FvH4_2g01260

Protein MCM10 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1192685 .. 1196477
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01260.t3

Sequence Viewer

Length: 1359 bp
ATGTTCCCGCCAAACAAAATGAAAATTGCCTCGGACAGCCCTAATGGATCTGAAGCTCTATTTCTTCTATCCCAAAATACACAAAAAACCAGAGAGCCAAAGCCAACCATGTCAAACCGCGAAGACGACGACCTCGACCTCCTTCTCTCCCTGCAAGACAAGGTTTTGGAAACCCCACCTGCCTCTCCTTCACATTCCCCAGACACAAGGTATCTTTCCGACGAGGATGAGCTGTTCCGGCGAAGAAAACCGGCGGACATGTCCGTTTTCAGGGATGCTGTACAGGACTGCCTCGATTACGATCACCAATCAGCGCTGAAGACCGCTAAGTTGAAGCAGAACAGTTCCTCCAATGAATCTGAGGTTGAGAAGTATTCGGGTTTGCGAATAAGGAAGCAGTTGCTAACTCCTTCGGAGCTCAAGGATCGGTTTTCAGACATACGTTTTGTTCGGTTACCCAGCATAAAGAACTATCTGGTTGGGGAAACTCTTTCAGGATGTTGGGCAACTGTTGGAGTGTTGACTGAGAAGGGGACTAAAAGAACTAGTTCTACGGGGAAGAGCTATGCGATATACAAATTCGGGTGTTTGGATGAAGATACTGTTTCTGTTTTCTTGTTTGGTGATGCTTATGAGAGGAACTGCAATGAGCCAGCTGGAATGGTGTTTGCGCTGTTTAATTGTAGCGTACGCAAGGATGCTAAGGGTGCTGGTTTTTCTTTGAGTGTGTTTTCAGCCAATCATATTGTGAAGATAGGAACTTCTGTTGATTATGGAGTTTGCAGAGGGAAAAGGAAGGATGGAATGGCTTGTACTTTAGTCATAAATAAGCGCCATGGAATATATTGTAAATTTCATAGATCGAAAGAATCACAGAAATATTCCACTATGCGAACTGAGCTCAAGGGAGGGAATTTGAGAACAGGATTTCGGAACCCATACCAGCCAGAAGGAGTTTTTATGGTCGATCCTCTAGCTGACAGAACAAACTTGAACAAGCGAAAGCAGCCGGTGAAGCTATTGTCTGTGGAAGGGCTTAAAAAGGCACTAAGTAAAGCGGATAAAGTGACTACAAATACACATTCACAAGGAATAAGGTTTTTGGCCAAGGTCACAGGGACAACAGATCCAAACGATGTGATTAAACAGACAGCAATGCAAAAGAAACAAACTTCTATCTCAGAAAAGAGAAAATTGTCTACCACAAACATGGGTTCGTCTGCAGTCATCAAAAACCAGCAATTAGATGCAAAACGAACGAAAACTAGCGAGGAGAATAGTCTGGCAGACAAAGCAAAGCAGGGCACAGAAAAGATGATTGAATTAGATTACTATATCAGCTCGGATGAAGAGTTGTGA

Protein Analysis

453

Amino Acids

50.61

Weight (kDa)

