MD10G1095100.v1.1

Protein MCM10 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
14884027 .. 14887697
3671 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1095100.v1.1.491

Sequence Viewer

Length: 1236 bp
ATGTCAAAACGTCAGGATGACCTCGATCTCCTTCTATCTCTTCAAGACAGGGTTTTGGAAACCCCTCCTGGTTCACCTTCCCATTCGCCAGGGTACCTATCGAACGATGAGTTGCGGAGCCAAAGAGGGCCGGCGGACATGTCCGTGTTCAGGGAGGCTGTTGAGGACTGCCTTGATTACCAACCCAAACCGGTTCAGAAGACTGGCAAGTTGAACCGGCCCAATGCCTCAACTGATCCAGAAGTGGAGAAGTTTTCGGGCTTGCGTATCAGGAAGCAGTTGGTAACTCCCTTAGAGCTTAGTGATCACTTTTCAGACATTCGTTTTGTTCGGTTGTCTGCCATAAAGAATTCGTTGCGTGGGGATACACTTACAGGATGTTGGGCAACTGCGGGAGTGTTGACCGAGAAGGGGATTCCAAGAACTAGTTCAAACGGGAAGAGTTATTGTATTTGGAAACTCGGGTGTCTGGATGAAGATACCATTTCTGTCTTCTTATTTGGTGATGCTTATGAGACTTACTTCAAAGAGCAGGCTGGAGTAGTTTTCGCTCTGTTTAATTGCGCCGTACGCAAGGATGCGCTGGGTGGTGGTTTTTCTTTGAGCGTGTATTCAGCCAATCAAATGCTGAAGATGGGTACTTCAGTTGATTATGGAGTTTGCAAAGGGAAAAGGAAGGATGGAATGGCTTGTACTGTAGTCTTAAACAAACGTCGTGGGATATATTGTAAATTTCATAAATCAAAAGAATCACAGAAATATTCTTCAATGCGAACTGAGCTCAATGGGGGGAACTTGAGAACAGCATTTCGGAGTCCCTCTAACTCAGAAGGAATTTATTTGGTTGATCCTCTATCTAACAAAACAAACTCAGGCAAAACTAAGCAGCCACTGAAGCTATTATCCGTGGAGGGGCTAAAGAAGGCACTAAGCAATGGAAGTAAAGTGACTACAAATACACACTCCCAAGGATTAAGGTTCCTGGCGGCGGTCACAGGGAAGACAGATCCGAAAGACGTCCTCAAAGAGTCAAAATTGCAAAGCAAACAAACCTCCAGCGTAGAGAAGAGGAAACCATCTTCTACAAGCACGGATCCATCCGCAGTCATCAGAAACCAGCAACTGGATGCGAAAAGAATGAAAACTGAAAAGGAGAATAGTTTGACAGGCAAAACAAAGCCGGCCACAGTAAAGATGATGGAGTTACATTACATAAGCTCGGACGAAGGATTCTGA

Protein Analysis

412

Amino Acids

45.36

Weight (kDa)

