Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000303.1

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

70150 .. 71299

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000303.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcgaactgagctcaagggagggaatttgagaacaggatttcggaacccataccagccagaaggagtttttatggtcgatcctctagctgacagaacaaactcgaacaagcgtaagcagccggtgaagctattgtctgtggaagggcttaagaaggcattaagtaaagcagataaagtgactacaaatacacattcacaaggaataaggtttttggccaaggtcacagggacgacagatccaaatgatgtgattaaagagacaacaatgcaaaagaaacaaatatccagcttagagaagaggaaatcgtctaccacaagcatgggttcatctgcattcatcaaaaaccagcaagtagatgcaaaaagaatgaaaactggaaaggacaatagtctggcagacaaatcaaagcagggcactggaaagatgattgaattagattgctatattagctcggatgaagagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

9.81

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	311
AclWI	GGATC	2 cut(s)	74, 233
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	25
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	434
AluBI	AGCT	5 cut(s)	13, 89, 130, 291, 453
AluI	AGCT	5 cut(s)	13, 89, 130, 291, 453
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	74, 233
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	382, 424
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	382, 424
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	15, 419
Bsp143I	GATC	2 cut(s)	79, 238
BspANI	GGCC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	74, 233
BspTI	CTTAAG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	382, 424
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	79, 238
BssT1I	CCWWGG	1 cut(s)	219
Bst6I	CTCTTC	2 cut(s)	293, 456
BstAFI	CTTAAG	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	9, 292
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	82, 241
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	79, 238
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 118, 127, 450
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	121
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	9 cut(s)	13, 58, 89, 121, 130, 148, 218, 291, 453
CviKI_1	RGCY	9 cut(s)	13, 58, 89, 121, 130, 148, 218, 291, 453
DdeI	CTNAG	2 cut(s)	9, 292
DpnI	GATC	2 cut(s)	81, 240
DpnII	GATC	2 cut(s)	79, 238
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	293, 456
EarI	CTCTTC	2 cut(s)	293, 456
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	325
FaiI	YATR	4 cut(s)	52, 74, 323, 447
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	1 cut(s)	325
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	45, 457
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	3 cut(s)	56, 137, 148
HpyCH4V	TGCA	3 cut(s)	271, 335, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 118, 127, 450
HpyF3I	CTNAG	2 cut(s)	9, 292
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	79, 238
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	178, 223
MalI	GATC	2 cut(s)	81, 240
MboI	GATC	2 cut(s)	79, 238
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	15, 419
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	2 cut(s)	25, 434
MluNI	TGGCCA	1 cut(s)	218
MnlI	CCTC	3 cut(s)	14, 93, 294
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	3 cut(s)	150, 161, 255
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	10, 118, 127, 450
NdeII	GATC	2 cut(s)	79, 238
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	178, 223
PctI	GAATGC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	150, 161, 255
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	79, 238
SduI	GDGCHC	2 cut(s)	15, 419
SetI	ASST	7 cut(s)	15, 91, 132, 212, 225, 293, 455
SfaNI	GCATC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	14, 149
SmoI	CTYRAG	2 cut(s)	14, 149
Sse9I	AATT	2 cut(s)	25, 434
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	78, 104
TasI	AATT	2 cut(s)	25, 434
Tru1I	TTAA	3 cut(s)	150, 161, 255
Tru9I	TTAA	3 cut(s)	150, 161, 255
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	178, 223
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	178, 223
TspDTI	ATGAA	3 cut(s)	318, 328, 386
TspRI	CASTG	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.