9.29

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_MCM10 PF22379 124 - 250 4e-52 MCM10 OB-fold
zf-primase PF09329 253 - 298 2.9e-14 Primase zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 1199
AccII CGCG 1 cut(s) 120
AciI CCGC 5 cut(s) 8, 118, 254, 324, 1058
AclWI GGATC 4 cut(s) 55, 432, 962, 1121
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 3 cut(s) 578, 851, 913
AcuI CTGAAG 2 cut(s) 72, 338
AfaI GTAC 3 cut(s) 282, 690, 814
AfeI AGCGCT 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 334, 994, 1322
AhlI ACTAGT 1 cut(s) 545
AloI GAACNNNNNNTCC 4 cut(s) 218, 250, 332, 364
AluBI AGCT 9 cut(s) 56, 232, 418, 564, 656, 901, 977, 1018, 1341
AluI AGCT 9 cut(s) 56, 232, 418, 564, 656, 901, 977, 1018, 1341
Alw21I GWGCWC 2 cut(s) 420, 903
AlwI GGATC 4 cut(s) 55, 432, 962, 1121
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 1 cut(s) 1104
ApeKI GCWGC 1 cut(s) 1006
ApoI RAATTY 3 cut(s) 578, 851, 913
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 547
AspLEI GCGC 3 cut(s) 316, 673, 834
AsuHPI GGTGA 3 cut(s) 296, 635, 1024
BaeGI GKGCMC 1 cut(s) 1307
BalI TGGCCA 1 cut(s) 1106
BanII GRGCYC 2 cut(s) 420, 903
BbsI GAAGAC 2 cut(s) 129, 326
Bbv12I GWGCWC 2 cut(s) 420, 903
BbvI GCAGC 1 cut(s) 1018
BccI CCATC 1 cut(s) 794
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 3 cut(s) 546, 974, 1266
BfmI CTRYAG 1 cut(s) 1221
BfoI RGCGCY 2 cut(s) 317, 835
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 1007
BlsI GCNGC 1 cut(s) 1008
BmiI GGNNCC 1 cut(s) 935
BmsI GCATC 4 cut(s) 265, 616, 688, 1237
BpiI GAAGAC 2 cut(s) 129, 326
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 404, 887
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 30, 835, 1107
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 2 cut(s) 250, 1009
Bse3DI GCAATG 2 cut(s) 652, 1161
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 30, 835, 1107
BseGI GGATG 7 cut(s) 232, 280, 503, 598, 703, 805, 1351
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 2 cut(s) 652, 1161
BseMII CTCAG 4 cut(s) 351, 516, 888, 1194
BseRI GAGGAG 1 cut(s) 1286
BseSI GKGCMC 1 cut(s) 1307
BseXI GCAGC 1 cut(s) 1018
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 1106
BsiHKAI GWGCWC 2 cut(s) 420, 903
BsiSI CCGG 3 cut(s) 238, 251, 1010
BsiWI CGTACG 1 cut(s) 688
BslFI GGGAC 2 cut(s) 547, 1132
BslI CCNNNNNNNGG 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 547, 1132
BsnI GGCC 1 cut(s) 1106
Bsp1286I GDGCHC 3 cut(s) 420, 903, 1307
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 5 cut(s) 8, 118, 254, 324, 1058
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 4 cut(s) 352, 517, 889, 1193
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 935
BspMAI CTGCAG 1 cut(s) 1225
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 4 cut(s) 55, 432, 962, 1121
BspQI GCTCTTC 1 cut(s) 554
BsrDI GCAATG 2 cut(s) 652, 1161
BsrFI RCCGGY 2 cut(s) 250, 1009
BsrGI TGTACA 1 cut(s) 280
BssAI RCCGGY 2 cut(s) 250, 1009
BssECI CCNNGG 3 cut(s) 30, 835, 1107
BssMI GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
BssT1I CCWWGG 2 cut(s) 835, 1107
Bst4CI ACNGT 3 cut(s) 344, 511, 604
Bst6I CTCTTC 2 cut(s) 554, 1344
