Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Forward (+)

17170834 .. 17175244

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G164900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCAAATCGCCAAGACGACCTTGATCTCCTTCTCTCTCTTCAAGATAGGGTTTTGGAAACCCCTCCTGGTTCACCTTCCCATTCGGCAGGCTACTTATCGGACGATGAATTTACGGGCCAAAGAGGGCCGGTGGACATGTCCGTGTTCAGGGACGCCGTCGAGGACTGCCTTGATTACGAGCCTAAACCGGTTCAGAAGACTGGGAAATTGAACCGGCCCAGTGCCTCCACTGATCCAGAAGTTGAGAAATTTTCGGGTTTGCGAATCAGGAAGCAGTTGATAACTCCTTTAGAGCTTAATGATCACTTTTCAGACATCCGTTTTGTTCGGTTATACGCCATAAAGAATTTGCTGCGTGGGGATACTCTTTCAGGCTGTTGGGCAACTGTTGGAGTATTGACTGAGAAGGGGAATCCAAAAACTAGTTCCACAGGGAAGAGTTATTCTATATGGAAATTTGGGTGTTTGGATGAAGATACCATTTCTGTTTTCTTGTTTGGTGATGCTTATGAGATGAACTGCAAAGAGCAGGCTGGAATGGTGTTTGCGCTACTTAATTGCACCGTACGCAAGGATGCTATGGGTGGTGGTTTTTCTTTGAGTGTGTATTCAGCCAATCAAATGCTGAAGATGGGCACTTCAGTTGATTATGGAGTTTGCAAAGGGAAAAGAAAGGATGGAATGGCTTGTACTGTAGTCATAAACAAACGCCGTGGAATATATTGTAAATTTCATAAATCGAAAGAATCACAGAAATATTCCACGATGACAATGCGAACTGAGCTCAATGGAGGGAACTTGCGAACAGCATTTCGGACTCCTCACAGTAGAGAAGGGATTTTTATGGTTGATCCTCTATCTGACAGAACAAACGCGTGCAAGCGTAAGCAGCCAGTGAAGCTATTGTCAGTGGAAGGGCTCAAGAAGGCATTAAGCAATGCAGGTAAAGTGACTACAAATACACACTCACAAGGAATAAGGTTTTTGGCTGAGATGACAGGGAAGACAGATCCGAAACATGCGATTAAAACTTCAAAAATGCAAAGCAAACCGATCTCCAGTTTAGAGAAGAGGAAGCCATCTAGTATAATCATGGATCCATCTGCAGTCATAAAAAACCAGCAAATGGATTCAAAAAGAATGAAAACTGGGAAGGAGAAAATTTTGATAGACAAAACAAAGGAGGGCATGGGAAAGATGATTGAATTAGAGTATATAAGCTCGGATGAAGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

414

Amino Acids

45.97

Weight (kDa)

