Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

27528793 .. 27530833

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTTGATCTTGCCCAGATTGCCCGATTGGAACTATTTGCTGGAATGGTGTTTGCGCTGTTTAATTGTAGCATACGCAAGGATGCTAAGGCTGCTGGTTTTTCTTTGAGTGTGTTTTCAGCCAATCATATTGTGAAGATTGGAACTTCTGTTGATTATGGAGTTTGCAGAGGGAAAAGGAAGGATGGAAAGGCTTGCGCCATGGAATATATTAAAGAATCACAGAAATATTCCACTATGCGAACCGAGCTCAAGGGAGGGAATTTGAGAACAGGATTTCGAAACCCATACCAGCTAGAAGGAGTTTTTATGGTCGATCCTCTAGCTGACAGAACAAACTTGAACAAGCGTAAGCAGCCGGTGAAGCTATTGTCTGTGGAAGGGCTTAAAAAGGCACTAAGGATGCAGTGGCTGGAGTTCAAGAATGGTGAAGCTACAAGAAAGTTGAATTCAGGATGCAGTTGCAACAGTTCTGGAATGGTGAAGCTACAAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

9.76

Isoelectric Point (pI)

23.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	262, 448
AgsI	TTSAA	3 cut(s)	343, 421, 448
AluBI	AGCT	6 cut(s)	250, 295, 326, 367, 434, 487
AluI	AGCT	6 cut(s)	250, 295, 326, 367, 434, 487
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	92, 355
ApoI	RAATTY	2 cut(s)	262, 448
AspLEI	GCGC	2 cut(s)	58, 200
AsuHPI	GGTGA	3 cut(s)	373, 440, 493
AsuII	TTCGAA	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	79, 367
BccI	CCATC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	296, 323
BisI	GCNGC	2 cut(s)	93, 356
BlsI	GCNGC	2 cut(s)	94, 357
BmsI	GCATC	3 cut(s)	73, 393, 446
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	4 cut(s)	88, 190, 408, 461
BseXI	GCAGC	2 cut(s)	79, 367
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	7, 316
Bsp19I	CCATGG	1 cut(s)	201
BspPI	GGATC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	7, 316
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	87, 398
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	88, 190, 408, 461
BstHHI	GCGC	2 cut(s)	58, 200
BstKTI	GATC	2 cut(s)	10, 319
BstMBI	GATC	2 cut(s)	7, 316
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 92, 247, 355, 364
BstV1I	GCAGC	2 cut(s)	79, 367
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	88, 190, 408, 461
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	2 cut(s)	58, 200
Cfr10I	RCCGGY	1 cut(s)	358
CviAII	CATG	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	87, 398
DpnI	GATC	2 cut(s)	9, 318
DpnII	GATC	2 cut(s)	7, 316
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	205
FaiI	YATR	8 cut(s)	74, 129, 159, 203, 210, 239, 289, 311
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	93, 356
FokI	GGATG	4 cut(s)	95, 197, 415, 468
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	93, 356
FspBI	CTAG	2 cut(s)	296, 323
GlaI	GCGC	2 cut(s)	57, 199
GluI	GCNGC	2 cut(s)	93, 356
GsuI	CTGGAG	1 cut(s)	434
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	2 cut(s)	58, 200
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	2 cut(s)	56, 198
HinP1I	GCGC	2 cut(s)	56, 198
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	373, 440, 493
Hpy188III	TCNNGA	3 cut(s)	421, 453, 474
HpyAV	CCTTC	3 cut(s)	175, 293, 374
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	168, 406, 459, 465
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 92, 247, 355, 364
HpyF3I	CTNAG	2 cut(s)	87, 398
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	2 cut(s)	56, 198
Kzo9I	GATC	2 cut(s)	7, 316
LpnPI	CCDG	9 cut(s)	27, 29, 81, 258, 305, 372, 398, 438, 459
Lsp1109I	GCAGC	2 cut(s)	79, 367
LweI	GCATC	3 cut(s)	73, 393, 446
MaeI	CTAG	2 cut(s)	296, 323
MalI	GATC	2 cut(s)	9, 318
MboI	GATC	2 cut(s)	7, 316
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	64, 262, 448
MnlI	CCTC	3 cut(s)	164, 251, 330
MseI	TTAA	3 cut(s)	63, 213, 387
MspI	CCGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	5 cut(s)	20, 92, 247, 355, 364
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	7, 316
NlaIII	CATG	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	94, 357
Psp124BI	GAGCTC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	63, 213, 387
SatI	GCNGC	2 cut(s)	93, 356
Sau3AI	GATC	2 cut(s)	7, 316
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	6 cut(s)	252, 297, 328, 369, 436, 489
SfaNI	GCATC	3 cut(s)	73, 393, 446
SfuI	TTCGAA	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	64, 262, 448
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	2 cut(s)	296, 323
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	280, 315
TasI	AATT	3 cut(s)	64, 262, 448
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	63, 213, 387
Tru9I	TTAA	3 cut(s)	63, 213, 387
TscAI	CASTG	1 cut(s)	413
TseI	GCWGC	2 cut(s)	92, 355
TspRI	CASTG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	262, 448
XspI	CTAG	2 cut(s)	296, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.