Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Forward (+)

2037093 .. 2042884

Gene Structure 5792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGGAGCAATATGTGAACAAGATAATGAAGATGATGAAGGATGAAAAGCTATTTTCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTGAGAATGAGTACAATCAAATCCAACTTGCATATAGAGAGTTGGGAGATACATATGTGCAGTGGGCAGCAAAGCTGGCAGTTGGGCAGAATATTGGAGTGCCATGGATCATGTGCAAGCAAAAGGATGCTCCTGATCCAGTGATTAATACTTGCAACGGAAGGCATTGTGGAGATACTTTTTCAGGACCTAACAAACCCAACAAGCCTGCTTTATGGACTGAGAATTGGACAGCTCAGTACCGAGTATTTGGTGACCCTCCTTCACAAAGAGCAGCAGAAGACATTGCATTTTCAGTTGCTCGGTTTTTCTCCAAGGGTGGGGCTCTAACCAACTACTATATGTACCATGGTGGAACGAATTTTGGAAGAACAAGTGCTGTTTTCACAACAACTCGTTACTACGATGAGGCTCCTCTCGATGAATATGCTTTGCAAAGGGACCCGAAATGGAGTCACCTCAAGGACTTGCACAAGGCTATAAATCTATGCAAGAAAACTTTGCTTACTGGAACTCCCGGAGACCAAAGGTTGGGGGAAGAAACTGAGGTTCGTTTCTATGAGAAGCCAGGGACAGAGTGTGCTGCTTTCATAGCAAATAATCACTCGACCATGGAAGCAACCGTTAATTGGAGGGGACAGAAGTTTCTCCTGCCACCAGCTTCCATTAGCATCCTCCCCGACTGCAAGACTGTGGTCTTCAATACTCAACAAATTGTATCCCAACATAATTCAAGGAACTTTGTTACAGCTAGTAAAAAAATGAACTGGGAAATGTCTCCCGAACCCATTGCAACCGTCGCGCAAATCCCATCCAATAGTAGGGAAATGCAGGAGCTCTATGTCTTGCTAAAAGATACCACAGACTATGCATGGTACACAACTAGCATTGACCTAAGTCCGTATGACTTGCCGATGAAGGATACTATCAGGCCAGTTGTACGAATTCCTAGTCTTGGTCATGCAATGGCTGTATTTGTCAATGATGAATATATTGGATCGCAACACGGTAGCCACGCAGAGAAAGGTTTCGTGTTCGAGGCACCTGCTAAAATGAAGCTAGGGGCGAACCATATCTCTCTGCTTTGCATGGTAGTGGGACTCCCAGATAGTGGAGCGTACATGGAGCACAGGTATGCAGGGCCTCGTTCTGTAACAATCCTAGGATTGAACACCGGAACAATCGACCTGTCCGCAAATGGCTGGGGACATAGGGCTGGCCTGAATGGTGAAAAGCTCGAAGTGTACACTGAGAAGGGAGCTCAGAAAGTGAAATGGACTAAGGCAACAGGTAAAGGAAGGGCTCTCACATGGTACAAGACAAGTTTTGATGCTCCTTCAGGAAGAGACCCTTGTGCTATTCGAATGACCGGTATGGGCAAGGGAATGGTATGGGTGAATGGTATAAGCATCGGCCGTCATTGGATGTCCTTCCTCTCTCCTCTTGGACAACCTACTCAAATCGAGTACCACATCCCAAGAGCCTTCATTAAGCCTAAGAATTTCCTTGTTGTATTGGAGGAGGAGCCAGCAGACCCAAAAGACATTGAGATCGTAACAGTCAACAGAGACACCATCTGCAGCCTTATTAAACAGGACTATCCGGGACATGTTAAGTACTGGGATAGAAAAGGCGGCAAGCTCACAACAGCTCCTGGAAAAAGTCTCCAACCATCAGCTCTCCTCAACTGTCCAAACTACAAAAAGATCAGTGCTATTGAATTCGCGGGCTATGGCAATCCTGACGGCTTCTGTGGAGCCTTTAAATTGGGACAATGCAATGCTCCTGAAGCCAAGAAGGTCGTCGAAGATCATTGCTTGGGAAAGATTTCATGTACAGTCCCAAATGACCCCAGCCTCTTCTTCAAGTCTGGTGATCCTTGCCCTGGTATCAAGAAGACACTAGCTATCCAAGCAGCGTGCAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