9.47

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_MCM10 PF22379 84 - 210 2.6e-54 MCM10 OB-fold
zf-primase PF09329 213 - 258 5e-14 Primase zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1020
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 1123
AciI CCGC 6 cut(s) 115, 134, 392, 986, 989, 1101
AclWI GGATC 5 cut(s) 230, 842, 1001, 1088, 1101
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 3 cut(s) 349, 731, 834
AcuI CTGAAG 3 cut(s) 627, 650, 914
AcyI GRCGYC 1 cut(s) 1017
AfaI GTAC 4 cut(s) 95, 570, 640, 694
AfiI CCNNNNNNNGG 5 cut(s) 150, 411, 912, 988, 1123
AflIII ACRYGT 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 5 cut(s) 44, 214, 432, 526, 768
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 3 cut(s) 67, 88, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 4 cut(s) 298, 781, 898, 1218
AluI AGCT 4 cut(s) 298, 781, 898, 1218
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 5 cut(s) 230, 842, 1001, 1088, 1101
AlwNI CAGNNNCTG 2 cut(s) 892, 1123
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 3 cut(s) 128, 218, 1182
ApeKI GCWGC 1 cut(s) 886
ApoI RAATTY 3 cut(s) 349, 731, 834
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsiGI ACCGGT 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 427
Asp718I GGTACC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 566, 583
AspS9I GGNCC 2 cut(s) 128, 219
AsuHPI GGTGA 2 cut(s) 66, 515
AvaI CYCGRG 1 cut(s) 461
BaeI ACNNNNGTAYC 2 cut(s) 630, 663
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 783
BbsI GAAGAC 3 cut(s) 206, 484, 1007
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 898
BccI CCATC 5 cut(s) 628, 674, 1084, 1105, 1192
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 3 cut(s) 69, 90, 983
BciVI GTATCC 1 cut(s) 358
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 509
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 696
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 2 cut(s) 887, 987
BlsI GCNGC 2 cut(s) 888, 988
Bme1390I CCNGG 3 cut(s) 69, 90, 983
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 128, 219
BmiI GGNNCC 4 cut(s) 95, 119, 980, 1095
BmrFI CCNGG 3 cut(s) 69, 90, 983
BmsI GCATC 3 cut(s) 496, 568, 1117
BpiI GAAGAC 3 cut(s) 206, 484, 1007
BpmI CTGGAG 2 cut(s) 558, 1039
BpuEI CTTGAG 1 cut(s) 817
BsaHI GRCGYC 1 cut(s) 1017
BsaJI CCNNGG 3 cut(s) 89, 906, 967
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 411, 912, 988, 1123
Bse118I RCCGGY 4 cut(s) 130, 190, 216, 1180
Bse1I ACTGG 2 cut(s) 208, 1128
Bse3DI GCAATG 1 cut(s) 940
BseBI CCWGG 3 cut(s) 69, 90, 983
BseDI CCNNGG 3 cut(s) 89, 906, 967
BseGI GGATG 7 cut(s) 22, 383, 478, 583, 685, 1097, 1132
BseLI CCNNNNNNNGG 5 cut(s) 150, 411, 912, 988, 1123
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 3 cut(s) 768, 840, 885
BseNI ACTGG 2 cut(s) 208, 1128
BseXI GCAGC 1 cut(s) 898
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 3 cut(s) 130, 220, 1184
BshNI GGYRCC 1 cut(s) 93
BshTI ACCGGT 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 4 cut(s) 131, 191, 217, 1181
BsiWI CGTACG 1 cut(s) 568
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 5 cut(s) 150, 411, 912, 988, 1123
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 801
BsnI GGCC 3 cut(s) 130, 220, 1184
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
BspACI CCGC 6 cut(s) 115, 134, 392, 986, 989, 1101
BspANI GGCC 3 cut(s) 130, 220, 1184
BspCNI CTCAG 3 cut(s) 769, 839, 884
BspLI GGNNCC 4 cut(s) 95, 119, 980, 1095