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 7 cut(s) 327, 360, 525, 702, 897, 1049, 1180
BstDSI CCRYGG 1 cut(s) 835
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 7 cut(s) 232, 280, 503, 598, 703, 805, 1351
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 2 cut(s) 317, 835
BstHHI GCGC 3 cut(s) 316, 673, 834
BstKTI GATC 6 cut(s) 50, 304, 427, 863, 970, 1129
BstMBI GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 238, 707, 898, 1006, 1015, 1292
BstNSI RCATGY 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 1221
BstSLI GKGCMC 1 cut(s) 1307
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 1018
BstV2I GAAGAC 2 cut(s) 129, 326
BstX2I RGATCY 2 cut(s) 47, 1126
BstXI CCANNNNNNTGG 1 cut(s) 1210
BstYI RGATCY 2 cut(s) 47, 1126
BsuRI GGCC 1 cut(s) 1106
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 7 cut(s) 232, 280, 503, 598, 703, 805, 1351
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 654
CfoI GCGC 3 cut(s) 316, 673, 834
Cfr10I RCCGGY 2 cut(s) 250, 1009
Csp6I GTAC 3 cut(s) 281, 689, 813
CviAII CATG 4 cut(s) 109, 259, 836, 1210
CviQI GTAC 3 cut(s) 281, 689, 813
DdeI CTNAG 7 cut(s) 327, 360, 525, 702, 897, 1049, 1180
DpnI GATC 6 cut(s) 49, 303, 426, 862, 969, 1128
DpnII GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
EaeI YGGCCR 1 cut(s) 1104
Eam1104I CTCTTC 2 cut(s) 554, 1344
EarI CTCTTC 2 cut(s) 554, 1344
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 418, 901
Eco130I CCWWGG 2 cut(s) 835, 1107
Eco24I GRGCYC 2 cut(s) 420, 903
Eco47III AGCGCT 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 418, 901
Eco57I CTGAAG 2 cut(s) 72, 338
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 2 cut(s) 418, 901
EcoO65I GGTNACC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 835, 1107
EcoT38I GRGCYC 2 cut(s) 420, 903
ErhI CCWWGG 2 cut(s) 835, 1107
FaeI CATG 4 cut(s) 112, 262, 839, 1213
FaqI GGGAC 2 cut(s) 547, 1132
FatI CATG 4 cut(s) 108, 258, 835, 1209
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 1 cut(s) 1199
Fnu4HI GCNGC 1 cut(s) 1007
FokI GGATG 6 cut(s) 239, 287, 510, 605, 710, 812
FriOI GRGCYC 2 cut(s) 420, 903
Fsp4HI GCNGC 1 cut(s) 1007
FspBI CTAG 3 cut(s) 546, 974, 1266
GlaI GCGC 3 cut(s) 315, 672, 833
GluI GCNGC 1 cut(s) 1007
GsaI CCCAGC 1 cut(s) 462
HaeII RGCGCY 2 cut(s) 317, 835
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 3 cut(s) 238, 251, 1010
HhaI GCGC 3 cut(s) 316, 673, 834
Hin1II CATG 4 cut(s) 112, 262, 839, 1213
Hin6I GCGC 3 cut(s) 314, 671, 832
HinP1I GCGC 3 cut(s) 314, 671, 832
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 2 cut(s) 356, 869
HpaII CCGG 3 cut(s) 238, 251, 1010
HphI GGTGA 3 cut(s) 296, 635, 1024
Hpy166II GTNNAC 2 cut(s) 522, 1200
Hpy188I TCNGA 9 cut(s) 34, 52, 220, 361, 415, 436, 933, 1183, 1345
Hpy188III TCNNGA 1 cut(s) 495
Hpy8I GTNNAC 2 cut(s) 522, 1200
Hpy99I CGWCG 2 cut(s) 131, 224
HpyAV CCTTC 7 cut(s) 152, 198, 420, 523, 790, 944, 1025
HpyCH4III ACNGT 3 cut(s) 344, 511, 604
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 6 cut(s) 154, 645, 783, 1159, 1223, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 707, 898, 1006, 1015, 1292
HpyF3I CTNAG 7 cut(s) 327, 360, 525, 702, 897, 1049, 1180
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 4 cut(s) 112, 262, 839, 1213