672

Amino Acids

74.63

Weight (kDa)

8.64

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	1 - 189	8.7e-53	Glycosyl hydrolases family 35
GHD	PF17834	213 - 268	3.1e-20	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	465 - 529	2.5e-22	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	591 - 670	2.5e-17	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1141
Acc36I	ACCTGC	1 cut(s)	1141
AccB1I	GGYRCC	1 cut(s)	1129
AccB7I	CCANNNNNTGG	2 cut(s)	619, 1199
AccII	CGCG	2 cut(s)	890, 1814
AciI	CCGC	3 cut(s)	1281, 1722, 1814
AclWI	GGATC	4 cut(s)	203, 218, 1093, 1958
AcoI	YGGCCR	1 cut(s)	1501
AcsI	RAATTY	4 cut(s)	448, 1032, 1588, 1808
AcuI	CTGAAG	2 cut(s)	1410, 1896
AfiI	CCNNNNNNNGG	8 cut(s)	65, 408, 619, 717, 909, 1043, 1199, 1973
AflIII	ACRYGT	1 cut(s)	1696
AgeI	ACCGGT	1 cut(s)	1457
AgsI	TTSAA	5 cut(s)	790, 822, 1258, 1808, 1954
AjnI	CCWGG	3 cut(s)	655, 1741, 1972
Alw21I	GWGCWC	3 cut(s)	927, 1218, 1351
Alw26I	GTCTC	5 cut(s)	603, 870, 1428, 1650, 1757
AlwI	GGATC	4 cut(s)	203, 218, 1093, 1958
AlwNI	CAGNNNCTG	1 cut(s)	1742
AoxI	GGCC	4 cut(s)	1019, 1229, 1306, 1501
ApeKI	GCWGC	6 cut(s)	155, 362, 671, 1668, 2003, 2010
ApoI	RAATTY	4 cut(s)	448, 1032, 1588, 1808
ArsI	GACNNNNNNTTYG	2 cut(s)	1024, 1056
AseI	ATTAAT	1 cut(s)	234
AsiGI	ACCGGT	1 cut(s)	1457
Asp700I	GAANNNNTTC	2 cut(s)	1115, 1915
AspA2I	CCTAGG	1 cut(s)	1249
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	4 cut(s)	68, 275, 529, 1229
AsuC2I	CCSGG	2 cut(s)	606, 1692
AsuHPI	GGTGA	5 cut(s)	353, 536, 1328, 1495, 1973
AsuII	TTCGAA	1 cut(s)	1450
AvaII	GGWCC	3 cut(s)	68, 275, 529
AvrII	CCTAGG	1 cut(s)	1249
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BanI	GGYRCC	1 cut(s)	1129
BanII	GRGCYC	4 cut(s)	415, 927, 1351, 1393
BbsI	GAAGAC	3 cut(s)	375, 778, 1991
Bbv12I	GWGCWC	3 cut(s)	927, 1218, 1351
BbvI	GCAGC	5 cut(s)	167, 374, 658, 1680, 2015
BccI	CCATC	3 cut(s)	907, 1670, 1768
BceAI	ACGGC	2 cut(s)	1488, 1849
BcgI	CGANNNNNNTGC	6 cut(s)	497, 531, 860, 894, 1115, 1149
BciT130I	CCWGG	3 cut(s)	657, 1743, 1974
BciVI	GTATCC	2 cut(s)	817, 1003
BcnI	CCSGG	2 cut(s)	606, 1692
BcoDI	GTCTC	5 cut(s)	603, 870, 1428, 1650, 1757
BfaI	CTAG	6 cut(s)	840, 972, 1038, 1148, 1250, 1991
BfmI	CTRYAG	1 cut(s)	1666
