Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002763

Physical Location & Seq

Genomic Coordinates Forward (+)

68815888 .. 68817927

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0505200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTCCAAAGAATTTGTATCCTCATTAGTCAAGAAAGAGACACTTCTTCGTCTCCAACTCTCTCTCTCTCTGTCTCTGAAGCAAAGGCCATGGATCGCGCCCAGATCGTTTTTCTAGGGTTACCACTCTTCCTCTTCTGCTTCGATGTCCTTAACATCTTCACTCTCCGACCACCACCGCCTCCTCCTCACAAGGCACCCCACCACCACCACCACCACCACCTCCAAAACAAACCACCTCCACTCCCTAAAGACACCCTAGACTTCCCCTCACAGAAACCAATCGCTGGAGCAGTGGGGGTCGGCAACACAGTCAAGATTAGTTTCTGCACCTCTTGCTCTTACAAGGGGACTGCAGTAACAATGACCAAGATGCTAGAGGCTGCTTATCCTGGGATTGAAGTTGTTCTTTCAAACTATCCCCCAGCTTTACCAAAGCATCTGCTTAGCAAATTAGTTCCTGTTGTTCAATTTGGAATATTTGGGATTGTCATGGGGGGTGAGCAACTTTTCCCTATGGTGGGGATGGTACCCCCTCCTTGGTTTTACTCTCTGCGTGCGAATAGGTTTGGAACCATGGCATCTACTTGGCTTCTTGGTAATGCATTGCAGTCCTTCCTTCAAGGCACTGGCGCTTTTGAAGTTTCCCTCAACGATGAATTGATTTTCTCTAAGCTCCAGGAGGGAAGATTTCCAGGAGAGATTGAACTAAGAGATGCCATTGGCAGGAAGTTGGTCAATTCAGGAATCACTGGTGATGGGGCATTATGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

258

Amino Acids

28.23

Weight (kDa)

