Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8059040.1

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8059040.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgggaaaccttggagttgggtttaattgttggtatctttttctgtattggtacaggaagcagttgttaactccttcagagcttaaggatcggttttcagacatccgttttgttcggttacccaatataaagaactatctggttggggaaactctttcaggatgttgggcaactgttggagtgttgactgagaaggggactaaaagaactagttctacggggaagagctattcgatatacaaattcgggtgtttggatgaagataccgtttctgttttcttgtttggtgatgcttatgagaggaactgcaatgagcaggctggaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

109

Amino Acids

12.48

Weight (kDa)

8.35

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	83
AhlI	ACTAGT	1 cut(s)	209
AluBI	AGCT	2 cut(s)	82, 228
AluI	AGCT	2 cut(s)	82, 228
AlwI	GGATC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	299
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	102, 167, 262
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	175, 268
Bst6I	CTCTTC	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	189
BstEII	GGTNACC	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	102, 167, 262
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	102, 167, 262
Cac8I	GCNNGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	3 cut(s)	82, 228, 320
CviKI_1	RGCY	3 cut(s)	82, 228, 320
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaiI	YATR	3 cut(s)	128, 238, 297
FaqI	GGGAC	1 cut(s)	211
FokI	GGATG	3 cut(s)	89, 174, 269
FspBI	CTAG	1 cut(s)	210
HincII	GTYRAC	2 cut(s)	69, 186
HindII	GTYRAC	2 cut(s)	69, 186
HpaI	GTTAAC	1 cut(s)	69
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	69, 186
Hpy188I	TCNGA	2 cut(s)	79, 100
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	2 cut(s)	69, 186
HpyAV	CCTTC	2 cut(s)	84, 187
HpyCH4III	ACNGT	2 cut(s)	175, 268
HpyCH4V	TGCA	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	88
LguI	GCTCTTC	1 cut(s)	218
LpnPI	CCDG	5 cut(s)	40, 125, 144, 302, 306
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	235, 272
MluCI	AATT	2 cut(s)	25, 242
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	24, 68, 84
MspCI	CTTAAG	1 cut(s)	83
NdeII	GATC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	117
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	24, 68, 84
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	3 cut(s)	12, 84, 230
SfaNI	GCATC	1 cut(s)	280
SgeI	CNNG	8 cut(s)	23, 67, 152, 171, 222, 231, 259, 292
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	2 cut(s)	25, 242
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	175, 268
TaqI	TCGA	1 cut(s)	233
TasI	AATT	2 cut(s)	25, 242
Tru1I	TTAA	3 cut(s)	24, 68, 84
Tru9I	TTAA	3 cut(s)	24, 68, 84
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.