9.31

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	1129
AccII	CGCG	1 cut(s)	878
AclWI	GGATC	5 cut(s)	230, 848, 1007, 1094, 1107
AcsI	RAATTY	6 cut(s)	110, 251, 349, 458, 731, 1164
AcuI	CTGAAG	2 cut(s)	627, 650
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	570, 694
AfiI	CCNNNNNNNGG	2 cut(s)	150, 1129
AflIII	ACRYGT	2 cut(s)	138, 876
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	44, 214, 1038, 1137, 1208
AhlI	ACTAGT	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	4 cut(s)	298, 787, 904, 1224
AluI	AGCT	4 cut(s)	298, 787, 904, 1224
Alw21I	GWGCWC	1 cut(s)	789
AlwI	GGATC	5 cut(s)	230, 848, 1007, 1094, 1107
AoxI	GGCC	3 cut(s)	118, 128, 218
ApeKI	GCWGC	2 cut(s)	355, 892
ApoI	RAATTY	6 cut(s)	110, 251, 349, 458, 731, 1164
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	118, 128, 219
AsuHPI	GGTGA	2 cut(s)	66, 515
BaeGI	GKGCMC	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	1099
BanII	GRGCYC	2 cut(s)	789, 924
BbsI	GAAGAC	2 cut(s)	206, 1013
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	342, 904
BccI	CCATC	4 cut(s)	628, 674, 1090, 1111
BceAI	ACGGC	2 cut(s)	143, 699
BcgI	CGANNNNNNTGC	2 cut(s)	757, 791
BciT130I	CCWGG	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	358
BclI	TGATCA	1 cut(s)	304
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	426, 1086
BfmI	CTRYAG	2 cut(s)	696, 1107
BfuAI	ACCTGC	1 cut(s)	935
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	356, 893
BlsI	GCNGC	2 cut(s)	357, 894
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	118, 128, 219
BmiI	GGNNCC	1 cut(s)	1101
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	3 cut(s)	213, 216, 1161
BmsI	GCATC	2 cut(s)	496, 568
BmuI	ACTGGG	3 cut(s)	213, 216, 1161
BpiI	GAAGAC	2 cut(s)	206, 1013
BpmI	CTGGAG	1 cut(s)	1045
BpuEI	CTTGAG	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	715
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 1129
Bse118I	RCCGGY	3 cut(s)	130, 190, 216
Bse1I	ACTGG	5 cut(s)	208, 222, 896, 1062, 1156
Bse3DI	GCAATG	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	5 cut(s)	318, 478, 583, 685, 1234
BseLI	CCNNNNNNNGG	2 cut(s)	150, 1129
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	3 cut(s)	396, 774, 984
BseNI	ACTGG	5 cut(s)	208, 222, 896, 1062, 1156
BseRI	GAGGAG	1 cut(s)	813
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	342, 904
Bsh1236I	CGCG	1 cut(s)	878
BshFI	GGCC	3 cut(s)	120, 130, 220
BshTI	ACCGGT	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	3 cut(s)	131, 191, 217
BsiWI	CGTACG	1 cut(s)	568
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	150, 1129
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	120, 130, 220
Bsp1286I	GDGCHC	3 cut(s)	641, 789, 924
Bsp143I	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
BspANI	GGCC	3 cut(s)	120, 130, 220
BspCNI	CTCAG	3 cut(s)	397, 775, 985
BspFNI	CGCG	1 cut(s)	878
BspLI	GGNNCC	1 cut(s)	1101
BspMAI	CTGCAG	1 cut(s)	1111
BspMI	ACCTGC	1 cut(s)	935
BspPI	GGATC	5 cut(s)	230, 848, 1007, 1094, 1107
BsrDI	GCAATG	1 cut(s)	946
BsrFI	RCCGGY	3 cut(s)	130, 190, 216
BsrI	ACTGG	5 cut(s)	208, 222, 896, 1062, 1156
BssAI	RCCGGY	3 cut(s)	130, 190, 216
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	4 cut(s)	391, 568, 697, 830
Bst6I	CTCTTC	3 cut(s)	45, 434, 1067
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	91, 534, 880, 884
BstDEI	CTNAG	3 cut(s)	405, 783, 993
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	5 cut(s)	318, 478, 583, 685, 1234
BstFNI	CGCG	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	7 cut(s)	28, 238, 307, 856, 1015, 1059, 1102
BstMBI	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	570, 784, 892, 901
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	2 cut(s)	142, 1025
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	696, 1107
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	2 cut(s)	342, 904
BstV2I	GAAGAC	2 cut(s)	206, 1013
BstX2I	RGATCY	2 cut(s)	1012, 1099
BstYI	RGATCY	2 cut(s)	1012, 1099
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	120, 130, 220
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	5 cut(s)	318, 478, 583, 685, 1234
BtsIMutI	CAGTG	4 cut(s)	229, 231, 903, 918
BveI	ACCTGC	1 cut(s)	935
Cac8I	GCNNGC	4 cut(s)	91, 534, 880, 884
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	3 cut(s)	130, 190, 216
Cfr13I	GGNCC	3 cut(s)	118, 128, 219
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	569, 693
CspAI	ACCGGT	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	4 cut(s)	139, 1022, 1096, 1192
CviQI	GTAC	2 cut(s)	569, 693
DdeI	CTNAG	3 cut(s)	405, 783, 993
DpnI	GATC	7 cut(s)	27, 237, 306, 855, 1014, 1058, 1101