BfuAI	ACCTGC	1 cut(s)	1141
BfuI	GTATCC	2 cut(s)	817, 1003
BisI	GCNGC	7 cut(s)	156, 363, 672, 1669, 1723, 2004, 2011
BlnI	CCTAGG	1 cut(s)	1249
BlsI	GCNGC	7 cut(s)	157, 364, 673, 1670, 1724, 2005, 2012
BmcAI	AGTACT	1 cut(s)	1706
Bme1390I	CCNGG	5 cut(s)	606, 657, 1692, 1743, 1974
Bme18I	GGWCC	3 cut(s)	68, 275, 529
BmgT120I	GGNCC	4 cut(s)	68, 275, 529, 1229
BmiI	GGNNCC	6 cut(s)	501, 530, 531, 1131, 1614, 1846
BmrFI	CCNGG	5 cut(s)	606, 657, 1692, 1743, 1974
BmrI	ACTGGG	2 cut(s)	865, 1717
BmsI	GCATC	4 cut(s)	205, 768, 1408, 1506
BmuI	ACTGGG	2 cut(s)	865, 1717
BoxI	GACNNNNGTC	2 cut(s)	782, 984
BpiI	GAAGAC	3 cut(s)	375, 778, 1991
Bpu14I	TTCGAA	1 cut(s)	1450
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	606, 1692
BsaI	GGTCTC	2 cut(s)	603, 1428
BsaJI	CCNNGG	7 cut(s)	191, 402, 436, 656, 699, 1249, 1972
BsaWI	WCCGGW	2 cut(s)	1262, 1457
BsaXI	ACNNNNNCTCC	6 cut(s)	586, 616, 1205, 1235, 1723, 1753
Bsc4I	CCNNNNNNNGG	8 cut(s)	65, 408, 619, 717, 909, 1043, 1199, 1973
Bse118I	RCCGGY	1 cut(s)	1457
Bse1I	ACTGG	5 cut(s)	227, 601, 860, 1022, 1712
Bse3DI	GCAATG	5 cut(s)	372, 876, 1059, 1873, 1900
BseBI	CCWGG	3 cut(s)	657, 1743, 1974
BseDI	CCNNGG	7 cut(s)	191, 402, 436, 656, 699, 1249, 1972
BseGI	GGATG	6 cut(s)	46, 220, 759, 899, 1518, 1560
BseLI	CCNNNNNNNGG	8 cut(s)	65, 408, 619, 717, 909, 1043, 1199, 1973
BseMI	GCAATG	5 cut(s)	372, 876, 1059, 1873, 1900
BseMII	CTCAG	6 cut(s)	98, 300, 338, 624, 1329, 1364
BseNI	ACTGG	5 cut(s)	227, 601, 860, 1022, 1712
BseRI	GAGGAG	5 cut(s)	492, 1518, 1622, 1625, 1760
BseX3I	CGGCCG	1 cut(s)	1501
BseXI	GCAGC	5 cut(s)	167, 374, 658, 1680, 2015
BseYI	CCCAGC	2 cut(s)	1290, 1940
BsgI	GTGCAG	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	890, 1814
Bsh1285I	CGRYCG	1 cut(s)	1504
BshFI	GGCC	4 cut(s)	1021, 1231, 1308, 1503
BshNI	GGYRCC	1 cut(s)	1129
BshTI	ACCGGT	1 cut(s)	1457
BsiEI	CGRYCG	1 cut(s)	1504
BsiHKAI	GWGCWC	3 cut(s)	927, 1218, 1351
BsiSI	CCGG	4 cut(s)	606, 1263, 1458, 1691
BslFI	GGGAC	8 cut(s)	542, 673, 738, 1200, 1308, 1707, 1872, 1913
BslI	CCNNNNNNNGG	8 cut(s)	65, 408, 619, 717, 909, 1043, 1199, 1973
BsmAI	GTCTC	5 cut(s)	603, 870, 1428, 1650, 1757
BsmFI	GGGAC	8 cut(s)	542, 673, 738, 1200, 1308, 1707, 1872, 1913
BsnI	GGCC	4 cut(s)	1021, 1231, 1308, 1503
