(s)	45, 60, 374, 465
BshFI	GGCC	2 cut(s)	187, 276
BsiHKAI	GWGCWC	2 cut(s)	258, 702
BslI	CCNNNNNNNGG	2 cut(s)	183, 1042
BsmAI	GTCTC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	187, 276
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	2 cut(s)	258, 702
Bsp143I	GATC	4 cut(s)	27, 160, 440, 1144
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	827, 844
BspANI	GGCC	2 cut(s)	187, 276
BspCNI	CTCAG	3 cut(s)	364, 450, 670
BspPI	GGATC	2 cut(s)	155, 1152
BspT104I	TTCGAA	1 cut(s)	1073
BsrBI	CCGCTC	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	999, 1025
BssECI	CCNNGG	2 cut(s)	271, 309
BssMI	GATC	4 cut(s)	27, 160, 440, 1144
BssT1I	CCWWGG	2 cut(s)	271, 309
Bst2UI	CCWGG	2 cut(s)	189, 720
Bst4CI	ACNGT	4 cut(s)	587, 679, 793, 1057
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	2 cut(s)	803, 928
BstDEI	CTNAG	4 cut(s)	146, 351, 437, 657
BstF5I	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	4 cut(s)	30, 163, 443, 1147
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	27, 160, 440, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 1116
BstNI	CCWGG	2 cut(s)	189, 720
BstNSI	RCATGY	2 cut(s)	220, 240
BstSCI	CCNGG	2 cut(s)	187, 718
BstV1I	GCAGC	4 cut(s)	45, 60, 374, 465
BstV2I	GAAGAC	3 cut(s)	554, 588, 1131
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	1144
BsuRI	GGCC	2 cut(s)	187, 276
BtsCI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 684
Cac8I	GCNNGC	2 cut(s)	803, 928
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	185, 716
CviAII	CATG	6 cut(s)	217, 237, 332, 644, 942, 1025
DdeI	CTNAG	4 cut(s)	146, 351, 437, 657
DpnI	GATC	4 cut(s)	29, 162, 442, 1146
DpnII	GATC	4 cut(s)	27, 160, 440, 1144
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	271, 309
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	187, 718
EcoT14I	CCWWGG	2 cut(s)	271, 309
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	271, 309
FaeI	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FatI	CATG	6 cut(s)	216, 236, 331, 643, 941, 1024
FauI	CCCGC	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FokI	GGATG	5 cut(s)	743, 758, 788, 980, 1054
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FspBI	CTAG	2 cut(s)	408, 761
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	187, 276
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	2 cut(s)	1099, 1182
HindII	GTYRAC	2 cut(s)	1099, 1182
HindIII	AAGCTT	5 cut(s)	14, 124, 148, 425, 505
HinfI	GANTC	5 cut(s)	559, 890, 917, 1075, 1183
HphI	GGTGA	5 cut(s)	329, 425, 439, 781, 1025
Hpy166II	GTNNAC	2 cut(s)	1099, 1182
Hpy188I	TCNGA	5 cut(s)	354, 440, 567, 592, 660
Hpy188III	TCNNGA	9 cut(s)	194, 223, 242, 500, 809, 970, 1039, 1051, 1079
Hpy8I	GTNNAC	2 cut(s)	1099, 1182
Hpy99I	CGWCG	2 cut(s)	971, 1118
HpyAV	CCTTC	5 cut(s)	76, 176, 392, 957, 1153
HpyCH4III	ACNGT	4 cut(s)	587, 679, 793, 1057
HpyCH4V	TGCA	4 cut(s)	4, 236, 362, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 1116
HpyF3I	CTNAG	4 cut(s)	146, 351, 437, 657
Hsp92II	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
HspAI	GCGC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 160, 440, 1144
LmnI	GCTCC	2 cut(s)	253, 622
Lsp1109I	GCAGC	4 cut(s)	45, 60, 374, 465
MaeI	CTAG	2 cut(s)	408, 761
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	4 cut(s)	29, 162, 442, 1146
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	4 cut(s)	27, 160, 440, 1144
MboII	GAAGA	5 cut(s)	406, 422, 554, 593, 1136
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	2 cut(s)	258, 702
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	568, 1177
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	219, 446, 504, 736, 775, 1041, 1046
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	3 cut(s)	173, 519, 1167
Msp20I	TGGCCA	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	189, 720
MvaI	CCWGG	2 cut(s)	189, 720
MwoI	GCNNNNNNNGC	2 cut(s)	387, 1116
NdeII	GATC	4 cut(s)	27, 160, 440, 1144
NlaIII	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	2 cut(s)	220, 240
NspV	TTCGAA	1 cut(s)	1073
PfeI	GAWTC	3 cut(s)	890, 917, 1075
PkrI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
PleI	GAGTC	2 cut(s)	567, 1177
PpsI	GAGTC	2 cut(s)	567, 1177
PshBI	ATTAAT	1 cut(s)	1167
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	187, 718
PspGI	CCWGG	2 cut(s)	187, 718
PspPI	GGNCC	2 cut(s)	185, 716
PsuI	RGATCY	1 cut(s)	1144
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	1097
SaqAI	TTAA	3 cut(s)	173, 519, 1167
SatI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
Sau3AI	GATC	4 cut(s)	27, 160, 440, 1144
Sau96I	GGNCC	2 cut(s)	185, 716
SchI	GAGTC	2 cut(s)	568, 1177
ScrFI	CCNGG	2 cut(s)	189, 720
SduI	GDGCHC	2 cut(s)	258, 702
SfuI	TTCGAA	1 cut(s)	1073
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
SmoI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
Sse9I	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
SsiI	CCGC	2 cut(s)	827, 844
SspMI	CTAG	2 cut(s)	408, 761
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	187, 718
StyI	CCWWGG	2 cut(s)	271, 309
TaaI	ACNGT	4 cut(s)	587, 679, 793, 1057
TaqI	TCGA	5 cut(s)	201, 702, 969, 1073, 1098
TasI	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	3 cut(s)	890, 917, 1075
Tru1I	TTAA	3 cut(s)	173, 519, 1167
Tru9I	TTAA	3 cut(s)	173, 519, 1167
TscAI	CASTG	2 cut(s)	96, 684
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	33, 73, 362, 478
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	195, 320, 374, 971, 982, 1041
TspGWI	ACGGA	2 cut(s)	955, 993
TspRI	CASTG	2 cut(s)	96, 684
VpaK11BI	GGWCC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	1167
XceI	RCATGY	2 cut(s)	220, 240
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	408, 761
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.