HspAI GCGC 3 cut(s) 314, 671, 832
Kzo9I GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 1018
LweI GCATC 4 cut(s) 265, 616, 688, 1237
MaeI CTAG 3 cut(s) 546, 974, 1266
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 3 cut(s) 453, 1066, 1111
MalI GATC 6 cut(s) 49, 303, 426, 862, 969, 1128
MboI GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
MboII GAAGA 7 cut(s) 56, 134, 255, 331, 571, 608, 763
MflI RGATCY 2 cut(s) 47, 1126
MhlI GDGCHC 3 cut(s) 420, 903, 1307
MlsI TGGCCA 1 cut(s) 1106
MluCI AATT 8 cut(s) 24, 578, 679, 851, 913, 1193, 1241, 1322
MluNI TGGCCA 1 cut(s) 1106
MmeI TCCRAC 2 cut(s) 243, 493
Mox20I TGGCCA 1 cut(s) 1106
MroXI GAANNNNTTC 1 cut(s) 547
MscI TGGCCA 1 cut(s) 1106
MseI TTAA 3 cut(s) 678, 1038, 1143
MslI CAYNNNNRTG 1 cut(s) 1208
Msp20I TGGCCA 1 cut(s) 1106
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 3 cut(s) 238, 251, 1010
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 6 cut(s) 238, 707, 898, 1006, 1015, 1292
NcoI CCATGG 1 cut(s) 835
NdeII GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
NlaIII CATG 4 cut(s) 112, 262, 839, 1213
NlaIV GGNNCC 1 cut(s) 935
NmuCI GTSAC 2 cut(s) 1066, 1111
NspI RCATGY 1 cut(s) 262
PaqCI CACCTGC 1 cut(s) 187
PciI ACATGT 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 554
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 356, 869
Pfl23II CGTACG 1 cut(s) 688
PkrI GCNGC 1 cut(s) 1008
PscI ACATGT 1 cut(s) 258
Psp124BI GAGCTC 2 cut(s) 420, 903
PspEI GGTNACC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 458
PspLI CGTACG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 935
PsrI GAACNNNNNNTAC 2 cut(s) 535, 567
PstI CTGCAG 1 cut(s) 1225
PsuI RGATCY 2 cut(s) 47, 1126
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 3 cut(s) 282, 690, 814
RsaNI GTAC 3 cut(s) 281, 689, 813
RseI CAYNNNNRTG 1 cut(s) 1208
SacI GAGCTC 2 cut(s) 420, 903
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 3 cut(s) 678, 1038, 1143
SatI GCNGC 1 cut(s) 1007
Sau3AI GATC 6 cut(s) 47, 301, 424, 860, 967, 1126
SduI GDGCHC 3 cut(s) 420, 903, 1307
SfaNI GCATC 4 cut(s) 265, 616, 688, 1237
SfcI CTRYAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 1 cut(s) 1208
SmlI CTYRAG 2 cut(s) 419, 902
SmoI CTYRAG 2 cut(s) 419, 902
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 8 cut(s) 24, 578, 679, 851, 913, 1193, 1241, 1322
SsiI CCGC 5 cut(s) 8, 118, 254, 324, 1058
SspI AATATT 1 cut(s) 881
SspMI CTAG 3 cut(s) 546, 974, 1266
SstI GAGCTC 2 cut(s) 420, 903
StyI CCWWGG 2 cut(s) 835, 1107
TaaI ACNGT 3 cut(s) 344, 511, 604
TaiI ACGT 1 cut(s) 445
TaqI TCGA 4 cut(s) 135, 294, 863, 966
TasI AATT 8 cut(s) 24, 578, 679, 851, 913, 1193, 1241, 1322
TatI WGTACW 2 cut(s) 280, 812
TfiI GAWTC 2 cut(s) 356, 869
Tru1I TTAA 3 cut(s) 678, 1038, 1143
Tru9I TTAA 3 cut(s) 678, 1038, 1143
TseFI GTSAC 2 cut(s) 1066, 1111
TseI GCWGC 1 cut(s) 1006
Tsp45I GTSAC 2 cut(s) 1066, 1111
TspDTI ATGAA 4 cut(s) 35, 369, 609, 845
TspGWI ACGGA 1 cut(s) 253
XapI RAATTY 3 cut(s) 578, 851, 913
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 1199
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 3 cut(s) 546, 974, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.