Bso31I	GGTCTC	2 cut(s)	603, 1428
Bsp119I	TTCGAA	1 cut(s)	1450
Bsp1286I	GDGCHC	5 cut(s)	415, 927, 1218, 1351, 1393
Bsp1407I	TGTACA	2 cut(s)	1332, 1922
Bsp143I	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
Bsp19I	CCATGG	3 cut(s)	191, 436, 699
BspACI	CCGC	3 cut(s)	1281, 1722, 1814
BspANI	GGCC	4 cut(s)	1021, 1231, 1308, 1503
BspCNI	CTCAG	6 cut(s)	97, 301, 337, 625, 1330, 1363
BspFNI	CGCG	2 cut(s)	890, 1814
BspLI	GGNNCC	6 cut(s)	501, 530, 531, 1131, 1614, 1846
BspMAI	CTGCAG	1 cut(s)	1670
BspMI	ACCTGC	1 cut(s)	1141
BspPI	GGATC	4 cut(s)	203, 218, 1093, 1958
BspT104I	TTCGAA	1 cut(s)	1450
BspT107I	GGYRCC	1 cut(s)	1129
BspTNI	GGTCTC	2 cut(s)	603, 1428
BsrDI	GCAATG	5 cut(s)	372, 876, 1059, 1873, 1900
BsrFI	RCCGGY	1 cut(s)	1457
BsrGI	TGTACA	2 cut(s)	1332, 1922
BsrI	ACTGG	5 cut(s)	227, 601, 860, 1022, 1712
BssAI	RCCGGY	1 cut(s)	1457
BssECI	CCNNGG	7 cut(s)	191, 402, 436, 656, 699, 1249, 1972
BssMI	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
BssT1I	CCWWGG	5 cut(s)	191, 402, 436, 699, 1249
Bst2UI	CCWGG	3 cut(s)	657, 1743, 1974
Bst4CI	ACNGT	7 cut(s)	712, 781, 886, 1097, 1648, 1778, 1927
Bst6I	CTCTTC	2 cut(s)	1426, 1952
BstAUI	TGTACA	2 cut(s)	1332, 1922
BstBI	TTCGAA	1 cut(s)	1450
BstC8I	GCNNGC	8 cut(s)	165, 206, 297, 1306, 1617, 1727, 1816, 2008
BstDSI	CCRYGG	3 cut(s)	191, 436, 699
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	6 cut(s)	46, 220, 759, 899, 1518, 1560
BstFNI	CGCG	2 cut(s)	890, 1814
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	7 cut(s)	198, 226, 1088, 1641, 1797, 1900, 1966
BstMAI	GTCTC	5 cut(s)	603, 870, 1428, 1650, 1757
BstMBI	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
BstMCI	CGRYCG	1 cut(s)	1504
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 680, 887, 1877, 2000
BstNI	CCWGG	3 cut(s)	657, 1743, 1974
BstNSI	RCATGY	1 cut(s)	1700
BstPAI	GACNNNNGTC	2 cut(s)	782, 984
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	5 cut(s)	604, 655, 1690, 1741, 1972
BstSFI	CTRYAG	1 cut(s)	1666
BstUI	CGCG	2 cut(s)	890, 1814
BstV1I	GCAGC	5 cut(s)	167, 374, 658, 1680, 2015
BstV2I	GAAGAC	3 cut(s)	375, 778, 1991
BstZI	CGGCCG	1 cut(s)	1501
BsuI	GTATCC	2 cut(s)	817, 1003
BsuRI	GGCC	4 cut(s)	1021, 1231, 1308, 1503
BtgI	CCRYGG	3 cut(s)	191, 436, 699