DpnII	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
Eam1104I	CTCTTC	3 cut(s)	45, 434, 1067
EarI	CTCTTC	3 cut(s)	45, 434, 1067
Ecl136II	GAGCTC	1 cut(s)	787
Eco24I	GRGCYC	2 cut(s)	789, 924
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	2 cut(s)	627, 650
EcoICRI	GAGCTC	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	2 cut(s)	789, 924
FaeI	CATG	4 cut(s)	142, 1025, 1099, 1195
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	138, 1021, 1095, 1191
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	356, 893
FokI	GGATG	4 cut(s)	305, 485, 590, 692
FriOI	GRGCYC	2 cut(s)	789, 924
Fsp4HI	GCNGC	2 cut(s)	356, 893
FspBI	CTAG	2 cut(s)	426, 1086
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	2 cut(s)	356, 893
GsuI	CTGGAG	1 cut(s)	1045
HaeIII	GGCC	3 cut(s)	120, 130, 220
HapII	CCGG	3 cut(s)	131, 191, 217
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	142, 1025, 1099, 1195
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	6 cut(s)	267, 415, 749, 820, 1133, 1236
HpaII	CCGG	3 cut(s)	131, 191, 217
HphI	GGTGA	2 cut(s)	66, 515
Hpy166II	GTNNAC	2 cut(s)	74, 136
Hpy188I	TCNGA	8 cut(s)	103, 198, 316, 819, 865, 1017, 1228, 1241
Hpy188III	TCNNGA	4 cut(s)	44, 239, 271, 925
Hpy8I	GTNNAC	2 cut(s)	74, 136
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	8 cut(s)	41, 87, 403, 830, 911, 922, 1150, 1226
HpyCH4III	ACNGT	4 cut(s)	391, 568, 697, 830
HpyCH4V	TGCA	7 cut(s)	525, 564, 663, 882, 944, 1045, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	570, 784, 892, 901
HpyF3I	CTNAG	3 cut(s)	405, 783, 993
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	142, 1025, 1099, 1195
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
Lsp1109I	GCAGC	2 cut(s)	342, 904
LweI	GCATC	2 cut(s)	496, 568
MaeI	CTAG	2 cut(s)	426, 1086
MaeIII	GTNAC	1 cut(s)	952
MalI	GATC	7 cut(s)	27, 237, 306, 855, 1014, 1058, 1101
MboI	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
MboII	GAAGA	7 cut(s)	32, 211, 451, 488, 643, 1018, 1084
MflI	RGATCY	2 cut(s)	1012, 1099
MhlI	GDGCHC	3 cut(s)	641, 789, 924
MluCI	AATT	9 cut(s)	110, 209, 251, 349, 458, 559, 731, 1164, 1208
MluI	ACGCGT	1 cut(s)	876
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	9 cut(s)	75, 119, 157, 238, 788, 834, 867, 1068, 1180
MseI	TTAA	4 cut(s)	300, 558, 935, 1029
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	3 cut(s)	131, 191, 217
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	4 cut(s)	570, 784, 892, 901
NdeII	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
NlaIII	CATG	4 cut(s)	142, 1025, 1099, 1195
NlaIV	GGNNCC	1 cut(s)	1101
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	2 cut(s)	142, 1025
PciI	ACATGT	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	267, 415, 749, 1133, 1236
Pfl23II	CGTACG	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	1129
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	357, 894
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PscI	ACATGT	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspLI	CGTACG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	1101
PspPI	GGNCC	3 cut(s)	118, 128, 219
PstI	CTGCAG	1 cut(s)	1111
PsuI	RGATCY	2 cut(s)	1012, 1099
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	570, 694
RsaNI	GTAC	2 cut(s)	569, 693
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	4 cut(s)	300, 558, 935, 1029
SatI	GCNGC	2 cut(s)	356, 893
Sau3AI	GATC	7 cut(s)	25, 235, 304, 853, 1012, 1056, 1099
Sau96I	GGNCC	3 cut(s)	118, 128, 219
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	3 cut(s)	641, 789, 924
SetI	ASST	8 cut(s)	24, 79, 300, 789, 906, 949, 986, 1226
SfaNI	GCATC	2 cut(s)	496, 568
SfcI	CTRYAG	2 cut(s)	696, 1107
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	9 cut(s)	110, 209, 251, 349, 458, 559, 731, 1164, 1208
SspI	AATATT	1 cut(s)	761
SspMI	CTAG	2 cut(s)	426, 1086
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	4 cut(s)	391, 568, 697, 830
TaqI	TCGA	2 cut(s)	162, 743
TasI	AATT	9 cut(s)	110, 209, 251, 349, 458, 559, 731, 1164, 1208
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	5 cut(s)	267, 415, 749, 1133, 1236
Tru1I	TTAA	4 cut(s)	300, 558, 935, 1029
Tru9I	TTAA	4 cut(s)	300, 558, 935, 1029
TscAI	CASTG	4 cut(s)	229, 238, 903, 918
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	2 cut(s)	355, 892
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	5 cut(s)	123, 489, 533, 725, 1160
TspGWI	ACGGA	2 cut(s)	133, 311
TspRI	CASTG	4 cut(s)	229, 238, 903, 918
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	1129
XapI	RAATTY	6 cut(s)	110, 251, 349, 458, 731, 1164
XceI	RCATGY	2 cut(s)	142, 1025
XspI	CTAG	2 cut(s)	426, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.