8.68

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rdx	PF10262	104 - 241	8.1e-18	Rdx family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16730 AT4G35010
fragaria_vesca	FvH4_2g01270 FvH4_4g13900
malus_domestica	MD04G1010100.v1.1 MD05G1121000.v1.1 MD10G1095200.v1.1 MD13G1284600.v1.1
prunus_persica	Prupe.1G009200_v2.0.a1 Prupe.1G009300_v2.0.a1 Prupe.8G164800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475241 RchiOBHm_Chr4g0415021 RchiOBHm_Chr6g0251931
rosa_laevigata	RLG00000008102 RLG00000015418 RLG00000023857
rosa_multiflora	Rmu_sc0003611.1_g000013 Rmu_sc0008157.1_g000007 Rmu_ssc0000303.1_g000015
rosa_roxburghii	Rroxscaffold_5G00358760 Rroxscaffold_6G00406440
rosa_rugosa	Rorug03G0147300 Rorug04G0131700 Rorug05G0505100 Rorug05G0505200 Rorug05G0505200
rosa_samantha	Rh3AG197300 Rh4AG191000 Rh4BG189100 Rh4CG202000 Rh4DG189500 Rh6AG016400 Rh6BG014400 Rh6CG011300 Rh6DG012600
rosa_wichuraiana	Rw3G017940 Rw4G016250 Rw6G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	2 cut(s)	196, 529
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	5 cut(s)	287, 520, 521, 540, 726
AgsI	TTSAA	6 cut(s)	401, 414, 470, 623, 641, 707
AjnI	CCWGG	3 cut(s)	391, 678, 694
AluBI	AGCT	2 cut(s)	428, 676
AluI	AGCT	2 cut(s)	428, 676
Alw26I	GTCTC	3 cut(s)	33, 57, 79
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	101, 635
AspS9I	GGNCC	2 cut(s)	4, 771
AsuHPI	GGTGA	2 cut(s)	512, 767
AvaII	GGWCC	2 cut(s)	4, 771
BanI	GGYRCC	2 cut(s)	196, 529
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	520, 752
BciT130I	CCWGG	3 cut(s)	393, 680, 696
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	3 cut(s)	33, 57, 79
BfaI	CTAG	4 cut(s)	116, 260, 377, 775
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	384
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	393, 680, 696
Bme18I	GGWCC	2 cut(s)	4, 771
BmgT120I	GGNCC	2 cut(s)	4, 771
BmiI	GGNNCC	3 cut(s)	198, 531, 574
BmrFI	CCNGG	3 cut(s)	393, 680, 696
BmsI	GCATC	4 cut(s)	363, 448, 590, 706
BpmI	CTGGAG	2 cut(s)	309, 662
Bpu1102I	GCTNAGC	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	90, 392, 539, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 520, 521, 540, 726
Bse1I	ACTGG	2 cut(s)	634, 757
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	3 cut(s)	393, 680, 696
BseDI	CCNNGG	4 cut(s)	90, 392, 539, 576
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	5 cut(s)	287, 520, 521, 540, 726
BseMI	GCAATG	1 cut(s)	605
BseNI	ACTGG	2 cut(s)	634, 757
BseRI	GAGGAG	2 cut(s)	174, 177
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	196, 529
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	5 cut(s)	287, 520, 521, 540, 726
BsmAI	GTCTC	3 cut(s)	33, 57, 79
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	94, 105
Bsp1720I	GCTNAGC	1 cut(s)	446
Bsp19I	CCATGG	2 cut(s)	90, 576
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	198, 531, 574
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	196, 529
BsrDI	GCAATG	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	634, 757
BssECI	CCNNGG	4 cut(s)	90, 392, 539, 576
BssMI	GATC	2 cut(s)	94, 105
BssT1I	CCWWGG	3 cut(s)	90, 539, 576
Bst2UI	CCWGG	3 cut(s)	393, 680, 696
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	134, 140
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	446, 672, 710
BstDSI	CCRYGG	2 cut(s)	90, 576
BstEII	GGTNACC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	2 cut(s)	101, 635
BstKTI	GATC	2 cut(s)	97, 108
BstMAI	GTCTC	3 cut(s)	33, 57, 79
BstMBI	GATC	2 cut(s)	94, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	3 cut(s)	393, 680, 696
BstPI	GGTNACC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	391, 678, 694
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	2 cut(s)	90, 576
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	300, 627, 750
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	2 cut(s)	101, 635
Cfr13I	GGNCC	2 cut(s)	4, 771
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	3 cut(s)	91, 493, 577
CviJI	RGCY	5 cut(s)	89, 383, 428, 592, 676
CviKI_1	RGCY	5 cut(s)	89, 383, 428, 592, 676
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	446, 672, 710
DpnI	GATC	2 cut(s)	96, 107
DpnII	GATC	2 cut(s)	94, 105
Eam1104I	CTCTTC	2 cut(s)	134, 140
EarI	CTCTTC	2 cut(s)	134, 140
Eco130I	CCWWGG	3 cut(s)	90, 539, 576
Eco47I	GGWCC	2 cut(s)	4, 771
Eco57I	CTGAAG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	120
EcoRII	CCWGG	3 cut(s)	391, 678, 694
EcoT14I	CCWWGG	3 cut(s)	90, 539, 576
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	3 cut(s)	90, 539, 576
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	3 cut(s)	94, 496, 580
FaiI	YATR	5 cut(s)	92, 494, 518, 578, 769
FalI	AAGNNNNNCTT	4 cut(s)	28, 60, 393, 425
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	90, 492, 576
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	4 cut(s)	116, 260, 377, 775
GlaI	GCGC	2 cut(s)	100, 634
GluI	GCNGC	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	2 cut(s)	309, 662
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	101, 635
Hin1II	CATG	3 cut(s)	94, 496, 580
Hin6I	GCGC	2 cut(s)	99, 633
HinP1I	GCGC	2 cut(s)	99, 633
HinfI	GANTC	1 cut(s)	747
HphI	GGTGA	2 cut(s)	512, 767
Hpy188I	TCNGA	2 cut(s)	79, 170
Hpy188III	TCNNGA	3 cut(s)	32, 316, 744
HpyAV	CCTTC	2 cut(s)	625, 629
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	330, 356, 605, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	3 cut(s)	446, 672, 710
Hsp92II	CATG	3 cut(s)	94, 496, 580
HspAI	GCGC	2 cut(s)	99, 633
KpnI	GGTACC	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	94, 105
LmnI	GCTCC	2 cut(s)	290, 681
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	4 cut(s)	363, 448, 590, 706
MaeI	CTAG	4 cut(s)	116, 260, 377, 775
MaeIII	GTNAC	2 cut(s)	120, 358
MalI	GATC	2 cut(s)	96, 107
MboI	GATC	2 cut(s)	94, 105
MboII	GAAGA	5 cut(s)	39, 121, 127, 151, 699
MluCI	AATT	5 cut(s)	12, 452, 470, 659, 739
MmeI	TCCRAC	2 cut(s)	80, 193
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	3 cut(s)	393, 680, 696
MvaI	CCWGG	3 cut(s)	393, 680, 696
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	336
NcoI	CCATGG	2 cut(s)	90, 576
NdeII	GATC	2 cut(s)	94, 105
NlaIII	CATG	3 cut(s)	94, 496, 580
NlaIV	GGNNCC	3 cut(s)	198, 531, 574
NsiI	ATGCAT	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	747
PflMI	CCANNNNNTGG	1 cut(s)	287
PfoI	TCCNGGA	2 cut(s)	678, 694
PkrI	GCNGC	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	391, 678, 694
PspEI	GGTNACC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	3 cut(s)	391, 678, 694
PspN4I	GGNNCC	3 cut(s)	198, 531, 574
PspPI	GGNCC	2 cut(s)	4, 771
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	94, 105
Sau96I	GGNCC	2 cut(s)	4, 771
ScrFI	CCNGG	3 cut(s)	393, 680, 696
SetI	ASST	7 cut(s)	225, 241, 335, 430, 569, 678, 776
SfaNI	GCATC	4 cut(s)	363, 448, 590, 706
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	4, 771
Sse9I	AATT	5 cut(s)	12, 452, 470, 659, 739
SsiI	CCGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	4 cut(s)	116, 260, 377, 775
StyD4I	CCNGG	3 cut(s)	391, 678, 694
StyI	CCWWGG	3 cut(s)	90, 539, 576
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	144
TasI	AATT	5 cut(s)	12, 452, 470, 659, 739
TfiI	GAWTC	1 cut(s)	747
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	3 cut(s)	300, 634, 757
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	672
TspRI	CASTG	3 cut(s)	300, 634, 757
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	4, 771
XapI	RAATTY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	4 cut(s)	116, 260, 377, 775
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.