BtsCI	GGATG	6 cut(s)	46, 220, 759, 899, 1518, 1560
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	4 cut(s)	155, 234, 1335, 1804
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	8 cut(s)	165, 206, 297, 1306, 1617, 1727, 1816, 2008
CaiI	CAGNNNCTG	1 cut(s)	1742
CfoI	GCGC	1 cut(s)	892
Cfr10I	RCCGGY	1 cut(s)	1457
Cfr13I	GGNCC	4 cut(s)	68, 275, 529, 1229
CspAI	ACCGGT	1 cut(s)	1457
DpnI	GATC	7 cut(s)	197, 225, 1087, 1640, 1796, 1899, 1965
DpnII	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
DraI	TTTAAA	1 cut(s)	1852
EaeI	YGGCCR	1 cut(s)	1501
EagI	CGGCCG	1 cut(s)	1501
Eam1104I	CTCTTC	2 cut(s)	1426, 1952
EarI	CTCTTC	2 cut(s)	1426, 1952
Ecl136II	GAGCTC	2 cut(s)	925, 1349
EclXI	CGGCCG	1 cut(s)	1501
Eco130I	CCWWGG	5 cut(s)	191, 402, 436, 699, 1249
Eco24I	GRGCYC	4 cut(s)	415, 927, 1351, 1393
Eco31I	GGTCTC	2 cut(s)	603, 1428
Eco47I	GGWCC	3 cut(s)	68, 275, 529
Eco52I	CGGCCG	1 cut(s)	1501
Eco53kI	GAGCTC	2 cut(s)	925, 1349
Eco57I	CTGAAG	2 cut(s)	1410, 1896
Eco91I	GGTNACC	1 cut(s)	341
EcoICRI	GAGCTC	2 cut(s)	925, 1349
EcoO109I	RGGNCCY	3 cut(s)	275, 529, 1229
EcoO65I	GGTNACC	1 cut(s)	341
EcoRI	GAATTC	2 cut(s)	1032, 1808
EcoRII	CCWGG	3 cut(s)	655, 1741, 1972
EcoT14I	CCWWGG	5 cut(s)	191, 402, 436, 699, 1249
EcoT22I	ATGCAT	1 cut(s)	961
EcoT38I	GRGCYC	4 cut(s)	415, 927, 1351, 1393
ErhI	CCWWGG	5 cut(s)	191, 402, 436, 699, 1249
FalI	AAGNNNNNCTT	2 cut(s)	1423, 1455
FaqI	GGGAC	8 cut(s)	542, 673, 738, 1200, 1308, 1707, 1872, 1913
FauI	CCCGC	1 cut(s)	1807
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	7 cut(s)	156, 363, 672, 1669, 1723, 2004, 2011
FokI	GGATG	6 cut(s)	53, 227, 746, 886, 1525, 1547
FriOI	GRGCYC	4 cut(s)	415, 927, 1351, 1393
Fsp4HI	GCNGC	7 cut(s)	156, 363, 672, 1669, 1723, 2004, 2011
FspBI	CTAG	6 cut(s)	840, 972, 1038, 1148, 1250, 1991
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	7 cut(s)	156, 363, 672, 1669, 1723, 2004, 2011
GsaI	CCCAGC	2 cut(s)	1294, 1944
HaeIII	GGCC	4 cut(s)	1021, 1231, 1308, 1503
HapII	CCGG	4 cut(s)	606, 1263, 1458, 1691
HhaI	GCGC	1 cut(s)	892
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HincII	GTYRAC	1 cut(s)	1651
HindII	GTYRAC	1 cut(s)	1651
HinfI	GANTC	2 cut(s)	541, 1188
HpaII	CCGG	4 cut(s)	606, 1263, 1458, 1691