BspPI GGATC 5 cut(s) 230, 842, 1001, 1088, 1101
BspT107I GGYRCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 940
BsrFI RCCGGY 4 cut(s) 130, 190, 216, 1180
BsrI ACTGG 2 cut(s) 208, 1128
BssAI RCCGGY 4 cut(s) 130, 190, 216, 1180
BssECI CCNNGG 3 cut(s) 89, 906, 967
BssMI GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
BssNI GRCGYC 1 cut(s) 1017
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 3 cut(s) 69, 90, 983
Bst4CI ACNGT 2 cut(s) 697, 1189
Bst6I CTCTTC 3 cut(s) 45, 434, 1061
BstACI GRCGYC 1 cut(s) 1017
BstC8I GCNNGC 4 cut(s) 132, 263, 534, 1182
BstDEI CTNAG 7 cut(s) 292, 299, 777, 826, 871, 882, 929
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 7 cut(s) 22, 383, 478, 583, 685, 1097, 1132
BstHHI GCGC 2 cut(s) 566, 583
BstKTI GATC 6 cut(s) 28, 238, 307, 850, 1009, 1096
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 570, 778, 895
BstNI CCWGG 3 cut(s) 69, 90, 983
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 3 cut(s) 67, 88, 981
BstSFI CTRYAG 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 898
BstV2I GAAGAC 3 cut(s) 206, 484, 1007
BstX2I RGATCY 2 cut(s) 1006, 1093
BstYI RGATCY 2 cut(s) 1006, 1093
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 3 cut(s) 130, 220, 1184
BtgI CCRYGG 1 cut(s) 906
BtsCI GGATG 7 cut(s) 22, 383, 478, 583, 685, 1097, 1132
BtsIMutI CAGTG 1 cut(s) 890
Cac8I GCNNGC 4 cut(s) 132, 263, 534, 1182
CaiI CAGNNNCTG 2 cut(s) 892, 1123
CfoI GCGC 2 cut(s) 566, 583
Cfr10I RCCGGY 4 cut(s) 130, 190, 216, 1180
Cfr13I GGNCC 2 cut(s) 128, 219
Csp6I GTAC 4 cut(s) 94, 569, 639, 693
CspAI ACCGGT 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviAII CATG 1 cut(s) 139
CviQI GTAC 4 cut(s) 94, 569, 639, 693
DdeI CTNAG 7 cut(s) 292, 299, 777, 826, 871, 882, 929
DpnI GATC 6 cut(s) 27, 237, 306, 849, 1008, 1095
DpnII GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 3 cut(s) 45, 434, 1061
EarI CTCTTC 3 cut(s) 45, 434, 1061
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 783
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 3 cut(s) 627, 650, 914
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 781
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 67, 88, 981
EcoT14I CCWWGG 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 1 cut(s) 142
FaiI YATR 7 cut(s) 140, 344, 513, 654, 724, 738, 1214
FaqI GGGAC 1 cut(s) 801
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 385
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 887, 987
FokI GGATG 7 cut(s) 29, 390, 485, 590, 692, 1084, 1139
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 2 cut(s) 887, 987
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 565, 582
GluI GCNGC 2 cut(s) 887, 987
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 2 cut(s) 558, 1039
HaeIII GGCC 3 cut(s) 130, 220, 1184
HapII CCGG 4 cut(s) 131, 191, 217, 1181
HhaI GCGC 2 cut(s) 566, 583
Hin1I GRCGYC 1 cut(s) 1017
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 2 cut(s) 564, 581
HinP1I GCGC 2 cut(s) 564, 581
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 5 cut(s) 415, 749, 814, 1028, 1230
HpaII CCGG 4 cut(s) 131, 191, 217, 1181
HphI GGTGA 2 cut(s) 66, 515
Hpy166II GTNNAC 2 cut(s) 74, 402
Hpy188I TCNGA 8 cut(s) 198, 316, 813, 829, 1011, 1112, 1222, 1235
Hpy188III TCNNGA 5 cut(s) 14, 44, 239, 271, 470
Hpy8I GTNNAC 2 cut(s) 74, 402
Hpy99I CGWCG 1 cut(s) 717
HpyAV CCTTC 7 cut(s) 41, 87, 403, 670, 824, 916, 1220
HpyCH4III ACNGT 2 cut(s) 697, 1189
HpyCH4IV ACGT 3 cut(s) 10, 712, 1017