HphI	GGTGA	5 cut(s)	353, 536, 1328, 1495, 1973
Hpy166II	GTNNAC	5 cut(s)	16, 966, 1333, 1335, 1651
Hpy188I	TCNGA	2 cut(s)	87, 1353
Hpy188III	TCNNGA	8 cut(s)	221, 273, 506, 869, 1428, 1829, 1874, 1981
Hpy8I	GTNNAC	5 cut(s)	16, 966, 1333, 1335, 1651
Hpy99I	CGWCG	2 cut(s)	890, 1895
HpyCH4III	ACNGT	7 cut(s)	712, 781, 886, 1097, 1648, 1778, 1927
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 680, 887, 1877, 2000
HspAI	GCGC	1 cut(s)	890
KflI	GGGWCCC	1 cut(s)	529
Kzo9I	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
Lsp1109I	GCAGC	5 cut(s)	167, 374, 658, 1680, 2015
LweI	GCATC	4 cut(s)	205, 768, 1408, 1506
MaeI	CTAG	6 cut(s)	840, 972, 1038, 1148, 1250, 1991
MaeIII	GTNAC	6 cut(s)	341, 485, 542, 832, 1240, 1642
MalI	GATC	7 cut(s)	197, 225, 1087, 1640, 1796, 1899, 1965
MboI	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
MhlI	GDGCHC	5 cut(s)	415, 927, 1218, 1351, 1393
MluCI	AATT	9 cut(s)	313, 448, 715, 801, 817, 1032, 1588, 1808, 1853
MlyI	GAGTC	2 cut(s)	550, 1182
MmeI	TCCRAC	2 cut(s)	136, 1780
Mph1103I	ATGCAT	1 cut(s)	961
MroXI	GAANNNNTTC	2 cut(s)	1115, 1915
MseI	TTAA	7 cut(s)	234, 714, 1578, 1677, 1701, 1851, 2017
MslI	CAYNNNNRTG	2 cut(s)	1181, 1221
MspI	CCGG	4 cut(s)	606, 1263, 1458, 1691
MspR9I	CCNGG	5 cut(s)	606, 657, 1692, 1743, 1974
MvaI	CCWGG	3 cut(s)	657, 1743, 1974
MvnI	CGCG	2 cut(s)	890, 1814
MwoI	GCNNNNNNNGC	5 cut(s)	164, 680, 887, 1877, 2000
NciI	CCSGG	2 cut(s)	606, 1692
NcoI	CCATGG	3 cut(s)	191, 436, 699
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
NlaIV	GGNNCC	6 cut(s)	501, 530, 531, 1131, 1614, 1846
NmuCI	GTSAC	2 cut(s)	341, 542
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	1 cut(s)	1700
NspV	TTCGAA	1 cut(s)	1450
PaqCI	CACCTGC	1 cut(s)	1141
PciI	ACATGT	1 cut(s)	1696
PdmI	GAANNNNTTC	2 cut(s)	1115, 1915
PflMI	CCANNNNNTGG	2 cut(s)	619, 1199
PfoI	TCCNGGA	3 cut(s)	604, 1690, 1741
PinAI	ACCGGT	1 cut(s)	1457
PkrI	GCNGC	7 cut(s)	157, 364, 673, 1670, 1724, 2005, 2012
PleI	GAGTC	2 cut(s)	549, 1182
PpsI	GAGTC	2 cut(s)	549, 1182
PpuMI	RGGWCCY	2 cut(s)	275, 529
PscI	ACATGT	1 cut(s)	1696
PshAI	GACNNNNGTC	2 cut(s)	782, 984
PshBI	ATTAAT	1 cut(s)	234
Psp124BI	GAGCTC	2 cut(s)	927, 1351
Psp5II	RGGWCCY	2 cut(s)	275, 529
Psp6I	CCWGG	3 cut(s)	655, 1741, 1972
PspEI	GGTNACC	1 cut(s)	341
PspFI	CCCAGC	2 cut(s)	1290, 1940
PspGI	CCWGG	3 cut(s)	655, 1741, 1972
PspN4I	GGNNCC	6 cut(s)	501, 530, 531, 1131, 1614, 1846
PspPI	GGNCC	4 cut(s)	68, 275, 529, 1229
PspPPI	RGGWCCY	2 cut(s)	275, 529
PstI	CTGCAG	1 cut(s)	1670
PstNI	CAGNNNCTG	1 cut(s)	1742
RseI	CAYNNNNRTG	2 cut(s)	1181, 1221
SacI	GAGCTC	2 cut(s)	927, 1351
SaqAI	TTAA	7 cut(s)	234, 714, 1578, 1677, 1701, 1851, 2017
SatI	GCNGC	7 cut(s)	156, 363, 672, 1669, 1723, 2004, 2011
Sau3AI	GATC	7 cut(s)	195, 223, 1085, 1638, 1794, 1897, 1963
Sau96I	GGNCC	4 cut(s)	68, 275, 529, 1229
ScaI	AGTACT	1 cut(s)	1706
SchI	GAGTC	2 cut(s)	550, 1182
ScrFI	CCNGG	5 cut(s)	606, 657, 1692, 1743, 1974
SduI	GDGCHC	5 cut(s)	415, 927, 1218, 1351, 1393
SfaNI	GCATC	4 cut(s)	205, 768, 1408, 1506
SfcI	CTRYAG	1 cut(s)	1666
SfuI	TTCGAA	1 cut(s)	1450
SinI	GGWCC	3 cut(s)	68, 275, 529
SmiMI	CAYNNNNRTG	2 cut(s)	1181, 1221
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	9 cut(s)	313, 448, 715, 801, 817, 1032, 1588, 1808, 1853
SsiI	CCGC	3 cut(s)	1281, 1722, 1814
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	6 cut(s)	840, 972, 1038, 1148, 1250, 1991
SstI	GAGCTC	2 cut(s)	927, 1351
StyD4I	CCNGG	5 cut(s)	604, 655, 1690, 1741, 1972
StyI	CCWWGG	5 cut(s)	191, 402, 436, 699, 1249
TaaI	ACNGT	7 cut(s)	712, 781, 886, 1097, 1648, 1778, 1927
TaqI	TCGA	8 cut(s)	507, 695, 1125, 1272, 1326, 1450, 1551, 1893
TasI	AATT	9 cut(s)	313, 448, 715, 801, 817, 1032, 1588, 1808, 1853
TatI	WGTACW	4 cut(s)	99, 1332, 1704, 1922
TauI	GCSGC	1 cut(s)	1725
Tru1I	TTAA	7 cut(s)	234, 714, 1578, 1677, 1701, 1851, 2017
Tru9I	TTAA	7 cut(s)	234, 714, 1578, 1677, 1701, 1851, 2017
TscAI	CASTG	4 cut(s)	155, 234, 1342, 1804
TseFI	GTSAC	2 cut(s)	341, 542
TseI	GCWGC	6 cut(s)	155, 362, 671, 1668, 2003, 2010
Tsp45I	GTSAC	2 cut(s)	341, 542
TspGWI	ACGGA	2 cut(s)	261, 978
TspRI	CASTG	4 cut(s)	155, 234, 1342, 1804
Van91I	CCANNNNNTGG	2 cut(s)	619, 1199
VpaK11BI	GGWCC	3 cut(s)	68, 275, 529
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	4 cut(s)	448, 1032, 1588, 1808
XceI	RCATGY	1 cut(s)	1700
XmaJI	CCTAGG	1 cut(s)	1249
XmnI	GAANNNNTTC	2 cut(s)	1115, 1915
XspI	CTAG	6 cut(s)	840, 972, 1038, 1148, 1250, 1991
ZrmI	AGTACT	1 cut(s)	1706
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.