HpyCH4V TGCA 2 cut(s) 663, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 570, 778, 895
HpyF3I CTNAG 7 cut(s) 292, 299, 777, 826, 871, 882, 929
HpySE526I ACGT 3 cut(s) 10, 712, 1017
Hsp92I GRCGYC 1 cut(s) 1017
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 2 cut(s) 564, 581
KpnI GGTACC 1 cut(s) 97
KroI GCCGGC 2 cut(s) 130, 1180
KroNI GCCGGC 2 cut(s) 132, 1182
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 898
LweI GCATC 3 cut(s) 496, 568, 1117
MaeI CTAG 1 cut(s) 426
MaeII ACGT 3 cut(s) 10, 712, 1017
MaeIII GTNAC 4 cut(s) 283, 946, 991, 1203
MalI GATC 6 cut(s) 27, 237, 306, 849, 1008, 1095
MboI GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
MflI RGATCY 2 cut(s) 1006, 1093
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 5 cut(s) 349, 559, 731, 834, 1034
MlyI GAGTC 2 cut(s) 823, 1037
MroNI GCCGGC 2 cut(s) 130, 1180
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 3 cut(s) 558, 704, 974
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 4 cut(s) 131, 191, 217, 1181
MspR9I CCNGG 3 cut(s) 69, 90, 983
MvaI CCWGG 3 cut(s) 69, 90, 983
MwoI GCNNNNNNNGC 3 cut(s) 570, 778, 895
NaeI GCCGGC 2 cut(s) 132, 1182
NdeII GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
NgoMIV GCCGGC 2 cut(s) 130, 1180
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 4 cut(s) 95, 119, 980, 1095
NmuCI GTSAC 2 cut(s) 946, 991
NspI RCATGY 1 cut(s) 142
PciI ACATGT 1 cut(s) 138
PdiI GCCGGC 2 cut(s) 132, 1182
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 3 cut(s) 415, 749, 1230
Pfl23II CGTACG 1 cut(s) 568
PflMI CCANNNNNTGG 1 cut(s) 1123
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 2 cut(s) 888, 988
PleI GAGTC 2 cut(s) 822, 1036
PpsI GAGTC 2 cut(s) 822, 1036
PscI ACATGT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 783
Psp6I CCWGG 3 cut(s) 67, 88, 981
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 3 cut(s) 67, 88, 981
PspLI CGTACG 1 cut(s) 568
PspN4I GGNNCC 4 cut(s) 95, 119, 980, 1095
PspPI GGNCC 2 cut(s) 128, 219
PstNI CAGNNNCTG 2 cut(s) 892, 1123
PsuI RGATCY 2 cut(s) 1006, 1093
RsaI GTAC 4 cut(s) 95, 570, 640, 694
RsaNI GTAC 4 cut(s) 94, 569, 639, 693
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 783
SaqAI TTAA 3 cut(s) 558, 704, 974
SatI GCNGC 2 cut(s) 887, 987
Sau3AI GATC 6 cut(s) 25, 235, 304, 847, 1006, 1093
Sau96I GGNCC 2 cut(s) 128, 219
SchI GAGTC 2 cut(s) 823, 1037
ScrFI CCNGG 3 cut(s) 69, 90, 983
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 3 cut(s) 496, 568, 1117
SfcI CTRYAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 5 cut(s) 349, 559, 731, 834, 1034
SsiI CCGC 6 cut(s) 115, 134, 392, 986, 989, 1101
SspI AATATT 1 cut(s) 761
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 67, 88, 981
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 2 cut(s) 697, 1189
TaiI ACGT 3 cut(s) 13, 715, 1020
TaqI TCGA 2 cut(s) 24, 101
TaqII GACCGA 1 cut(s) 419
TasI AATT 5 cut(s) 349, 559, 731, 834, 1034
TatI WGTACW 1 cut(s) 692
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 3 cut(s) 415, 749, 1230
Tru1I TTAA 3 cut(s) 558, 704, 974
Tru9I TTAA 3 cut(s) 558, 704, 974
TscAI CASTG 1 cut(s) 897
TseFI GTSAC 2 cut(s) 946, 991
TseI GCWGC 1 cut(s) 886
Tsp45I GTSAC 2 cut(s) 946, 991
TspDTI ATGAA 3 cut(s) 489, 725, 1154
TspGWI ACGGA 3 cut(s) 133, 895, 1106
TspRI CASTG 1 cut(s) 897
Van91I CCANNNNNTGG 1 cut(s) 1123
XapI RAATTY 3 cut(s) 349, 731, 834
XceI RCATGY 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 1 cut(s) 426
ZraI GACGTC 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.